Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  169  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53360789--53360903
54
2.1
54
85
3
151
16
23
24
35
1.95
53366222--53366286
20
3.3
19
73
16
51
38
16
21
23
1.93
53368062--53368124
33
1.9
33
84
12
85
12
26
6
53
1.62
53368127--53368180
14
3.9
14
76
16
58
5
20
0
74
1.02
53368121--53368178
27
2.1
27
87
6
82
8
18
0
72
1.10
53368122--53368179
15
4.1
15
70
18
52
8
18
0
72
1.10
53368133--53368216
6
13.5
6
70
8
53
5
19
2
72
1.16
53368134--53368248
51
2.3
51
78
3
124
7
21
1
68
1.24
53370896--53370960
20
3.3
19
73
16
51
38
16
21
23
1.93
53377394--53377446
23
2.4
22
76
20
56
9
18
1
69
1.25
53391466--53391613
42
3.5
42
99
0
287
33
12
14
39
1.84
53391596--53391640
14
3.3
14
84
6
65
37
0
13
48
1.42
53393491--53393524
14
2.4
14
90
0
50
73
2
20
2
1.09
53401513--53401565
23
2.4
22
76
20
56
9
18
1
69
1.25
53408419--53408470
23
2.3
22
75
21
54
9
23
1
65
1.32
53411952--53412011
29
2.1
29
90
0
93
41
28
0
30
1.56
53411958--53412005
15
3.3
15
73
5
53
43
25
0
31
1.55
53412252--53412299
15
3.3
15
73
5
53
29
0
27
43
1.55
53412246--53412289
14
3.1
14
74
6
52
27
0
34
38
1.57
53412246--53412305
29
2.1
29
93
0
102
28
0
30
41
1.56
53413281--53413325
14
3.3
14
78
6
56
48
15
0
35
1.45
53415747--53415792
18
2.6
18
82
6
58
6
23
2
67
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53419275--53419331
27
2.1
27
100
0
114
36
29
10
22
1.88
53422821--53422905
30
2.8
30
76
0
89
29
17
24
28
1.97
53425149--53425231
30
2.7
30
81
9
89
13
21
1
63
1.35
53425182--53425237
18
3.1
18
76
5
51
7
19
3
69
1.27
53425207--53425231
12
2.1
12
100
0
50
8
16
0
76
1.02
53425300--53425362
5
12.0
5
76
18
58
3
17
1
77
0.97
53425313--53425362
6
8.2
6
81
16
50
2
18
2
78
0.95
53425302--53425362
22
2.8
20
85
9
77
3
16
1
78
0.96
53426571--53426631
10
6.1
10
74
12
54
32
13
24
29
1.93
53426572--53426632
20
3.0
20
83
9
79
32
13
26
27
1.93
53427139--53427167
11
2.7
11
94
5
51
24
6
10
58
1.55
53427768--53427811
22
2.0
22
95
0
79
25
36
4
34
1.76
53430331--53430383
24
2.2
25
86
3
72
79
3
13
3
1.01
53430338--53430391
18
2.9
18
77
20
58
75
5
11
7
1.16
53430351--53430392
19
2.2
19
91
0
66
78
2
11
7
1.04
53434720--53434784
20
3.3
19
73
16
51
38
16
21
23
1.93
53436676--53436732
18
3.3
18
82
4
73
5
14
7
73
1.21
53436708--53436736
10
2.7
11
89
10
51
0
10
6
82
0.83
53437756--53437802
14
3.6
13
75
18
53
6
12
6
74
1.20
53437757--53437810
24
2.2
24
83
9
65
5
14
5
74
1.19
53437757--53437810
25
2.2
24
83
12
65
5
14
5
74
1.19
53437826--53437855
11
2.8
11
95
5
53
16
0
6
76
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53438734--53438812
15
5.4
15
75
16
69
72
0
20
7
1.09
53438734--53438811
13
5.8
13
70
19
54
73
0
19
7
1.07
53443103--53443167
20
3.3
19
73
16
51
38
16
21
23
1.93
53444943--53445005
33
1.9
33
84
12
85
12
25
6
55
1.60
53445003--53445058
21
2.7
21
72
5
51
8
17
1
71
1.21
53445002--53445058
14
4.1
14
75
16
57
8
17
1
71
1.19
53445066--53445136
17
4.0
17
72
15
63
7
12
5
74
1.20
53445096--53445124
10
2.7
11
89
10
51
0
10
6
82
0.83
53445020--53445115
6
15.8
6
67
8
52
7
17
3
71
1.22
53446198--53446232
11
3.2
11
83
0
52
17
8
2
71
1.23
53448334--53448368
18
1.9
18
88
11
54
22
20
0
57
1.41
53450640--53450700
10
6.1
10
74
12
54
32
13
24
29
1.93
53450641--53450701
20
3.0
20
83
9
79
32
13
26
27
1.93
53451827--53451897
13
5.6
12
87
12
90
15
5
7
71
1.26
53454235--53454281
20
2.3
20
81
0
58
23
12
34
29
1.92
53455948--53456053
48
2.2
48
83
9
128
14
23
1
60
1.44
53456117--53456172
21
2.7
21
72
5
51
8
17
1
71
1.21
53456116--53456172
14
4.1
14
75
16
57
8
17
1
71
1.19
53456179--53456237
18
3.3
18
80
0
73
5
16
6
71
1.26
53456134--53456241
6
17.7
6
68
5
65
6
19
3
70
1.25
53457320--53457344
12
2.1
12
100
0
50
16
0
8
76
1.02
53457422--53457450
10
2.7
11
94
5
51
6
3
6
82
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53458836--53458891
24
2.4
23
72
3
58
23
3
32
41
1.71
53462699--53462755
30
2.0
28
86
6
78
52
3
29
14
1.58
53465991--53466050
29
2.1
29
93
0
102
41
30
0
28
1.56
53465997--53466044
15
3.3
15
73
5
53
43
27
0
29
1.55
53469441--53469495
19
3.1
17
81
7
65
34
14
9
41
1.77
53474060--53474094
9
3.8
9
92
7
61
82
8
8
0
0.83
53474059--53474095
10
3.8
10
92
7
67
83
8
8
0
0.80
53475165--53475220
30
1.9
28
85
7
76
53
3
30
12
1.55
53478739--53478788
18
2.7
18
84
3
64
16
26
0
58
1.38
53478791--53478887
42
2.3
42
89
1
142
15
23
4
56
1.56
53481302--53481336
10
3.5
10
88
0
52
40
22
22
14
1.90
53481299--53481346
20
2.4
20
71
0
51
33
18
27
20
1.96
53489047--53489099
23
2.4
22
76
20
56
9
18
1
69
1.25
53493976--53494022
20
2.3
20
81
0
58
23
12
34
29
1.92
53495328--53495382
20
2.8
20
88
0
83
25
29
16
29
1.97
53497178--53497227
13
3.8
13
97
2
91
76
6
0
18
0.99
53497278--53497315
17
2.2
17
86
9
51
84
0
10
5
0.77
53498228--53498266
15
2.4
15
87
12
51
66
2
20
10
1.33
53499577--53499639
21
3.0
21
88
2
90
30
3
33
33
1.74
53501387--53501441
20
2.8
20
88
0
83
25
29
16
29
1.97
53512023--53512061
18
2.1
19
85
4
53
7
23
2
66
1.30
53512055--53512117
18
3.5
18
72
8
65
11
28
0
60
1.31
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53512034--53512118
36
2.3
35
80
7
89
11
27
1
60
1.39
53512054--53512125
36
2.0
36
88
0
108
9
26
0
63
1.25
53512127--53512194
21
3.2
21
69
8
66
11
20
8
58
1.59
53512120--53512216
42
2.3
42
89
1
142
14
22
6
56
1.60
53513230--53513263
17
1.9
17
88
5
50
26
8
5
58
1.51
53514322--53514367
18
2.5
19
75
13
51
58
6
0
34
1.24
53514578--53514626
20
2.4
21
72
3
55
32
18
28
20
1.96
53515891--53515979
28
3.2
28
79
14
105
16
22
21
39
1.92
53516212--53516255
14
3.1
14
74
6
52
27
0
34
38
1.57
53516212--53516271
29
2.1
29
90
0
93
30
0
28
41
1.56
53519829--53519875
22
2.1
22
92
0
76
23
38
4
34
1.74
53523587--53523639
23
2.4
22
76
20
56
9
18
1
69
1.25
53534942--53534973
12
2.7
12
100
0
64
12
6
0
81
0.87
53535194--53535241
15
3.3
15
73
5
53
29
0
27
43
1.55
53535188--53535231
14
3.1
14
74
6
52
27
0
34
38
1.57
53535188--53535247
29
2.1
29
93
0
102
28
0
30
41
1.56
53538728--53538802
6
11.8
6
73
9
60
70
1
21
6
1.17
53538824--53538884
30
2.0
32
84
12
83
60
0
26
13
1.33
53540888--53540927
21
2.0
20
90
5
62
15
17
22
45
1.85
53542794--53542848
20
2.8
20
88
0
83
25
29
16
29
1.97
53547949--53547979
13
2.4
13
100
0
62
45
19
12
22
1.84
53558990--53559042
23
2.4
22
76
20
56
9
18
1
69
1.25
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53562799--53562844
10
4.5
10
81
5
56
15
23
21
39
1.92
53562796--53562844
21
2.4
20
89
3
71
14
22
22
40
1.90
53566638--53566698
30
2.0
30
83
0
77
42
6
21
29
1.78
53569492--53569531
14
2.9
14
88
0
53
50
7
32
10
1.64
53572188--53572248
29
2.1
30
87
3
88
29
0
27
42
1.56
53581058--53581112
20
2.8
20
88
0
83
25
29
16
29
1.97
53588002--53588049
25
1.9
25
83
8
62
52
16
14
16
1.76
53589685--53589736
23
2.3
22
75
21
54
9
23
1
65
1.32
53594969--53595006
19
2.0
19
85
10
51
68
0
10
21
1.19
53597841--53598065
49
4.5
49
87
2
288
28
28
17
25
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325