genome.fa.s5.2.7.7.80.10.50.1000.132.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  132  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41263993--41264033	3	13.7	3	94	0	73	34	2	0	63	1.08
41265418--41265560	35	4.1	35	79	6	146	40	15	20	23	1.90
41265428--41265560	69	1.9	70	82	1	169	39	15	20	24	1.91
41266806--41266840	7	5.3	7	93	6	56	14	71	0	14	1.15
41266806--41266839	6	5.3	6	89	10	50	14	70	0	14	1.17
41266806--41266840	13	2.6	14	86	13	56	14	71	0	14	1.15
41268974--41269032	22	2.7	22	89	0	82	38	16	20	23	1.92
41270589--41270836	3	84.0	3	65	15	61	28	7	3	60	1.40
41270745--41270788	17	2.6	17	82	7	54	29	4	4	61	1.36
41270745--41270847	20	4.9	20	68	13	64	30	8	2	58	1.43
41275334--41275410	30	2.6	30	83	8	102	40	7	6	45	1.59
41279599--41279624	2	13.0	2	100	0	52	50	0	0	50	1.00
41283347--41283387	21	2.0	21	90	0	64	19	29	21	29	1.98
41291221--41291284	33	1.9	33	90	0	101	34	9	23	32	1.87
41295308--41295342	18	2.0	18	88	5	54	54	2	0	42	1.15
41297582--41297629	16	3.1	16	80	14	57	45	0	0	54	0.99
41297881--41297923	20	2.1	20	86	4	59	46	2	4	46	1.36
41308053--41308275	119	1.9	120	83	6	292	25	27	21	24	1.99
41308032--41308275	40	6.1	40	83	6	282	25	27	21	25	1.99
41309399--41309518	56	2.1	56	100	0	240	22	24	9	44	1.82
41312708--41313212	49	10.6	49	90	4	802	32	8	29	29	1.86
41312708--41313212	96	5.3	96	94	1	845	32	8	29	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41320760--41320981	79	2.8	79	83	8	281	25	28	21	24	1.99
41320741--41320983	40	6.1	40	83	7	282	25	27	21	25	1.99
41322111--41322230	56	2.1	56	98	0	231	22	23	9	45	1.81
41323319--41323380	32	1.9	32	100	0	124	22	29	29	19	1.98
41340205--41340287	41	2.0	41	97	0	157	37	7	10	44	1.67
41340354--41340403	23	2.2	23	96	0	91	40	4	16	40	1.67
41351195--41351220	5	5.2	5	100	0	52	19	0	0	80	0.71
41351792--41351820	6	4.8	6	100	0	58	0	0	17	82	0.66
41356317--41356353	19	1.9	19	88	0	56	75	2	5	16	1.10
41369734--41369768	16	2.2	17	90	10	56	80	0	11	8	0.92
41373981--41374019	18	2.2	18	86	9	53	61	0	7	30	1.24
41374808--41374834	7	3.9	7	100	0	54	59	0	14	25	1.36
41375625--41375746	60	2.0	60	98	0	235	35	8	21	35	1.83
41379358--41379577	43	5.1	42	83	8	221	29	28	17	25	1.97
41379358--41379577	86	2.6	86	86	2	282	29	28	17	25	1.97
41380320--41380350	15	2.1	15	93	0	53	54	25	0	19	1.44
41384846--41385163	46	6.8	46	75	12	213	22	30	20	27	1.98
41390752--41390777	9	2.9	9	100	0	52	11	0	76	11	1.01
41392663--41392820	46	3.4	45	82	11	164	23	29	19	27	1.98
41395312--41395417	5	21.2	5	86	7	144	41	21	0	35	1.60
41395960--41395997	20	1.9	19	89	5	58	63	5	28	2	1.30
41402624--41402797	77	2.3	77	88	2	269	33	27	17	21	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41408661--41408700	22	1.9	22	90	10	66	17	27	45	10	1.80
41409310--41409343	17	2.0	17	100	0	68	29	29	17	23	1.97
41420594--41420720	46	2.8	45	83	11	168	23	32	18	25	1.97
41423788--41423838	18	2.7	20	76	17	54	33	0	1	64	1.05
41425331--41425366	18	2.0	18	94	0	63	19	27	11	41	1.85
41425332--41425374	18	2.4	18	88	0	59	18	27	6	46	1.75
41427832--41427900	35	2.0	35	91	0	111	40	26	4	28	1.75
41428938--41429009	25	2.9	25	95	0	126	22	23	2	51	1.61
41429160--41429214	28	2.0	28	82	7	67	34	16	5	43	1.71
41429082--41429379	126	2.4	126	93	1	499	28	19	14	37	1.91
41432059--41432083	13	1.9	13	100	0	50	32	4	24	40	1.73
41433186--41433342	43	3.7	43	81	12	189	22	17	27	31	1.97
41446670--41446954	36	7.7	36	70	12	173	37	14	11	36	1.83
41446758--41446942	18	10.3	18	75	9	144	37	15	12	34	1.85
41446753--41446954	72	2.8	71	77	6	192	36	14	12	36	1.84
41446672--41446954	18	15.3	18	71	11	133	37	14	11	36	1.83
41447071--41447187	47	2.5	47	87	2	164	40	22	21	16	1.91
41447170--41447279	45	2.4	45	84	0	148	41	19	19	20	1.90
41447156--41447294	45	2.8	49	76	12	142	41	20	19	18	1.90
41447257--41447281	12	2.1	12	100	0	50	40	20	24	16	1.91
41448787--41448831	19	2.4	18	86	13	65	0	33	0	66	0.92
41457266--41457487	87	2.5	87	78	3	232	36	21	7	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41457614--41457672	19	3.2	18	76	9	57	62	0	1	35	1.05
41457614--41457666	20	2.8	20	77	13	58	60	0	1	37	1.08
41457639--41457675	9	3.8	10	86	13	51	62	0	0	37	0.96
41457665--41457770	31	3.2	32	76	14	92	63	4	3	28	1.32
41457593--41457770	68	2.6	69	79	11	181	64	3	2	29	1.24
41457680--41457810	67	1.9	68	84	4	176	63	3	6	27	1.33
41458012--41458124	9	11.6	10	69	13	58	31	3	3	61	1.30
41458012--41458080	19	3.6	19	73	7	68	33	4	4	57	1.38
41458103--41458155	21	2.5	22	78	9	65	28	0	0	71	0.86
41458074--41458134	29	2.1	30	84	9	81	34	1	1	62	1.15
41458258--41458529	88	3.1	89	80	5	327	34	10	17	37	1.84
41459971--41460021	15	3.3	15	76	13	50	31	9	3	54	1.51
41464506--41464618	58	1.9	58	89	0	172	30	17	23	29	1.97
41472608--41472644	18	2.2	18	90	9	60	40	13	0	45	1.43
41472644--41472722	18	4.4	18	88	0	113	37	17	11	32	1.86
41472642--41472722	36	2.2	36	91	0	135	37	18	11	33	1.86
41472876--41472967	44	2.1	44	85	4	123	33	23	20	21	1.97
41473439--41473476	20	1.9	20	88	0	58	52	7	2	36	1.45
41473599--41473639	13	3.2	12	86	10	55	0	21	0	78	0.76
41473717--41473752	12	2.9	13	88	12	58	55	0	0	44	0.99
41477734--41477788	19	2.9	19	86	0	74	23	18	21	36	1.95
41483894--41484215	174	1.9	174	90	1	520	31	20	4	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41486322--41486372	16	3.2	16	77	2	59	52	5	3	37	1.44
41489906--41489947	19	2.2	19	84	16	52	52	2	2	42	1.27
41489950--41490021	31	2.2	32	83	9	85	31	6	12	48	1.67
41490475--41490516	13	2.9	14	80	13	50	47	0	0	52	1.00
41490532--41490581	18	2.6	19	77	22	52	52	2	0	46	1.12
41491553--41491587	17	2.1	18	89	10	56	2	37	0	60	1.12
41491559--41491595	16	2.3	17	86	9	51	2	29	0	67	1.04
41492580--41492826	43	5.8	43	81	5	247	29	24	14	31	1.95
41495706--41495837	65	2.0	65	97	0	246	28	19	19	32	1.96
41500840--41500887	18	2.8	17	78	6	51	4	31	0	64	1.12
41500854--41500890	18	2.0	19	89	5	58	0	27	0	72	0.84
41503663--41503700	18	2.1	18	100	0	76	36	15	5	42	1.70
41511042--41511087	25	1.9	23	86	8	65	56	2	0	41	1.11
41513027--41513068	16	2.6	16	78	14	59	54	0	0	45	0.99
41513042--41513070	11	2.5	12	88	11	51	48	0	0	51	1.00
41514103--41514211	33	3.4	31	72	22	100	46	8	29	15	1.75
41516346--41516386	21	1.9	22	85	14	59	56	0	0	43	0.99
41516349--41516393	21	2.0	23	83	8	58	60	0	0	40	0.97
41517841--41517952	28	3.9	28	65	23	70	53	0	2	42	1.21
41521932--41522003	36	2.0	36	83	5	92	27	15	27	29	1.96
41523609--41523639	3	10.3	3	92	0	53	29	0	0	70	0.87
41523607--41523637	15	2.1	15	100	0	62	25	0	0	74	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41532277--41532315	21	1.9	20	89	5	60	38	12	2	46	1.56
41533553--41533641	44	2.0	44	100	0	178	34	4	15	44	1.67
41533563--41533633	22	3.2	22	64	7	63	32	5	15	46	1.69
41536555--41536582	5	5.6	5	100	0	56	39	0	0	60	0.97
41536622--41536682	30	2.0	30	81	9	70	59	6	34	0	1.24
41538153--41538287	39	3.4	39	76	8	123	23	20	27	28	1.99
41545917--41545948	4	8.0	4	92	0	55	0	21	0	78	0.76
41545915--41545947	16	2.1	16	100	0	66	0	18	0	81	0.68
41552389--41552499	56	2.0	56	89	3	170	32	27	17	22	1.96
41553392--41553438	5	9.6	5	77	13	53	57	0	2	40	1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325