genome.fa.s5.2.7.7.80.10.50.1000.295.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  295  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94028181--94028258	36	2.2	36	86	9	106	37	14	11	37	1.82
94038688--94038795	26	4.2	26	92	0	180	33	5	25	36	1.79
94051596--94051678	29	2.8	30	74	7	89	31	22	16	28	1.96
94053262--94053334	36	2.0	36	100	0	146	35	30	9	24	1.87
94055597--94055704	26	4.2	26	90	0	171	33	6	23	37	1.80
94061001--94061042	20	2.1	20	100	0	84	23	33	9	33	1.87
94066029--94066072	22	2.0	22	100	0	88	36	22	9	31	1.86
94067138--94067197	28	2.1	28	96	0	111	16	25	23	35	1.95
94085248--94085288	21	2.0	21	90	0	64	19	29	21	29	1.98
94113010--94113074	30	2.1	32	85	5	89	44	1	0	53	1.09
94113009--94113080	31	2.4	28	80	15	81	44	1	0	54	1.08
94113078--94113114	18	2.2	18	85	9	51	40	2	0	56	1.13
94113602--94113648	17	2.8	17	81	12	60	65	2	2	29	1.15
94124219--94124249	15	2.1	15	100	0	62	35	12	25	25	1.92
94137887--94137920	17	1.9	18	94	5	61	38	0	14	47	1.45
94145115--94145327	89	2.4	88	84	7	286	35	18	10	35	1.85
94145447--94145574	10	12.6	10	65	17	50	63	3	1	32	1.19
94145472--94145546	18	4.0	19	75	11	66	64	2	0	33	1.08
94145502--94145552	19	2.8	18	77	13	52	66	1	1	29	1.13
94145502--94145573	9	7.8	9	74	11	56	62	2	2	31	1.24
94145764--94145928	10	17.2	10	66	15	64	32	5	1	61	1.27
94145807--94145904	29	3.4	27	75	18	83	30	6	2	61	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94145764--94145913	19	8.0	19	70	12	78	32	6	1	60	1.29
94145901--94145927	11	2.5	11	100	0	54	33	0	0	66	0.92
94148073--94148116	23	1.9	23	86	9	63	63	6	9	20	1.46
94149755--94150193	133	3.3	133	92	1	700	27	22	20	29	1.99
94157823--94157866	21	2.1	21	87	8	63	18	22	20	38	1.93
94162174--94162228	16	3.4	16	76	16	51	29	0	3	67	1.08
94163108--94163148	19	2.2	19	95	0	73	12	9	2	75	1.13
94180215--94180261	22	2.1	22	92	0	76	12	51	21	14	1.76
94183300--94183354	16	3.4	16	76	16	51	29	0	3	67	1.08
94184231--94184270	19	2.1	19	100	0	80	15	10	0	75	1.05
94190721--94190815	48	2.0	48	100	0	190	27	27	13	31	1.94
94191746--94191772	11	2.5	11	100	0	54	7	37	0	55	1.28
94196018--94196138	59	2.1	59	87	0	170	32	24	19	23	1.98
94196153--94196314	67	2.4	67	94	3	281	28	24	21	25	1.99
94195941--94196408	171	2.8	164	86	3	607	29	22	20	27	1.98
94196220--94196534	104	3.0	103	89	3	463	29	21	20	29	1.98
94199353--94199889	208	2.6	206	91	2	891	40	6	11	41	1.67
94203517--94203582	22	2.9	23	80	17	75	42	0	0	57	0.98
94203650--94203696	19	2.4	19	85	7	58	42	0	0	57	0.98
94203680--94203712	12	2.5	14	90	9	52	36	0	0	63	0.95
94203679--94203748	12	5.2	12	76	17	50	38	0	4	57	1.19
94203865--94203903	17	2.2	18	90	4	62	53	0	2	43	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94204103--94204147	17	2.7	16	80	10	54	40	0	4	55	1.20
94210518--94210586	21	3.3	21	87	0	75	28	27	27	15	1.96
94212045--94212080	15	2.3	17	81	18	51	0	30	0	69	0.89
94218380--94218466	21	4.0	23	80	10	92	37	25	21	14	1.92
94220202--94220249	20	2.4	19	78	18	53	45	18	0	35	1.50
94220933--94221030	21	5.2	19	75	18	73	59	0	0	40	0.98
94220933--94221033	18	5.2	20	75	19	81	59	0	0	40	0.97
94220951--94221033	17	4.5	18	79	13	80	61	0	0	38	0.96
94220918--94221021	17	6.3	15	72	22	52	57	0	0	42	0.98
94220970--94221044	38	2.1	36	85	9	100	62	0	0	37	0.95
94220993--94221044	22	2.3	23	83	16	72	61	0	0	38	0.96
94221126--94221169	24	1.9	23	90	9	72	72	4	2	20	1.13
94221783--94221827	17	2.5	20	79	17	53	60	4	0	35	1.17
94233178--94233295	56	2.1	57	95	3	220	38	5	15	40	1.69
94238292--94238629	173	2.0	172	95	0	613	33	15	19	31	1.93
94241506--94241550	24	1.9	23	81	4	54	33	4	6	55	1.46
94244946--94245038	35	2.7	35	84	0	132	30	9	25	34	1.88
94246243--94246291	24	2.0	24	88	0	71	36	10	32	20	1.86
94250522--94250570	23	2.1	23	96	0	89	53	4	14	28	1.59
94259437--94259494	25	2.2	27	81	9	75	31	13	12	43	1.81
94272445--94272474	15	1.9	16	93	6	53	46	0	0	53	1.00
94277088--94277205	40	2.9	41	82	6	141	33	27	14	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94288488--94288545	9	6.7	9	80	20	70	44	0	32	22	1.53
94292490--94292515	13	2.0	13	100	0	52	30	0	15	53	1.42
94293584--94293635	24	2.2	24	96	0	95	50	7	5	36	1.55
94293715--94293799	29	2.9	29	89	0	125	35	34	9	21	1.85
94296706--94296761	30	1.9	28	85	7	76	51	3	14	30	1.59
94296766--94296814	23	2.1	23	82	14	57	44	4	16	34	1.66
94298524--94298613	47	1.9	47	95	0	162	43	14	12	30	1.82
94301103--94301187	31	2.8	29	74	8	80	41	10	10	37	1.74
94304912--94304964	26	2.0	26	82	7	63	37	20	16	24	1.93
94307126--94307465	131	2.6	132	88	3	496	37	19	16	26	1.93
94309746--94310084	131	2.6	132	88	3	476	36	19	17	26	1.94
94312946--94313516	133	4.3	133	90	0	829	28	23	18	28	1.98
94313035--94313368	45	7.5	44	65	12	137	26	25	18	29	1.98
94313536--94313663	64	2.0	64	92	0	211	33	14	20	31	1.93
94318900--94319238	131	2.6	132	88	3	476	36	19	17	26	1.94
94324007--94324065	27	2.3	25	85	11	75	8	11	3	76	1.13
94330313--94330351	21	1.9	20	84	5	51	33	7	23	35	1.83
94331897--94331935	18	2.2	18	86	4	53	15	15	43	25	1.86
94332313--94332420	55	2.0	55	88	0	162	22	20	19	37	1.94
94349003--94349052	15	3.2	16	78	18	61	58	0	10	32	1.31
94349212--94349251	21	1.9	21	85	10	55	47	17	20	15	1.83
94354948--94355224	50	5.5	50	89	2	421	36	15	21	25	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94354948--94355224	100	2.8	100	93	0	464	36	15	21	25	1.94
94355251--94355414	49	3.6	48	82	8	182	29	14	26	29	1.95
94355294--94355457	42	3.7	43	80	9	163	29	14	26	29	1.95
94356101--94356151	23	2.2	23	100	0	102	43	7	15	33	1.76
94357697--94357734	2	19.0	2	94	0	67	0	52	0	47	1.00
94361424--94361473	20	2.6	19	77	3	55	56	0	6	38	1.24
94361645--94361705	10	6.4	10	74	9	56	32	1	1	63	1.13
94361662--94361704	19	2.3	19	88	11	63	37	2	0	60	1.10
94361663--94361705	18	2.2	20	92	8	72	34	2	0	62	1.08
94361821--94362044	94	2.5	89	77	12	247	37	8	13	40	1.75
94376269--94376351	44	1.9	43	83	11	107	24	18	26	31	1.97
94379535--94379560	6	4.3	6	100	0	52	19	0	0	80	0.71
94380385--94380412	11	2.5	11	100	0	56	21	14	35	28	1.92
94383353--94383390	10	3.9	10	83	16	53	84	5	0	10	0.77
94383350--94383393	13	3.6	13	77	22	51	84	4	0	11	0.77
94383977--94384031	13	4.5	13	77	13	71	40	0	10	49	1.38
94383991--94384043	23	2.3	23	86	3	70	45	0	11	43	1.40
94387688--94387717	15	2.0	15	100	0	60	60	6	13	20	1.55
94392404--94392509	53	2.0	53	98	0	203	40	16	9	33	1.80
94393300--94393339	16	2.5	16	88	8	55	62	0	2	35	1.09
94397363--94397404	14	2.9	14	89	3	57	47	0	4	47	1.23
94397999--94398114	34	3.4	34	74	7	128	48	18	6	26	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94398032--94398143	33	3.4	33	71	7	118	44	17	7	30	1.76
94397999--94398143	67	2.2	67	98	0	281	46	18	6	28	1.75
94403016--94403055	21	1.9	21	89	0	62	65	0	5	30	1.14
94403024--94403078	13	4.6	13	78	17	57	65	0	1	32	1.03
94403043--94403086	13	3.3	14	84	9	56	56	0	2	40	1.11
94408360--94408619	41	6.4	41	84	2	310	35	23	21	20	1.96
94408339--94408619	123	2.3	122	85	3	368	34	23	21	20	1.96
94409137--94409180	7	6.3	7	86	0	61	15	0	52	31	1.44
94409338--94409364	14	1.9	14	100	0	54	22	0	33	44	1.53
94409387--94409429	15	3.0	15	80	10	54	20	0	32	46	1.51

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325