genome.fa.s5.2.7.7.80.10.50.1000.128.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  128  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40047743--40047808	5	12.6	5	81	12	55	75	0	3	21	0.93
40047770--40047811	18	2.3	18	79	0	57	76	0	2	21	0.90
40058473--40058511	9	4.2	9	83	6	51	71	0	2	25	0.98
40059241--40059269	15	1.9	15	100	0	58	37	0	0	62	0.96
40063083--40063284	43	4.9	41	70	9	140	32	21	17	28	1.96
40063408--40063468	25	2.4	25	81	10	63	63	4	0	31	1.15
40068452--40068483	16	2.0	16	93	0	55	25	0	3	71	1.00
40068535--40068617	7	11.6	7	88	6	78	25	7	2	65	1.31
40068550--40068616	14	4.8	14	89	5	91	25	8	0	65	1.21
40068571--40068616	21	2.2	21	100	0	92	26	13	0	60	1.32
40069257--40069299	6	7.2	6	89	0	68	51	0	48	0	1.00
40069958--40069987	15	2.0	15	93	0	51	50	26	0	23	1.50
40070144--40070267	48	2.6	46	78	8	124	20	2	29	46	1.64
40070286--40070502	41	5.3	41	94	1	355	18	25	20	35	1.95
40070286--40070542	82	3.2	80	84	9	306	19	24	19	36	1.95
40070348--40070546	41	4.9	40	90	3	125	20	23	20	36	1.95
40075165--40075297	62	2.2	58	81	6	151	42	3	3	51	1.35
40077523--40077717	25	7.8	24	67	14	101	62	3	7	26	1.38
40077523--40077763	26	9.5	25	70	12	109	61	4	6	27	1.39
40077679--40077739	27	2.3	26	84	13	81	62	6	1	29	1.30
40077799--40077855	23	2.4	23	85	2	69	61	1	5	31	1.28
40077909--40077971	27	2.4	26	78	2	72	60	1	6	31	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40078036--40078089	24	2.2	26	83	6	67	61	1	3	33	1.25
40079011--40079049	19	2.1	19	100	0	78	53	10	20	15	1.70
40079776--40079885	44	2.5	45	79	10	118	29	24	20	26	1.99
40079670--40079832	86	1.9	86	79	5	186	25	26	17	30	1.97
40079929--40080560	44	14.0	45	70	14	259	27	22	18	31	1.97
40080164--40080545	139	2.8	140	88	4	532	27	22	19	30	1.98
40080607--40081029	88	4.8	87	80	4	395	26	21	23	28	1.99
40080607--40081024	176	2.4	173	83	3	516	26	21	23	27	1.99
40081052--40081325	131	2.1	131	88	2	408	25	21	22	29	1.99
40081313--40081447	44	3.1	43	68	12	114	19	26	22	31	1.97
40081523--40081646	64	1.9	64	95	0	221	34	14	19	31	1.92
40082758--40082853	50	1.9	50	87	4	140	10	30	15	43	1.80
40087866--40088098	127	1.8	127	81	9	296	38	17	14	30	1.89
40088556--40088703	26	5.9	25	73	6	93	62	3	8	25	1.38
40088556--40088663	50	2.2	51	80	6	123	64	2	7	25	1.33
40088712--40088772	27	2.3	26	81	8	70	60	4	3	31	1.34
40088825--40088888	25	2.6	26	80	14	82	62	3	6	28	1.34
40088878--40088903	12	2.2	12	100	0	52	69	15	0	15	1.20
40088942--40089004	27	2.4	26	79	12	74	61	1	4	31	1.26
40089069--40089122	24	2.2	26	83	6	67	61	1	3	33	1.25
40090042--40090085	19	2.3	19	88	4	70	54	13	15	15	1.71
40096778--40096817	19	2.1	19	86	9	55	55	2	5	37	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40100917--40100953	18	2.0	19	94	5	67	32	32	8	27	1.86
40101066--40101100	17	2.1	16	89	10	52	65	0	2	31	1.07
40111306--40111367	21	3.0	21	82	0	79	51	14	17	16	1.76
40113608--40113767	49	3.3	48	79	11	148	24	29	19	26	1.98
40113608--40113775	50	3.4	50	79	7	159	25	29	19	26	1.99
40116934--40116975	21	2.0	22	85	4	59	71	4	2	21	1.16
40124630--40125182	49	11.6	48	71	15	242	24	29	18	27	1.98
40124620--40125182	48	11.8	48	72	13	314	24	29	19	27	1.98
40124623--40125185	146	3.9	145	81	7	584	24	29	19	26	1.98
40133230--40133260	16	1.9	16	93	0	53	35	22	0	41	1.54
40133227--40133266	20	2.0	20	85	0	53	37	22	0	40	1.54
40133521--40133707	55	3.5	53	74	12	139	24	25	16	34	1.95
40137831--40138491	331	2.0	332	98	0	1288	35	20	4	39	1.72
40138730--40138799	31	2.2	33	82	17	85	42	0	4	52	1.20
40138862--40139052	97	2.0	98	98	1	375	25	15	7	51	1.68
40143502--40143656	47	3.3	47	75	11	149	23	29	18	28	1.98
40144335--40144391	29	2.0	28	83	12	73	33	5	26	35	1.79
40151551--40151607	29	2.0	28	83	12	73	33	5	26	35	1.79
40153729--40153786	30	1.9	30	89	0	89	31	25	10	32	1.89
40154107--40154131	12	2.1	12	100	0	50	60	16	8	16	1.58
40164864--40165075	43	5.0	42	76	8	160	33	25	15	26	1.95
40170789--40170833	21	2.1	21	87	0	63	53	13	2	31	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40175591--40175617	2	13.5	2	100	0	54	0	0	48	51	1.00
40176330--40176354	2	12.5	2	100	0	50	52	48	0	0	1.00
40182664--40182848	91	2.0	91	96	1	345	41	10	11	36	1.75
40188113--40188268	78	2.0	78	88	0	231	29	7	7	55	1.54
40189669--40189704	16	2.2	16	90	9	56	30	0	16	52	1.44
40191536--40191736	41	4.9	41	88	0	294	32	24	22	19	1.97
40191939--40191977	14	2.8	14	88	0	51	12	0	46	41	1.42
40193124--40193166	22	2.0	22	100	0	86	27	18	20	32	1.96
40199788--40199881	43	2.2	43	92	0	152	20	18	32	28	1.96
40206115--40206168	28	2.0	27	85	3	72	66	3	1	27	1.19
40209873--40209921	24	2.0	24	96	0	89	40	4	2	53	1.32
40210502--40210818	41	7.7	41	88	1	411	21	23	23	31	1.98
40216830--40216869	22	1.9	22	85	10	57	40	5	17	37	1.72
40221005--40221038	11	3.0	12	87	12	54	35	8	14	41	1.77
40230263--40230319	25	2.3	25	100	0	114	40	3	7	49	1.47
40231013--40231078	3	22.0	3	76	11	55	59	0	40	0	0.98
40231016--40231078	15	4.4	15	82	13	71	58	0	41	0	0.98
40230984--40231077	21	4.4	21	71	10	66	54	0	42	3	1.16
40231077--40231129	3	17.7	3	100	0	106	33	0	33	32	1.58
40233052--40233085	3	11.7	3	93	6	61	70	0	29	0	0.87
40240998--40241027	15	2.0	15	93	0	51	30	13	26	30	1.94
40243289--40243325	17	2.1	18	90	5	58	35	5	2	56	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40243906--40243993	42	2.1	43	82	2	106	32	25	21	20	1.97
40246941--40247018	33	2.4	33	76	8	86	30	16	24	28	1.97
40248848--40248893	17	2.6	17	86	3	56	67	8	0	23	1.18
40253006--40253030	10	2.5	10	100	0	50	40	0	8	52	1.31
40259122--40259488	46	7.6	49	86	8	449	34	14	22	29	1.93
40259122--40259488	98	3.7	97	85	9	510	34	14	22	29	1.93
40259136--40259488	196	1.8	196	93	0	616	34	14	22	28	1.93
40259452--40259597	37	4.0	37	92	1	233	36	16	21	25	1.94
40259122--40259477	150	2.4	149	89	4	476	34	14	21	29	1.93
40260853--40260996	49	2.9	49	92	1	225	23	14	29	31	1.94
40264123--40264489	46	7.6	49	86	8	449	34	14	22	29	1.93
40264123--40264489	98	3.7	97	85	9	510	34	14	22	29	1.93
40264137--40264489	196	1.8	196	93	0	616	34	14	22	28	1.93
40264453--40264598	37	4.0	37	92	1	233	36	16	21	25	1.94
40264123--40264478	150	2.4	149	90	4	485	34	14	21	29	1.93
40273753--40274611	76	10.9	76	77	12	783	28	16	21	32	1.95
40273757--40274788	88	12.8	76	77	13	692	29	16	20	33	1.95
40273753--40274852	165	6.8	155	77	13	861	29	16	20	33	1.95
40274461--40274851	88	4.4	88	84	5	529	29	16	19	34	1.93
40273755--40275155	476	2.9	474	81	11	1407	28	16	20	34	1.94
40274461--40275155	176	4.0	174	76	12	689	27	16	19	36	1.93
40274438--40275155	265	2.8	262	80	8	790	27	16	19	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40274904--40275049	73	2.0	73	87	0	211	25	18	26	30	1.98
40275029--40275059	14	2.2	14	94	0	53	16	9	6	67	1.39
40277239--40277263	10	2.5	10	100	0	50	40	0	8	52	1.31
40279822--40279873	26	2.0	26	96	0	95	28	11	17	42	1.84
40287298--40287338	18	2.2	20	91	8	68	56	4	2	36	1.34
40287584--40287628	19	2.2	20	84	7	56	44	0	6	48	1.29
40288684--40288750	31	2.2	31	94	0	116	46	2	8	41	1.50
40289316--40289357	22	2.0	22	85	4	59	59	14	11	14	1.61
40290295--40290331	3	12.3	3	88	0	56	35	2	0	62	1.10
40291332--40291371	13	3.1	13	96	0	71	17	32	35	15	1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325