genome.fa.s5.2.7.7.80.10.50.1000.179.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  179  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56440007--56440163	6	25.3	6	65	20	65	47	14	19	19	1.83
56440053--56440163	25	4.7	25	73	15	101	46	14	19	18	1.83
56440046--56440132	19	4.3	19	75	19	70	47	12	19	20	1.82
56440016--56440097	31	2.6	31	84	0	101	47	12	20	19	1.81
56440058--56440157	44	2.3	44	92	0	164	46	15	20	19	1.85
56440281--56440388	27	4.0	26	73	10	74	39	19	21	19	1.92
56440547--56440611	22	3.0	22	77	8	69	30	23	24	21	1.99
56440988--56441075	27	3.3	27	85	0	104	25	18	20	36	1.95
56441060--56441318	27	9.6	27	78	4	177	31	8	20	39	1.83
56441116--56441318	81	2.5	80	80	7	214	31	8	19	40	1.82
56441116--56441344	54	4.2	54	78	6	162	30	10	19	39	1.85
56443139--56443279	6	22.8	6	71	13	99	48	14	17	19	1.80
56443160--56443269	19	5.8	20	73	19	85	46	15	18	20	1.84
56443156--56443279	25	4.7	25	74	11	113	47	15	17	19	1.83
56443151--56443258	31	3.7	31	74	14	120	46	14	19	19	1.84
56443151--56443279	56	2.3	56	90	2	206	48	14	17	19	1.82
56443397--56443504	27	4.0	26	73	10	74	39	19	21	19	1.92
56443663--56443727	22	3.0	22	80	8	78	30	23	26	20	1.98
56444102--56444189	27	3.3	26	79	4	97	25	15	20	38	1.92
56444211--56444405	27	7.2	27	87	2	194	29	7	22	40	1.81
56444173--56444358	81	2.3	81	79	3	187	30	6	23	39	1.81
56444211--56444405	81	2.4	81	81	3	223	29	7	22	40	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56444387--56444442	27	2.1	27	89	0	85	32	19	16	32	1.94
56444261--56444431	81	2.1	81	80	4	184	29	9	20	39	1.85
56446292--56446482	6	31.0	6	66	16	79	49	12	17	20	1.79
56446328--56446420	25	3.7	25	83	0	114	49	13	16	20	1.79
56446328--56446422	50	1.9	50	86	0	136	49	13	15	21	1.79
56446353--56446482	62	2.1	62	86	0	179	47	11	17	23	1.80
56446415--56446482	25	2.7	25	88	0	100	45	10	20	23	1.81
56446378--56446473	37	2.6	37	83	5	113	46	12	19	20	1.82
56446600--56446697	27	3.7	26	81	9	99	38	18	22	20	1.93
56446651--56446707	27	2.1	27	83	6	71	40	24	19	15	1.90
56446866--56446930	22	3.0	22	77	8	69	30	21	26	21	1.98
56447306--56447423	62	1.9	62	91	3	193	24	22	17	35	1.95
56447374--56447448	27	2.8	27	93	0	132	25	22	17	34	1.96
56447440--56447504	27	2.4	27	73	0	67	29	4	27	38	1.77
56447493--56447672	27	6.7	26	83	7	155	29	9	21	40	1.84
56447494--56447672	81	2.2	81	79	6	184	29	9	20	40	1.84
56447494--56447672	54	3.3	53	79	4	171	29	9	20	40	1.84
56455163--56455215	26	2.0	26	100	0	106	30	7	26	35	1.84
56471937--56472003	34	2.0	34	90	0	107	26	23	23	25	2.00
56479142--56479171	15	2.0	15	100	0	60	33	33	0	33	1.58
56487591--56487725	64	2.1	65	86	4	184	34	14	5	44	1.70
56487777--56487830	19	2.8	19	82	0	63	7	33	18	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56492329--56492461	64	2.1	64	83	6	164	45	6	14	33	1.69
56492329--56492425	31	3.1	31	70	12	81	48	4	13	34	1.61
56493164--56493204	11	3.7	11	93	0	73	19	17	7	56	1.64
56493242--56493305	31	2.1	31	88	2	94	25	4	10	59	1.50
56494770--56494892	9	13.2	9	66	16	54	61	0	4	33	1.20
56495074--56495136	10	6.4	10	74	22	62	30	0	0	69	0.88
56495074--56495137	11	6.4	11	68	26	52	29	0	0	70	0.88
56495074--56495135	9	6.4	9	75	17	54	30	0	0	69	0.89
56495236--56495469	88	2.6	90	79	6	260	35	11	17	35	1.86
56495461--56495510	20	2.5	20	96	0	91	52	4	6	38	1.45
56502716--56502850	40	3.3	40	84	4	173	24	13	26	35	1.92
56506635--56506659	12	2.1	12	100	0	50	24	0	32	44	1.54
56510793--56510887	28	3.4	28	72	13	95	29	25	13	31	1.94
56510761--56510887	57	2.2	56	86	4	175	26	25	15	31	1.96
56516088--56516297	47	4.5	47	92	2	341	32	8	30	28	1.87
56516416--56516554	37	3.8	37	98	0	260	23	18	30	27	1.98
56517831--56518050	40	5.5	40	91	0	359	24	21	29	25	1.99
56522483--56522583	11	9.4	11	71	8	82	4	1	30	62	1.27
56522483--56522582	21	4.7	21	86	3	119	5	2	31	62	1.28
56522569--56522617	21	2.3	21	89	3	71	6	2	20	71	1.18
56523569--56523603	14	2.5	14	95	0	61	34	20	5	40	1.76
56526488--56526699	50	4.2	50	88	0	316	25	12	18	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56534447--56534758	50	6.2	50	93	0	516	25	12	19	41	1.86
56538302--56538486	40	4.6	39	81	9	180	24	22	27	25	2.00
56538355--56538519	79	2.1	79	82	6	192	26	20	27	26	1.99
56539938--56539964	8	3.4	8	100	0	54	44	22	0	33	1.53
56540157--56540192	19	1.9	19	94	5	65	5	25	0	69	1.10
56542585--56542640	26	2.1	27	84	12	73	51	12	12	23	1.73
56544560--56544740	96	1.9	96	87	0	263	38	14	11	35	1.81
56553619--56553827	46	4.5	45	74	13	165	28	19	29	23	1.98
56554480--56554541	31	2.0	31	93	0	106	27	8	20	43	1.80
56565491--56565619	43	3.0	44	78	6	156	24	16	28	30	1.96
56567995--56568038	21	2.1	21	91	0	70	52	6	9	31	1.59
56568818--56568849	8	4.0	8	100	0	64	75	0	0	25	0.81
56570943--56571194	68	3.9	64	77	10	174	24	27	17	30	1.97
56572939--56573094	45	3.4	45	78	5	161	21	19	12	46	1.83
56572975--56573095	45	2.7	46	85	5	165	20	20	13	45	1.84
56579298--56579345	23	2.1	23	100	0	96	12	8	8	70	1.32
56579305--56579358	23	2.3	23	90	0	81	9	12	11	66	1.44
56579371--56579409	17	2.2	18	90	4	62	43	0	0	56	0.99
56579370--56579416	18	2.6	18	83	10	60	44	0	0	55	0.99
56579370--56579420	19	2.8	18	79	11	59	43	0	0	56	0.99
56581481--56581536	23	2.4	23	93	0	94	35	19	19	25	1.95
56581808--56581832	10	2.5	10	100	0	50	32	0	0	68	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56591475--56591699	79	2.8	78	80	10	258	24	26	21	27	1.99
56591475--56591699	40	5.7	40	83	8	248	24	26	21	27	1.99
56591475--56591699	119	1.9	120	81	9	273	24	26	21	27	1.99
56593252--56593367	47	2.5	47	94	0	196	36	12	24	26	1.92
56593346--56593552	55	3.9	54	81	7	233	34	17	24	23	1.96
56597644--56597684	20	2.1	19	86	4	55	41	12	24	21	1.87
56601899--56602121	40	5.6	40	81	9	267	22	22	28	26	1.99
56601899--56602096	83	2.4	83	91	3	323	22	22	29	26	1.99
56609291--56609475	79	2.3	82	83	7	229	24	27	22	24	2.00
56609272--56609475	40	5.1	40	81	8	229	24	27	22	25	2.00
56613186--56613408	40	5.6	40	85	3	306	22	24	28	24	2.00
56613186--56613408	82	2.8	80	90	4	360	22	24	28	24	2.00
56615488--56615600	27	4.2	27	83	7	131	15	23	23	38	1.92
56615488--56615600	54	2.1	54	86	6	158	15	23	23	38	1.92
56617871--56617916	22	2.1	22	95	0	83	36	8	30	23	1.85
56621892--56621965	24	3.1	24	94	0	121	31	5	41	21	1.76
56624591--56624732	40	3.6	39	82	8	162	26	23	26	23	2.00
56631790--56631820	13	2.4	13	100	0	62	9	0	29	61	1.28
56632558--56632702	40	3.6	40	85	4	193	25	24	26	23	2.00
56636012--56636070	29	2.0	29	86	3	82	37	6	25	30	1.82
56636497--56636669	46	3.7	46	77	11	192	23	20	26	29	1.99
56636494--56636664	93	1.8	93	92	2	290	22	21	27	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
56638110--56638169	31	1.9	31	93	0	102	25	21	16	36	1.94
56638390--56638461	26	2.8	26	97	2	137	23	23	26	26	2.00
56639355--56639552	27	7.3	27	77	8	152	33	8	18	39	1.80
56639355--56639549	54	3.6	55	78	8	170	32	8	18	40	1.81
56639355--56639549	81	2.4	83	81	5	236	32	8	18	40	1.81
56640569--56640654	27	3.2	26	83	8	109	13	24	22	39	1.90
56642353--56642526	45	3.9	45	84	5	214	23	20	28	27	1.99
56645501--56645765	40	6.6	40	85	6	322	26	27	23	22	1.99
56645501--56645765	80	3.3	80	87	3	370	26	27	23	22	1.99
56651030--56651287	39	6.6	38	81	13	233	26	27	22	23	2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325