genome.fa.s5.2.7.7.80.10.50.1000.146.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  146  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46359961--46360085	48	2.7	47	80	8	148	29	20	26	24	1.99
46362352--46362521	93	1.8	92	86	3	243	30	17	27	24	1.97
46362349--46362611	46	5.8	45	76	10	221	28	19	27	25	1.98
46367471--46367508	16	2.3	16	95	4	67	18	5	18	57	1.58
46377535--46378075	47	11.5	47	95	1	886	33	8	29	29	1.87
46378193--46378271	37	2.1	37	92	0	131	25	18	30	25	1.98
46383363--46383696	48	6.9	48	78	1	310	26	28	19	26	1.99
46383363--46383693	96	3.4	95	86	3	412	25	28	19	26	1.99
46393140--46393195	20	2.8	20	81	10	62	21	35	23	19	1.96
46408305--46408415	28	3.9	29	81	6	113	26	14	31	27	1.95
46411100--46411155	26	2.1	27	90	3	87	30	14	26	28	1.95
46418258--46418307	25	2.0	25	96	0	91	42	18	20	20	1.90
46420513--46420642	64	2.0	64	98	0	251	34	10	11	43	1.76
46422969--46423158	40	4.8	40	92	1	310	23	22	28	26	1.99
46422969--46423184	40	5.4	39	90	4	294	24	22	27	25	2.00
46426620--46426671	27	1.9	27	88	7	79	17	23	26	32	1.96
46432326--46432470	40	3.6	40	84	4	184	24	26	24	25	2.00
46433659--46433734	38	2.0	38	100	0	152	31	23	13	31	1.93
46447783--46447852	34	2.1	34	97	0	131	35	14	8	41	1.76
46454399--46454836	47	9.4	47	93	2	697	33	8	28	28	1.87
46454954--46455030	36	2.1	36	83	9	95	25	18	29	25	1.98
46459614--46459680	27	2.5	27	83	9	91	29	16	14	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46459614--46459926	54	5.8	55	76	9	141	30	11	19	38	1.88
46459661--46459789	27	4.8	27	76	9	120	28	9	20	41	1.83
46459632--46459789	81	2.0	81	80	7	178	29	10	20	40	1.85
46459768--46459923	27	5.8	27	76	7	131	30	10	21	37	1.87
46459822--46459909	26	3.3	26	87	6	115	29	11	22	36	1.89
46462515--46462826	40	7.8	40	92	2	484	23	27	23	25	2.00
46468590--46468679	29	3.1	28	84	4	117	31	13	25	30	1.94
46470965--46470998	18	1.9	17	94	5	59	44	17	20	17	1.87
46471333--46471487	27	6.0	27	77	11	146	41	21	14	21	1.89
46471418--46471456	19	2.1	19	90	0	60	43	12	17	25	1.85
46471391--46471483	46	2.0	46	89	0	141	44	17	13	24	1.85
46472131--46472163	15	2.2	15	89	10	50	63	3	27	6	1.32
46478760--46478827	28	2.4	29	85	7	97	30	30	11	26	1.92
46478826--46478877	2	26.0	2	100	0	104	50	50	0	0	1.00
46481693--46481914	40	5.7	40	83	10	239	25	20	27	26	1.99
46484930--46485109	40	4.5	40	80	6	188	22	27	23	26	2.00
46485418--46485496	29	2.7	29	82	5	97	27	31	15	25	1.95
46485478--46485622	43	3.4	43	99	0	283	26	35	15	22	1.94
46487477--46487555	37	2.1	37	88	4	115	25	30	18	25	1.98
46487674--46488480	47	17.4	47	93	2	1348	29	29	8	32	1.87
46487725--46488480	320	2.3	322	97	1	1426	29	29	8	32	1.87
46491154--46491271	42	2.8	43	76	2	114	32	27	13	26	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46491325--46491463	37	3.8	37	82	6	160	25	29	17	27	1.97
46494011--46494080	28	2.5	29	86	6	101	30	31	12	25	1.93
46494079--46494106	2	14.0	2	100	0	56	50	50	0	0	1.00
46499624--46499777	42	3.6	43	74	9	127	32	25	16	24	1.96
46501299--46501363	31	2.1	32	91	5	107	29	26	15	29	1.96
46501610--46501679	25	2.8	25	91	0	122	25	22	25	25	2.00
46507707--46507769	27	2.3	27	83	0	72	30	12	22	34	1.91
46512622--46512681	27	2.3	26	85	2	75	35	20	23	21	1.96
46512720--46512771	27	2.0	26	84	3	68	34	21	26	17	1.95
46520596--46520643	23	2.0	23	92	4	78	20	18	10	50	1.76
46520712--46520913	55	3.8	53	83	6	214	21	23	17	37	1.94
46521063--46521139	39	2.0	39	100	0	154	41	19	7	31	1.80
46523192--46523347	42	3.7	42	73	13	149	30	26	19	23	1.98
46532066--46532206	28	5.0	28	77	0	129	28	29	11	31	1.91
46532067--46532206	56	2.5	56	79	0	145	28	28	11	31	1.92
46532339--46532375	18	2.1	18	100	0	74	45	10	16	27	1.80
46533888--46534051	54	3.0	54	83	5	197	25	22	17	34	1.96
46533909--46534051	27	5.3	27	85	1	189	25	20	17	36	1.94
46533905--46534052	54	2.7	54	86	2	208	25	20	17	36	1.94
46541070--46541446	48	7.9	48	96	0	664	35	6	27	31	1.81
46541591--46541689	37	2.7	37	90	0	162	25	20	31	23	1.98
46559541--46559655	31	3.7	31	94	1	196	28	26	16	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46559679--46559770	42	2.2	42	96	0	166	33	20	14	31	1.92
46559918--46559987	25	2.8	25	86	4	97	25	24	25	24	2.00
46560905--46561083	27	6.6	27	74	10	96	35	7	17	39	1.79
46560997--46561091	27	3.5	26	82	5	109	31	5	20	43	1.74
46561130--46561195	27	2.4	27	85	5	89	39	7	22	30	1.82
46562736--46562946	28	7.5	28	91	3	336	33	28	11	26	1.91
46562736--46562946	113	1.9	111	92	2	350	33	28	11	26	1.91
46562735--46562971	57	4.2	57	91	4	347	33	28	12	25	1.92
46564761--46564883	27	4.6	27	78	0	138	39	10	21	28	1.87
46564759--46564877	54	2.2	54	84	0	157	37	10	22	28	1.88
46565323--46565359	6	6.5	6	81	12	51	83	0	16	0	0.64
46565323--46565359	17	2.2	17	90	0	56	83	0	16	0	0.64
46566619--46566834	40	5.4	40	91	2	312	22	22	28	25	1.99
46572359--46572604	79	3.2	78	81	10	272	26	21	26	25	2.00
46572352--46572571	40	5.7	40	84	10	278	24	22	27	25	2.00
46577896--46578067	37	4.6	38	81	12	189	26	26	22	24	2.00
46586447--46586590	40	3.6	40	80	9	125	26	27	22	23	1.99
46588644--46588847	40	5.1	40	87	2	277	22	23	27	26	1.99
46592425--46592528	31	3.4	31	95	1	183	28	25	17	28	1.97
46592563--46592696	42	3.2	42	98	0	259	33	20	14	31	1.93
46592844--46592913	25	2.8	25	91	4	106	24	24	27	24	2.00
46593757--46593991	27	8.7	27	78	7	163	31	8	20	40	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46593760--46593991	54	4.3	53	76	6	180	30	8	20	40	1.82
46593842--46593991	81	1.9	81	84	5	205	28	7	22	42	1.80
46593842--46594019	54	3.3	54	78	6	173	28	8	21	41	1.83
46593842--46594019	81	2.2	81	81	7	202	28	8	21	41	1.83
46593842--46594031	27	7.0	26	78	7	130	28	9	22	40	1.85
46594023--46594222	27	7.4	27	80	8	185	40	8	24	28	1.83
46594011--46594222	81	2.6	81	84	5	286	39	8	23	28	1.84
46594011--46594222	54	3.9	54	79	6	243	39	8	23	28	1.84
46596067--46596132	32	2.1	32	100	0	132	15	3	24	57	1.52
46600738--46600918	40	4.6	40	91	2	269	20	27	24	27	1.99
46604922--46605142	47	4.7	45	74	12	155	24	28	17	28	1.97
46611704--46611782	29	2.7	29	78	5	88	13	16	30	39	1.88
46623445--46623492	22	2.1	24	85	14	66	39	6	0	54	1.26
46637429--46637486	29	2.0	29	89	0	89	31	24	3	41	1.71
46639678--46639855	28	6.4	28	91	1	268	26	10	26	35	1.89
46647778--46647956	28	6.4	28	92	1	279	27	11	26	34	1.91
46653471--46653629	39	4.1	39	93	0	264	26	22	23	27	1.99
46656499--46656554	28	2.0	28	96	0	103	17	19	32	30	1.95
46660144--46660209	32	2.1	32	100	0	132	24	24	18	33	1.97
46662406--46662532	50	2.6	49	89	3	184	29	29	15	25	1.96
46665544--46665721	87	2.0	87	92	0	293	24	2	44	28	1.68
46666937--46666974	20	1.9	20	94	0	67	18	21	36	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46680508--46680877	27	13.9	27	74	11	271	31	12	19	37	1.88
46680495--46680878	53	7.2	53	79	9	261	30	13	19	36	1.89
46681208--46681233	12	2.2	12	100	0	52	7	15	30	46	1.74
46681258--46681585	41	8.1	41	85	7	239	30	22	25	21	1.99
46681289--46681583	41	7.3	40	87	6	375	28	23	26	21	1.99
46681265--46681581	82	3.9	81	89	4	437	28	23	26	21	1.99
46682198--46682246	24	2.0	24	100	0	98	53	0	4	42	1.20
46682713--46682747	7	4.9	7	86	6	52	82	0	0	17	0.66
46682712--46682747	15	2.4	15	80	0	54	83	0	0	16	0.65
46682752--46682779	7	4.0	7	100	0	56	42	0	0	57	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325