Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  133  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41553384--41553431
8
6.2
8
79
20
50
56
0
4
39
1.19
41556572--41556596
2
12.5
2
100
0
50
48
0
0
52
1.00
41564675--41564892
40
5.5
40
87
4
275
24
27
23
23
2.00
41577730--41577764
18
1.9
18
94
0
61
17
25
17
40
1.90
41581875--41581963
44
2.0
44
84
4
117
37
25
19
17
1.94
41582848--41582890
5
9.0
5
90
10
72
41
0
0
58
0.98
41588883--41588954
31
2.4
31
81
6
85
56
8
6
27
1.54
41593518--41593567
25
2.0
25
84
7
66
70
2
6
22
1.20
41593962--41594011
18
2.8
18
85
11
59
34
2
0
64
1.05
41593891--41593990
37
2.6
36
75
17
96
31
6
3
60
1.36
41593962--41593998
18
2.1
19
90
10
60
29
0
0
70
0.88
41594633--41594672
17
2.4
17
86
0
62
62
2
0
35
1.09
41595151--41595182
3
10.7
3
100
0
64
31
0
0
68
0.90
41598113--41598163
26
1.9
27
88
4
77
47
0
23
29
1.52
41598135--41598159
12
2.1
12
100
0
50
56
0
16
28
1.41
41604895--41604932
14
2.9
13
81
11
51
18
13
10
57
1.63
41608354--41608429
36
2.1
36
82
0
89
19
13
26
40
1.88
41610701--41610876
46
3.8
46
79
12
207
20
20
29
29
1.98
41610697--41610868
93
1.8
93
93
0
299
20
20
30
28
1.98
41613104--41613225
46
2.5
48
84
5
149
26
22
14
36
1.93
41616439--41616494
29
1.9
29
85
7
78
10
16
17
55
1.69
41619229--41619404
46
3.8
46
77
16
184
21
19
28
30
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41619225--41619395
93
1.8
93
91
2
281
21
19
29
29
1.98
41621349--41621386
20
1.9
20
84
10
51
63
0
13
23
1.30
41621634--41621724
7
13.0
7
78
9
51
39
1
29
29
1.64
41621684--41621725
7
6.0
7
97
0
66
28
0
33
38
1.58
41630885--41630927
18
2.4
17
81
11
50
41
0
34
23
1.55
41631393--41631474
36
2.3
36
80
4
94
42
34
0
23
1.54
41631351--41631510
14
11.3
14
66
13
51
42
33
0
24
1.55
41631458--41631532
21
3.6
21
75
8
55
49
25
0
25
1.51
41631530--41631605
7
10.7
7
70
6
55
28
48
1
21
1.58
41631530--41631600
22
3.3
21
86
9
83
28
47
1
22
1.59
41631530--41631586
22
2.5
22
91
2
87
26
49
1
22
1.60
41632462--41632497
15
2.5
15
90
4
56
44
30
0
25
1.54
41632985--41633278
115
2.5
115
88
1
428
34
18
18
28
1.95
41632711--41633154
155
2.9
154
83
7
587
32
18
18
29
1.96
41633288--41633370
39
2.1
41
82
8
100
26
20
19
33
1.96
41636867--41636910
13
3.5
13
81
6
54
68
6
0
25
1.14
41638311--41638406
28
3.5
26
77
18
79
34
2
2
61
1.19
41638334--41638378
19
2.4
18
82
10
54
37
2
2
57
1.23
41638316--41638397
20
4.3
19
75
17
71
36
2
2
58
1.24
41638325--41638413
9
9.4
10
71
25
61
38
2
2
57
1.24
41639310--41639380
19
4.0
18
78
20
78
56
1
0
42
1.08
41639819--41639864
20
2.3
20
84
0
56
36
2
4
56
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41641466--41641566
27
3.7
27
75
10
71
18
31
18
30
1.96
41641477--41641567
27
3.4
27
76
0
83
17
31
18
31
1.94
41644902--41644980
34
2.3
34
95
0
140
45
17
5
31
1.70
41645926--41646125
43
4.7
42
88
5
179
28
29
17
25
1.97
41645909--41646125
86
2.5
86
88
3
303
28
29
17
24
1.97
41650344--41650429
38
2.2
38
91
2
136
26
22
15
36
1.93
41653286--41653869
290
2.0
290
98
0
1143
34
6
23
35
1.81
41653790--41654334
47
11.6
47
92
0
883
33
8
29
29
1.87
41659176--41659206
12
2.6
12
100
0
62
22
35
16
25
1.94
41659994--41660028
5
7.0
5
100
0
70
40
0
0
60
0.97
41661153--41661183
12
2.6
12
89
0
53
16
19
16
48
1.81
41669573--41669935
47
7.8
45
74
16
260
22
30
20
26
1.98
41669572--41669932
94
3.9
94
80
9
391
22
29
20
27
1.98
41669573--41669935
141
2.6
137
80
10
378
22
30
20
26
1.98
41673289--41673339
26
2.0
25
82
14
61
49
23
0
27
1.51
41689586--41689667
31
2.7
30
77
7
85
32
2
12
52
1.52
41694383--41694428
23
2.0
23
84
12
60
45
10
6
36
1.65
41694390--41694434
23
2.0
23
82
8
56
40
13
8
37
1.76
41700759--41700802
22
2.0
22
100
0
88
13
27
9
50
1.72
41713295--41713340
23
2.0
23
84
12
60
45
10
6
36
1.65
41713302--41713351
23
2.2
22
82
10
57
40
14
8
38
1.75
41716412--41716455
20
2.2
20
91
0
70
6
20
11
61
1.52
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41716458--41716509
20
2.6
20
74
17
54
17
28
13
40
1.87
41719929--41720111
49
3.7
49
85
2
258
30
25
19
25
1.98
41719928--41720108
100
1.8
100
95
0
326
30
24
19
25
1.98
41722883--41722926
21
2.0
22
86
4
63
54
15
6
22
1.65
41726016--41726079
34
1.9
34
90
3
103
31
17
18
32
1.94
41726087--41726149
15
4.2
15
74
8
65
26
22
20
30
1.98
41726089--41726146
30
1.9
30
89
6
91
24
24
22
29
1.99
41726087--41726211
15
8.5
14
69
19
60
28
19
20
31
1.97
41727793--41727964
43
4.0
43
76
12
174
27
14
23
34
1.94
41736932--41737003
26
2.7
27
82
6
85
36
23
8
31
1.85
41737108--41737248
27
5.3
27
91
2
196
19
21
23
35
1.96
41738463--41738637
49
3.6
47
76
6
154
25
29
17
28
1.98
41740441--41740483
21
2.0
21
86
4
59
30
6
18
44
1.76
41747618--41747665
18
2.5
19
80
13
53
25
0
8
66
1.19
41747632--41747673
20
2.0
20
86
13
59
21
0
11
66
1.23
41747635--41747669
18
1.9
18
100
0
70
22
0
8
68
1.16
41755127--41755289
30
5.4
30
74
13
106
23
26
12
37
1.90
41755093--41755346
90
2.9
88
81
9
266
24
27
12
35
1.92
41755098--41755346
29
8.3
30
75
11
147
24
26
12
36
1.92
41757380--41757417
18
2.1
18
85
9
51
52
0
26
21
1.47
41776577--41776655
30
2.6
30
78
11
79
25
22
15
36
1.93
41776639--41776709
29
2.4
29
85
2
97
21
28
9
40
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41776486--41776761
121
2.3
119
79
11
291
23
25
11
38
1.89
41776695--41776761
29
2.5
26
80
11
73
26
25
7
40
1.82
41778501--41778543
18
2.4
19
80
11
54
74
13
4
6
1.19
41779243--41779295
29
1.9
26
85
11
70
50
3
18
26
1.64
41779805--41779976
43
4.0
43
89
6
235
26
19
25
28
1.99
41791470--41791531
25
2.5
25
97
2
117
38
3
40
17
1.66
41792763--41792871
27
4.0
26
83
8
128
15
23
22
37
1.93
41792763--41792871
54
2.0
54
87
3
157
15
23
22
37
1.93
41795514--41795548
18
2.0
18
94
5
63
80
8
0
11
0.92
41800151--41800229
39
2.0
39
100
0
158
45
10
5
39
1.60
41801330--41801586
61
4.2
62
82
5
281
22
24
25
27
2.00
41801360--41801586
122
1.8
124
87
3
343
21
23
25
29
1.99
41802147--41802220
17
4.6
16
72
11
62
71
1
22
4
1.10
41807044--41807079
18
2.0
18
94
0
63
25
11
13
50
1.75
41810927--41810974
20
2.5
20
76
13
55
35
6
0
58
1.23
41814027--41814076
10
5.0
10
82
0
64
24
2
2
72
1.06
41815750--41815784
15
2.3
15
90
0
52
65
0
0
34
0.93
41815740--41815783
21
2.1
20
83
8
52
63
0
0
36
0.95
41816132--41816185
26
2.1
25
86
10
74
40
0
0
59
0.98
41816111--41816191
26
3.0
27
75
17
69
41
2
1
54
1.21
41819301--41819333
3
11.0
3
100
0
66
66
0
33
0
0.92
41821934--41821983
26
1.9
26
84
8
66
42
2
16
40
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
41822900--41822975
22
3.6
22
75
10
86
48
2
0
48
1.15
41822932--41823065
60
2.2
61
83
12
161
53
2
0
42
1.21
41826124--41826218
50
1.9
50
86
4
138
20
27
18
33
1.96
41826114--41826289
75
2.4
74
80
6
185
21
27
19
31
1.97
41826112--41826239
50
2.6
49
76
8
132
18
28
20
32
1.96
41826132--41826289
25
6.3
25
76
2
111
21
27
19
31
1.97
41829437--41829550
33
3.5
33
80
7
133
31
23
11
33
1.90
41832720--41832753
15
2.3
15
90
5
52
50
5
5
38
1.51
41833601--41833636
13
2.8
13
95
0
63
41
19
8
30
1.81
41834277--41834311
14
2.5
14
90
0
52
28
11
25
34
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325