Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  196  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61571128--61571572
27
16.7
26
78
10
277
38
19
9
31
1.85
61571128--61571569
80
5.5
80
79
6
412
39
19
9
31
1.84
61571551--61571612
27
2.3
27
94
0
106
38
12
12
35
1.82
61571149--61571594
107
4.2
107
82
5
503
39
18
9
32
1.84
61574788--61575344
27
20.7
27
85
4
605
37
19
10
31
1.86
61576500--61576539
15
2.7
15
84
0
53
7
22
7
62
1.47
61576651--61576696
18
2.5
18
80
13
58
8
23
0
67
1.18
61577934--61577981
10
4.7
10
84
5
60
18
4
4
72
1.17
61577920--61577981
21
2.8
21
82
7
70
19
4
6
69
1.29
61582189--61582269
32
2.5
32
80
9
92
62
3
0
33
1.12
61582980--61583022
22
1.9
23
95
4
79
32
6
0
60
1.23
61582971--61583157
10
18.9
10
66
21
58
34
2
1
60
1.20
61583047--61583217
9
17.4
11
63
25
62
39
1
0
58
1.08
61583072--61583207
29
4.6
29
79
6
130
41
1
0
57
1.08
61583067--61583100
8
4.0
8
85
14
50
35
0
0
64
0.94
61583047--61583146
47
2.1
47
85
5
130
40
1
0
59
1.04
61583087--61583210
19
6.3
21
70
15
81
41
1
0
56
1.09
61583095--61583219
20
6.3
19
69
16
76
41
1
0
56
1.09
61583169--61583219
22
2.5
20
83
6
66
39
1
0
58
1.09
61590388--61590429
21
2.0
21
81
9
50
50
38
9
2
1.48
61591201--61591252
15
3.3
15
71
10
50
46
9
3
40
1.55
61596367--61596499
51
2.6
51
80
0
167
42
11
6
39
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61597352--61597425
36
2.1
36
94
0
130
37
5
12
44
1.65
61597547--61597609
31
2.0
31
90
0
99
22
12
4
60
1.51
61599779--61599889
55
2.0
55
100
0
222
36
22
5
36
1.77
61599783--61599868
26
3.2
26
64
20
68
34
18
5
40
1.75
61605813--61605852
21
1.9
21
94
0
71
20
32
37
10
1.85
61606979--61607102
47
2.7
47
85
8
148
25
27
18
29
1.98
61609841--61610045
39
5.2
39
86
1
212
30
27
21
19
1.98
61609836--61610045
78
2.7
80
80
4
246
30
28
21
19
1.97
61612573--61612605
3
11.0
3
100
0
66
33
0
0
66
0.92
61616020--61616063
17
2.6
17
85
0
61
50
13
9
27
1.72
61617066--61617110
23
2.0
23
86
0
63
46
4
0
48
1.22
61617388--61617437
21
2.4
22
80
10
59
64
2
2
32
1.16
61617558--61617614
30
1.9
30
82
10
73
50
1
3
43
1.29
61640084--61640131
19
2.6
19
80
9
55
35
2
14
47
1.56
61644768--61644815
19
2.6
19
80
9
55
35
2
14
47
1.56
61646790--61646854
29
2.2
29
75
0
67
46
7
1
44
1.41
61647136--61647186
19
2.5
19
81
15
50
13
7
1
76
1.09
61647205--61647256
27
2.0
25
81
7
59
38
0
5
55
1.24
61647236--61647284
22
2.2
23
88
3
73
38
0
0
61
0.96
61647243--61647291
22
2.2
22
77
0
53
48
2
0
48
1.12
61649176--61649808
322
2.0
323
92
1
1074
43
9
14
32
1.78
61651056--61651299
125
2.0
125
89
1
373
21
29
13
35
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61659936--61660039
52
2.0
52
88
0
154
30
26
19
23
1.98
61664201--61664258
29
2.0
29
96
0
107
44
12
8
34
1.72
61664413--61664496
43
2.0
43
85
4
116
23
14
26
35
1.93
61664428--61664527
43
2.3
43
78
13
107
25
16
24
35
1.95
61671543--61671667
62
2.0
62
96
0
232
29
17
6
46
1.73
61671602--61671645
19
2.2
21
84
8
56
29
13
2
54
1.51
61674496--61674533
8
4.9
8
90
3
60
2
34
0
63
1.09
61677994--61678143
41
3.7
41
80
1
194
28
27
22
22
1.99
61682915--61683136
39
5.6
39
84
6
238
24
27
22
24
2.00
61682915--61683137
79
2.8
77
82
8
252
24
27
22
24
2.00
61692176--61692264
37
2.2
40
75
13
94
22
20
30
26
1.98
61692193--61692267
38
2.0
38
84
7
100
24
21
28
26
1.99
61699298--61699332
1
35.0
1
100
0
70
0
0
100
0
0.00
61701573--61701674
42
2.3
45
81
10
120
26
12
26
34
1.92
61703610--61703645
19
1.9
18
94
5
63
63
8
0
27
1.23
61705383--61705427
22
2.0
22
87
12
65
17
0
33
48
1.48
61705635--61706295
177
3.7
176
83
5
825
27
25
17
29
1.97
61706059--61706145
43
2.0
45
82
8
108
25
26
14
33
1.95
61705635--61706295
353
1.9
353
84
5
906
27
25
17
29
1.97
61706451--61706642
64
3.0
64
96
0
348
39
12
16
31
1.86
61712514--61712549
19
1.9
18
94
5
63
63
8
0
27
1.23
61715062--61715217
40
3.9
40
88
3
224
24
27
22
25
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61715036--61715213
80
2.2
80
85
4
227
24
28
23
24
2.00
61717194--61717228
16
2.1
16
89
5
52
14
11
34
40
1.82
61722844--61722900
17
3.4
17
73
9
62
33
29
3
33
1.75
61722837--61722910
34
2.2
34
92
0
130
37
29
2
29
1.71
61727448--61727533
27
3.1
27
65
28
72
22
4
31
41
1.74
61727445--61727557
56
2.0
56
98
0
217
21
5
32
40
1.75
61733182--61733224
20
2.2
19
84
16
52
30
0
0
69
0.88
61733200--61733241
18
2.3
19
79
4
50
30
0
0
69
0.89
61733643--61733674
15
2.1
15
94
0
55
31
3
0
65
1.08
61743925--61744212
47
6.1
47
93
1
477
31
8
30
28
1.87
61743925--61744212
96
3.0
94
92
2
477
31
8
30
28
1.87
61743925--61744212
143
2.0
141
93
1
486
31
8
30
28
1.87
61747513--61747662
41
3.7
41
80
1
194
21
22
27
29
1.99
61754123--61754288
38
4.3
38
91
1
233
24
21
29
24
1.99
61754123--61754288
77
2.2
77
87
2
235
24
21
29
24
1.99
61754123--61754321
77
2.6
75
84
5
229
26
20
28
24
1.99
61762294--61762478
40
4.6
39
82
5
194
24
22
28
24
2.00
61762294--61762478
79
2.3
80
82
7
216
24
22
28
24
2.00
61762347--61762511
79
2.1
79
80
6
183
26
20
27
25
1.99
61780620--61780657
19
2.0
19
85
10
51
68
0
10
21
1.19
61787199--61787423
119
1.9
120
83
6
296
26
27
21
24
1.99
61787199--61787423
40
5.7
40
85
6
287
26
27
21
24
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61796574--61796656
40
2.1
40
83
0
103
37
24
13
25
1.91
61797434--61797495
23
2.5
26
84
12
85
41
16
0
41
1.48
61797428--61797483
23
2.4
23
96
0
103
44
14
0
41
1.45
61801095--61801310
38
5.6
39
79
9
194
26
21
28
24
1.99
61801148--61801309
78
2.1
73
82
8
182
26
21
29
22
1.99
61808991--61809213
40
5.6
39
80
7
216
25
21
27
25
1.99
61809071--61809247
79
2.2
80
81
4
191
25
21
28
24
1.99
61812329--61812430
39
2.6
39
93
0
168
24
22
27
25
2.00
61824036--61824157
50
2.5
49
82
5
142
26
22
15
35
1.94
61832491--61832612
46
2.6
46
80
5
127
26
24
13
35
1.93
61835909--61836059
43
3.5
43
78
6
171
31
24
15
28
1.95
61842956--61843012
28
2.0
29
89
3
89
24
14
33
28
1.94
61850678--61850897
117
1.9
119
83
7
288
24
28
21
25
1.99
61850659--61850900
40
6.1
40
83
7
282
24
27
22
25
2.00
61858647--61858868
40
5.7
40
84
7
260
24
27
22
24
2.00
61858653--61858868
116
1.8
118
82
7
280
24
28
22
25
2.00
61872773--61872845
34
2.1
34
82
0
83
26
23
27
23
2.00
61873441--61873535
33
2.9
32
75
9
84
23
26
12
37
1.90
61875031--61875134
20
5.2
20
64
13
61
17
29
14
38
1.89
61875030--61875154
40
3.1
40
82
2
135
18
31
13
36
1.90
61882298--61882437
70
2.0
70
98
0
271
42
12
30
15
1.82
61886627--61886700
29
2.6
29
86
4
96
27
16
31
25
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
61894774--61894847
29
2.6
29
86
4
96
27
16
31
25
1.96
61896775--61896802
10
2.8
10
100
0
56
10
10
7
71
1.31
61899746--61900161
47
8.7
47
93
4
710
30
29
7
32
1.86
61899746--61900161
96
4.4
96
95
2
750
30
29
7
32
1.86
61902396--61902714
47
6.7
47
93
1
539
29
28
8
33
1.86
61902396--61902714
143
2.2
141
93
1
548
29
28
8
33
1.86
61905958--61906177
47
4.7
47
79
9
209
20
27
22
29
1.99
61905958--61906174
94
2.3
95
86
5
289
21
27
21
29
1.98
61907394--61907447
21
2.5
23
76
11
69
12
20
24
42
1.87
61908325--61908393
22
3.1
21
75
8
66
20
21
17
40
1.91

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325