genome.fa.s5.2.7.7.80.10.50.1000.113.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  113  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35796834--35796926	3	30.7	3	84	6	125	35	3	0	61	1.12
35796942--35796966	6	4.2	6	100	0	50	32	0	16	52	1.44
35797049--35797084	3	11.7	3	94	5	63	36	0	0	63	0.94
35797203--35797266	29	2.2	29	78	10	69	35	1	4	57	1.29
35797214--35797275	23	2.6	25	85	12	78	37	0	6	56	1.25
35796895--35797639	280	2.6	283	83	8	891	30	3	5	60	1.38
35797050--35797617	142	4.1	139	82	10	665	30	3	5	59	1.37
35797052--35797639	139	4.2	138	83	9	692	30	4	5	59	1.38
35799091--35799139	22	2.2	22	82	7	64	67	0	2	30	1.02
35805236--35805278	18	2.2	20	84	8	54	44	9	0	46	1.35
35819941--35819970	6	4.8	6	95	4	51	33	0	33	33	1.58
35827499--35827557	29	2.0	29	90	0	91	49	5	3	42	1.41
35831038--35831087	24	2.1	24	88	0	73	50	10	4	36	1.55
35832130--35832175	20	2.4	19	82	7	56	54	2	10	32	1.47
35833898--35833980	26	3.2	26	65	13	62	36	21	1	40	1.61
35833950--35834013	32	2.0	32	90	6	103	32	21	3	42	1.69
35833889--35833992	53	2.0	53	94	3	183	35	21	0	42	1.59
35846383--35846418	18	1.9	19	88	5	56	52	11	0	36	1.37
35848602--35848641	19	2.0	20	85	4	55	57	0	5	37	1.21
35848729--35848769	17	2.4	17	79	0	55	65	0	2	31	1.05
35858515--35858565	26	2.0	26	92	0	84	35	17	15	31	1.92
35861691--35861774	27	3.2	26	79	5	96	32	15	16	35	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35865431--35865510	43	1.9	43	82	5	101	57	5	6	31	1.45
35867396--35867593	44	4.5	44	77	8	161	29	23	18	27	1.98
35867394--35867778	44	8.6	44	70	10	127	28	21	19	30	1.98
35867706--35868349	132	4.9	132	85	3	850	27	24	20	27	1.99
35867658--35868349	263	2.6	264	86	3	925	27	23	20	28	1.99
35875105--35875139	17	2.0	18	88	5	54	45	40	2	11	1.55
35876393--35876520	3	43.7	3	68	10	59	30	7	2	60	1.36
35876476--35876527	23	2.3	23	87	9	72	28	3	5	61	1.37
35878033--35878112	43	1.9	43	82	5	101	57	5	6	31	1.45
35886145--35886186	20	2.0	22	90	9	70	69	4	0	26	1.08
35893552--35893625	38	1.9	38	94	0	130	37	13	10	37	1.80
35898321--35898392	21	3.3	21	79	14	67	50	2	11	36	1.53
35899906--35899994	41	2.2	41	82	8	110	11	3	46	39	1.56
35902391--35902424	17	2.0	17	88	0	50	38	5	8	47	1.59
35909127--35909232	53	2.0	53	98	0	203	41	15	10	33	1.81
35909132--35909214	26	3.2	26	62	21	64	43	15	7	33	1.74
35909858--35909921	21	3.0	21	75	4	67	43	15	23	17	1.87
35909829--35909921	42	2.2	42	82	3	107	44	17	22	16	1.87
35910008--35910055	24	2.0	24	91	0	78	18	27	10	43	1.82
35910115--35910207	45	2.1	45	89	4	143	44	16	1	38	1.55
35916462--35916659	27	7.3	27	87	2	272	29	24	7	37	1.83
35916462--35916657	81	2.4	80	93	1	320	30	25	7	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35916691--35916841	27	5.6	27	80	6	164	42	21	6	29	1.78
35916672--35916841	54	3.2	52	80	6	180	42	21	7	28	1.80
35916691--35916840	81	1.9	81	83	8	198	42	21	6	29	1.78
35916691--35916898	54	3.8	54	80	5	188	42	20	6	30	1.78
35916691--35916904	27	7.9	27	78	10	121	41	19	7	31	1.79
35916945--35917018	27	2.7	27	76	12	71	37	20	20	21	1.94
35916958--35917022	27	2.4	27	82	5	78	35	18	24	21	1.96
35917831--35917900	25	2.8	25	86	0	95	27	25	21	25	1.99
35918120--35918233	31	3.7	31	95	2	196	28	16	26	28	1.97
35926940--35926969	14	2.1	14	93	0	51	70	0	0	30	0.88
35927321--35927359	12	3.2	12	85	0	51	35	10	46	7	1.67
35930584--35930693	55	2.0	55	96	0	202	24	15	17	42	1.88
35930634--35931029	125	3.2	125	80	3	456	23	15	15	45	1.84
35933030--35933225	69	2.8	69	91	1	295	34	10	36	18	1.85
35933668--35933719	26	2.0	26	96	0	95	32	15	15	36	1.89
35935930--35935970	18	2.2	18	86	4	55	51	12	7	29	1.66
35937476--35937519	18	2.4	18	100	0	88	9	0	36	54	1.32
35941624--35941652	14	2.0	15	93	6	51	31	0	0	68	0.89
35942791--35942842	25	2.0	25	96	3	95	30	0	7	61	1.24
35958793--35958881	22	4.1	22	75	15	60	30	3	4	61	1.32
35958821--35958863	16	2.8	16	89	3	70	30	0	2	67	1.03
35958833--35958878	16	2.7	16	86	10	56	28	2	6	63	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35959410--35959482	27	2.7	26	83	12	87	34	6	5	53	1.51
35959613--35959656	21	2.1	21	95	4	81	34	4	4	56	1.40
35959577--35959677	46	2.2	46	82	10	118	32	2	4	59	1.34
35966551--35967042	242	2.0	244	91	0	799	26	24	11	37	1.90
35970595--35970666	28	2.6	28	76	10	76	29	1	22	47	1.60
35970764--35970816	22	2.4	22	87	0	79	39	3	18	37	1.69
35970717--35970880	86	1.9	86	88	0	247	37	2	17	42	1.62
35970795--35970870	34	2.2	34	88	4	109	42	2	15	39	1.61
35970787--35970907	64	2.0	58	87	9	170	38	1	19	41	1.61
35970786--35970910	28	4.1	29	78	12	135	37	1	19	41	1.61
35970965--35971215	126	2.0	124	87	3	360	38	17	15	28	1.90
35974716--35974758	18	2.4	18	96	0	77	41	6	27	23	1.80
35976324--35976372	21	2.3	21	82	0	53	40	4	24	30	1.74
35978416--35978558	69	2.1	69	89	0	214	36	10	36	16	1.83
35983120--35983171	16	3.4	16	82	17	74	51	1	0	46	1.12
35983104--35983178	29	2.7	27	76	13	71	48	1	0	50	1.09
35983186--35983216	16	1.9	16	100	0	62	61	0	0	38	0.96
35983255--35983311	15	3.5	15	73	17	60	50	1	0	47	1.11
35983545--35983621	39	2.0	39	84	0	100	28	7	22	41	1.81
36003122--36003230	42	2.6	42	85	4	130	25	17	23	33	1.96
36005114--36005212	43	2.3	43	80	3	110	27	13	25	34	1.93
36009689--36009732	18	2.4	18	92	0	70	22	18	47	11	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36015064--36015117	23	2.4	21	85	11	65	44	9	9	37	1.69
36015062--36015117	25	2.5	22	85	11	69	44	8	8	37	1.67
36017373--36017454	39	2.1	39	97	0	155	47	12	10	29	1.75
36017838--36017919	38	2.2	38	84	0	101	41	23	19	15	1.90
36021569--36021633	34	1.9	33	82	14	80	20	26	21	32	1.97
36025016--36025062	21	2.2	21	82	14	53	23	2	2	72	1.06
36025007--36025078	28	2.5	28	82	11	74	19	2	4	73	1.12
36032289--36032373	34	2.5	34	82	0	107	23	12	29	34	1.92
36033685--36033725	21	2.0	21	85	0	55	41	7	7	43	1.60
36035479--36035552	31	2.4	31	88	0	112	17	2	41	37	1.64
36039279--36039334	28	2.0	28	82	0	67	32	8	0	58	1.29
36039385--36039449	14	4.6	14	74	11	53	33	3	0	63	1.10
36040447--36040568	45	2.7	45	92	2	201	27	28	22	20	1.99
36040561--36040769	38	5.5	38	90	0	301	32	25	21	20	1.97
36041066--36041200	43	3.1	44	83	6	184	28	29	17	24	1.97
36044341--36044381	18	2.3	18	91	0	64	34	9	0	56	1.32
36044347--36044390	18	2.6	17	85	7	54	36	9	0	54	1.32
36044489--36044549	21	2.8	22	79	16	65	29	4	0	65	1.13
36047383--36047485	37	2.8	37	77	5	118	36	7	17	37	1.79
36047386--36047503	37	3.2	37	76	2	112	39	6	17	35	1.77
36050586--36050632	22	2.2	21	84	3	58	36	21	8	34	1.84
36050603--36050645	19	2.2	19	87	8	59	32	18	11	37	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36050980--36051015	16	2.2	16	95	0	63	52	5	2	38	1.39
36062621--36062960	27	12.5	26	85	5	367	36	17	20	25	1.94
36062615--36062960	82	4.2	81	87	2	478	36	17	19	25	1.94
36062618--36062973	54	6.6	54	85	3	421	37	17	20	24	1.94
36063199--36063383	67	2.7	67	89	0	280	21	26	20	31	1.98
36063559--36063637	31	2.5	31	91	0	122	20	18	12	48	1.81
36063559--36063646	6	14.3	6	72	17	65	20	18	13	47	1.82
36067109--36067143	18	1.9	18	88	0	52	57	11	0	31	1.34
36067860--36067931	36	2.1	35	87	10	105	26	16	5	51	1.66
36068339--36068386	23	2.1	23	100	0	96	35	0	20	43	1.52

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325