Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  94  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31058297--31058357
5
12.0
5
80
13
54
81
1
13
3
0.88
31058427--31058513
18
5.1
17
68
17
54
60
5
21
11
1.51
31064008--31064096
44
2.0
44
97
0
169
37
28
10
24
1.88
31065299--31065348
26
1.9
27
84
8
68
24
16
22
38
1.93
31066825--31066882
26
2.2
26
100
0
116
37
25
3
32
1.73
31069290--31069373
26
3.2
26
96
0
150
36
25
4
33
1.77
31070134--31070167
13
2.6
13
95
0
59
29
41
23
5
1.78
31071335--31071415
25
3.3
25
76
10
78
32
18
25
23
1.97
31071305--31071416
49
2.3
48
80
9
118
32
20
24
23
1.98
31071335--31071437
49
2.1
50
81
5
120
34
17
25
22
1.95
31071433--31071498
24
2.7
24
77
15
73
46
21
18
13
1.83
31077680--31077716
19
2.0
19
94
5
67
35
0
0
64
0.94
31077667--31077722
19
2.7
20
78
21
62
35
1
0
62
1.06
31077695--31077737
14
3.1
14
80
12
52
32
0
0
67
0.91
31077707--31077748
21
2.0
22
86
13
61
30
0
0
69
0.89
31077715--31077757
21
2.0
21
81
9
50
37
0
2
60
1.10
31081094--31081150
23
2.5
23
85
0
78
63
7
1
28
1.30
31081114--31081162
23
2.1
23
88
3
71
63
12
2
22
1.39
31089349--31089379
16
1.9
16
100
0
62
51
0
25
22
1.48
31094557--31094666
26
4.2
26
97
0
184
36
24
5
33
1.79
31096499--31096542
20
2.2
20
84
8
54
13
25
40
20
1.89
31098836--31098869
18
1.9
18
94
5
61
67
0
0
32
0.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31109143--31109204
27
2.3
27
97
0
115
40
12
14
32
1.84
31109530--31109575
3
15.7
3
81
4
58
0
34
0
65
0.93
31109530--31109575
20
2.2
21
92
3
76
0
34
0
65
0.93
31109529--31109582
12
4.6
12
79
4
56
0
35
0
64
0.94
31119945--31119984
5
8.0
5
100
0
80
40
0
0
60
0.97
31130759--31130790
11
2.8
12
90
9
57
65
0
9
25
1.22
31131693--31131740
20
2.5
20
86
3
62
64
2
6
27
1.28
31133144--31133214
10
7.9
9
86
10
69
78
0
1
19
0.82
31133156--31133221
5
13.4
5
84
15
93
80
0
1
18
0.79
31135836--31135867
12
2.7
12
100
0
64
65
0
9
25
1.22
31136771--31136818
20
2.5
20
86
3
62
64
2
6
27
1.28
31136842--31136871
15
2.0
15
93
0
51
40
10
0
50
1.36
31139068--31139100
16
2.1
16
94
0
57
21
18
9
51
1.73
31142451--31142508
30
2.0
29
86
6
82
24
10
5
60
1.49
31142803--31142840
11
3.3
12
82
14
53
31
2
0
65
1.06
31142798--31142923
22
5.3
22
69
20
76
34
7
0
57
1.31
31142798--31142880
22
3.3
23
75
22
78
36
4
0
59
1.19
31142994--31143036
20
2.2
19
88
12
61
39
0
2
58
1.11
31143215--31143240
7
3.7
7
100
0
52
42
0
0
57
0.98
31143434--31143492
30
2.0
30
86
0
82
28
8
5
57
1.50
31146990--31147034
15
3.1
15
79
17
51
22
24
13
40
1.90
31155005--31155722
119
6.0
119
89
2
999
33
16
18
31
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31155005--31155724
241
3.0
240
91
1
1151
33
16
18
31
1.93
31157460--31157548
18
4.9
18
71
16
67
31
4
3
60
1.33
31157506--31157552
20
2.3
20
89
7
69
36
2
0
61
1.08
31157921--31157946
7
3.7
7
100
0
52
42
0
0
57
0.98
31158142--31158200
30
2.0
30
86
0
82
28
8
5
57
1.50
31159450--31159503
23
2.3
24
75
15
60
18
1
16
62
1.41
31159789--31160111
127
2.5
127
85
0
430
25
16
21
36
1.94
31162573--31162660
5
17.6
5
69
21
60
60
1
3
35
1.21
31162573--31162695
17
6.8
18
68
21
80
60
1
4
32
1.27
31162589--31162672
20
4.1
20
75
20
75
60
2
5
30
1.33
31162568--31162648
34
2.5
33
80
7
94
59
0
3
37
1.15
31163247--31163290
17
2.6
17
96
0
79
13
54
31
0
1.39
31164383--31164773
45
8.2
46
73
12
253
25
27
14
32
1.95
31164305--31164579
142
2.0
140
87
1
397
25
26
14
32
1.95
31164445--31164670
90
2.5
90
91
0
353
26
27
14
31
1.95
31164278--31164718
232
1.9
230
90
1
704
26
26
14
32
1.95
31164623--31164773
52
2.9
52
89
6
234
24
28
13
33
1.94
31176793--31176922
5
26.2
5
70
20
87
63
0
2
33
1.13
31176793--31176957
17
9.4
18
69
21
102
63
1
3
32
1.17
31176817--31176957
34
4.3
31
78
12
117
62
1
3
32
1.21
31176796--31176910
25
4.5
25
77
12
101
62
0
2
34
1.09
31176803--31176904
54
1.9
53
86
5
145
61
0
2
35
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31176799--31176957
32
4.9
31
78
15
101
63
1
3
32
1.18
31176985--31177056
26
2.8
25
81
8
74
66
0
2
30
1.06
31186235--31186393
17
8.8
18
84
6
207
37
13
11
37
1.81
31186235--31186385
35
4.2
35
93
2
248
37
13
11
37
1.81
31186724--31187637
207
4.4
207
93
0
1481
29
23
16
30
1.96
31187773--31187930
87
1.8
86
89
4
248
21
24
25
28
1.99
31194672--31194830
17
8.8
18
84
5
198
37
13
10
37
1.80
31194672--31194822
35
4.2
35
92
2
239
37
13
11
37
1.80
31198440--31198795
44
8.0
44
64
9
125
30
16
26
26
1.96
31198556--31198768
88
2.4
88
85
0
302
27
16
27
28
1.97
31198773--31198970
88
2.2
88
88
1
290
31
20
23
24
1.98
31202162--31202198
19
1.9
19
89
10
58
59
13
0
27
1.35
31204527--31204624
19
5.1
19
94
2
160
34
10
18
36
1.85
31210263--31210327
22
3.0
21
86
8
94
83
0
16
0
0.66
31210262--31210329
16
4.5
14
83
10
73
83
0
16
0
0.64
31210264--31210329
17
3.8
17
79
18
73
83
0
16
0
0.65
31211285--31211385
44
2.3
44
93
1
168
29
22
20
26
1.99
31211444--31212455
220
4.6
220
92
0
1580
32
17
21
27
1.96
31212224--31212406
87
2.1
89
82
10
216
33
18
21
26
1.96
31212785--31212865
19
4.2
19
93
3
135
35
9
18
35
1.84
31221309--31221360
24
2.2
24
89
0
77
55
9
1
32
1.43
31231118--31231142
9
2.8
9
100
0
50
80
0
20
0
0.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31231498--31231551
10
5.1
10
76
10
54
3
16
0
79
0.87
31231498--31231552
22
2.5
22
82
2
58
3
18
0
78
0.90
31231691--31231736
17
2.7
18
83
10
60
10
0
41
47
1.38
31240618--31240925
38
8.1
38
89
0
456
38
24
20
16
1.93
31250111--31250143
16
2.1
16
94
0
57
21
18
9
51
1.73
31253495--31253552
30
2.0
29
86
6
82
24
10
5
60
1.49
31253848--31253891
10
4.2
11
80
11
56
36
2
0
61
1.09
31253850--31253966
24
5.0
22
67
19
67
34
7
0
57
1.33
31253845--31253909
22
2.7
24
79
16
71
36
4
0
58
1.19
31254038--31254080
20
2.2
19
88
12
61
39
0
2
58
1.11
31254259--31254284
7
3.7
7
100
0
52
42
0
0
57
0.98
31254481--31254539
30
2.0
30
86
0
82
28
8
5
57
1.50
31258041--31258085
15
3.1
15
79
17
51
22
24
13
40
1.90
31270499--31270558
25
2.4
24
76
15
59
30
0
1
68
0.99
31270539--31270636
38
2.7
36
72
13
85
33
5
1
60
1.26
31288917--31288966
26
1.9
26
88
8
75
34
0
2
64
1.05
31288909--31289022
22
5.7
19
70
18
56
32
2
1
63
1.19
31288894--31288967
22
4.1
19
68
25
52
31
0
1
67
0.99
31288918--31288979
26
2.3
26
78
15
65
33
3
1
61
1.22
31300161--31300190
3
10.0
3
100
0
60
66
0
0
33
0.92
31301141--31301227
43
2.0
43
91
4
140
29
12
31
26
1.93
31301184--31301401
87
2.5
87
93
0
364
26
15
27
30
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
31305991--31306049
24
2.3
26
80
17
77
54
23
8
13
1.66
31306000--31306049
24
2.1
24
96
0
91
56
24
6
14
1.60
31331798--31331832
17
2.1
17
100
0
70
65
0
0
34
0.93
31334233--31334908
334
2.0
334
95
0
1226
34
20
11
33
1.89
31336176--31336204
9
3.2
9
100
0
58
20
0
0
79
0.74
31336381--31336419
16
2.4
16
83
12
53
48
0
0
51
1.00
31337269--31337343
27
2.8
27
81
0
87
28
30
22
18
1.97
31339926--31339972
18
2.5
19
80
13
53
61
6
0
31
1.21
31347567--31347676
55
2.0
55
100
0
220
54
5
18
21
1.63
31348862--31348886
7
3.6
7
100
0
50
44
0
0
56
0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325