genome.fa.s5.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  127  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39689415--39689461	24	2.0	24	95	0	85	23	17	17	42	1.88
39691376--39691423	25	2.0	25	87	4	71	31	0	27	41	1.56
39691873--39692380	126	4.0	126	90	0	775	33	17	21	27	1.96
39695865--39695907	18	2.4	18	92	0	68	41	9	27	20	1.83
39697699--39697730	15	2.1	15	94	0	55	71	0	0	28	0.86
39699367--39699453	18	4.8	18	85	0	120	29	24	13	32	1.94
39699366--39699453	36	2.4	36	90	0	140	29	23	13	32	1.93
39706270--39706307	19	2.0	20	85	15	53	55	5	5	34	1.45
39719088--39719142	21	2.6	21	77	13	58	32	5	0	61	1.19
39719121--39719201	27	3.1	26	73	18	71	35	3	2	58	1.29
39731210--39731794	44	13.3	44	87	2	762	31	14	27	27	1.95
39732929--39732973	20	2.2	20	92	0	72	11	20	60	8	1.57
39733458--39733516	28	2.1	28	84	12	77	37	1	3	57	1.25
39733536--39733699	13	11.5	15	67	24	63	33	3	2	60	1.25
39733661--39733705	20	2.2	20	84	7	56	33	4	2	60	1.29
39735311--39735353	13	3.3	12	81	15	50	74	2	0	23	0.93
39743939--39743974	18	2.0	18	100	0	72	38	11	0	50	1.38
39745830--39745896	18	3.7	18	81	0	80	32	17	14	34	1.91
39745830--39745900	36	1.9	37	88	2	108	30	16	15	36	1.90
39746019--39746065	6	7.8	6	85	0	67	46	12	19	21	1.82
39746423--39746448	3	8.7	3	100	0	52	65	0	0	34	0.93
39752863--39752912	20	2.5	20	100	0	100	38	26	14	22	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39762793--39762883	43	2.1	43	84	8	114	25	17	27	29	1.97
39763991--39764043	21	2.5	21	100	0	106	28	22	28	20	1.99
39764441--39764562	23	5.4	22	72	12	68	29	17	14	38	1.89
39764813--39764907	23	4.1	23	78	10	104	28	15	20	35	1.93
39768266--39768295	14	2.1	14	93	0	51	20	40	13	26	1.89
39768339--39768670	44	7.5	43	74	12	242	28	21	19	30	1.98
39768321--39768686	135	2.7	133	83	3	484	27	21	18	32	1.97
39779252--39779553	127	2.4	127	89	1	444	39	20	14	26	1.91
39781815--39781860	24	1.9	24	82	8	58	13	10	30	45	1.77
39785097--39785172	35	2.2	35	100	0	152	38	22	19	19	1.94
39791141--39791177	18	2.1	18	90	10	58	24	13	16	45	1.83
39794282--39794313	15	2.2	14	94	5	55	31	31	0	37	1.58
39811721--39811765	20	2.2	20	96	0	81	60	4	22	13	1.51
39813304--39813329	7	3.7	7	100	0	52	46	11	0	42	1.40
39814250--39814333	42	2.0	42	100	0	168	33	7	21	38	1.81
39815603--39815632	13	2.3	13	100	0	60	20	40	0	40	1.52
39815943--39815986	11	4.1	11	76	5	54	34	2	0	63	1.07
39832212--39832375	43	3.8	43	82	2	188	32	23	15	28	1.96
39832806--39832845	16	2.4	16	88	12	55	47	20	0	32	1.50
39838494--39838718	49	4.5	49	76	5	236	30	25	18	26	1.98
39841096--39841133	19	2.0	19	85	10	51	18	10	0	71	1.14
39849723--39850147	48	8.9	48	78	6	423	25	29	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39849723--39850148	144	3.0	144	85	4	533	25	29	18	26	1.98
39855650--39855692	22	2.0	21	82	13	52	0	27	0	72	0.85
39855652--39855693	20	2.1	20	86	8	59	0	26	0	73	0.83
39855773--39855806	5	6.6	5	89	3	50	55	0	2	41	1.15
39855760--39855804	15	3.3	14	82	14	58	53	0	2	44	1.13
39855827--39855874	19	2.5	19	86	6	62	35	6	4	54	1.45
39855827--39855878	18	2.7	19	88	5	70	34	7	3	53	1.48
39856271--39856333	30	2.1	30	87	0	90	26	1	11	60	1.40
39856412--39856451	18	2.2	18	86	8	55	17	0	15	67	1.23
39857017--39857059	21	2.0	22	86	9	61	51	32	9	6	1.61
39859985--39860028	21	2.0	23	86	8	65	29	0	9	61	1.27
39861591--39861632	13	3.4	13	83	9	52	35	0	14	50	1.43
39874131--39874260	45	2.8	45	78	8	136	32	16	20	30	1.95
39874160--39874233	22	3.3	22	72	10	69	32	14	21	31	1.94
39874172--39874235	22	2.9	22	80	15	78	34	17	21	26	1.95
39880208--39880277	36	1.9	36	97	0	131	28	37	5	28	1.80
39881827--39881871	22	2.0	22	86	0	63	26	15	20	37	1.92
39886799--39886883	41	2.1	41	100	0	170	50	9	21	18	1.75
39891649--39891718	35	2.0	35	94	0	122	34	14	17	34	1.90
39895984--39896051	6	11.3	6	100	0	136	32	0	33	33	1.58
39895984--39896063	12	7.1	10	95	4	63	33	0	32	33	1.58
39900983--39901057	26	2.9	26	73	0	69	28	34	9	28	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39906708--39906755	25	1.9	25	91	0	78	41	14	25	18	1.88
39906707--39906761	25	2.2	24	84	9	74	41	16	23	18	1.89
39910081--39910132	20	2.5	20	96	3	95	51	17	15	15	1.76
39910334--39910441	26	4.2	26	92	0	180	37	23	7	32	1.82
39912399--39912437	19	2.0	20	85	14	55	41	7	0	51	1.31
39912554--39912578	7	3.6	7	100	0	50	60	0	0	40	0.97
39914584--39914608	12	2.1	12	100	0	50	16	0	0	84	0.63
39924462--39924604	72	2.0	69	81	9	164	46	9	20	22	1.80
39924509--39924604	34	2.8	35	76	7	97	43	10	22	22	1.84
39928025--39928206	96	1.9	96	86	6	262	12	34	15	36	1.86
39935982--39936114	62	2.2	60	86	2	185	27	19	31	21	1.97
39941608--39941876	52	5.2	52	88	6	388	35	14	22	27	1.93
39941840--39941948	37	3.0	37	90	2	177	35	16	22	24	1.95
39955567--39955637	36	2.0	36	85	0	97	35	8	29	26	1.86
39955866--39956003	60	2.3	59	79	7	136	40	13	18	26	1.88
39957939--39957993	26	2.1	26	96	0	101	40	21	18	20	1.92
39972609--39972666	20	2.9	20	82	10	73	41	22	25	10	1.85
39978152--39978208	23	2.4	24	81	16	66	43	1	17	36	1.60
39978162--39978208	25	2.0	22	84	12	58	44	2	14	38	1.58
39978585--39978623	15	2.8	14	88	7	53	64	0	23	12	1.28
39978644--39978681	19	2.1	19	90	9	62	76	0	23	0	0.79
39979624--39979723	51	1.9	53	81	6	123	19	19	22	40	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39979866--39979912	18	2.6	18	77	12	51	44	10	14	29	1.79
39979902--39979942	18	2.3	19	79	12	50	41	9	9	39	1.71
39981478--39981513	13	2.8	13	95	4	65	30	13	22	33	1.93
39992958--39992993	17	2.1	18	94	5	65	19	0	5	75	1.00
39994209--39994253	20	2.1	23	84	12	60	35	2	0	62	1.08
39996330--39996484	46	3.4	46	77	7	147	20	20	14	44	1.86
39996413--39996536	45	2.8	45	86	2	160	23	20	14	41	1.89
39998948--39998995	22	2.2	22	92	0	78	20	35	20	22	1.96
40002091--40002143	26	2.0	27	85	7	74	24	15	22	37	1.92
40003618--40003725	26	4.2	26	93	0	189	36	24	7	32	1.83
40010213--40010265	26	2.0	26	82	7	63	24	15	20	39	1.91
40011750--40011909	26	6.2	26	91	0	266	36	23	7	33	1.83
40011750--40011909	52	3.1	52	96	0	293	36	23	7	33	1.83
40013520--40013674	55	2.8	55	74	2	152	20	23	18	38	1.93
40020887--40021093	53	3.8	53	75	3	189	20	23	17	38	1.93
40022373--40022546	86	2.0	86	96	0	321	34	10	9	44	1.73
40024026--40024140	60	1.9	60	82	3	142	42	12	4	40	1.62
40030493--40030517	3	8.3	3	100	0	50	68	0	0	32	0.90
40031291--40031320	11	2.6	12	89	10	53	36	16	0	46	1.47
40031657--40031691	15	2.3	15	100	0	70	34	0	5	60	1.21
40031686--40031720	11	3.3	11	92	4	54	62	0	0	37	0.95
40031652--40031704	22	2.3	24	77	9	65	39	0	3	56	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40035562--40035619	28	2.1	28	100	0	116	39	3	34	22	1.71
40035877--40035917	19	2.2	18	86	4	55	7	0	34	58	1.26
40039047--40039124	38	2.1	38	97	0	147	34	2	23	39	1.68
40040083--40040121	10	3.9	10	80	12	53	69	2	7	20	1.26
40040788--40040989	99	2.0	99	86	1	280	33	24	12	29	1.93
40041812--40041862	26	2.0	26	100	0	102	15	17	11	54	1.70
40043255--40043422	83	2.0	83	98	0	327	43	7	17	31	1.77
40045505--40045634	50	2.6	50	86	8	183	36	16	22	25	1.94
40045610--40045758	31	4.8	31	87	0	208	26	18	27	26	1.98
40045776--40045949	47	3.7	48	84	6	194	28	16	26	28	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325