genome.fa.s5.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  119  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37176585--37176703	40	3.0	40	94	0	202	33	31	18	16	1.94
37185195--37185323	35	3.5	36	81	12	138	33	10	23	32	1.89
37186477--37186534	30	1.9	30	89	0	89	22	37	18	20	1.94
37187495--37187571	40	1.9	40	91	0	127	35	32	16	15	1.91
37187498--37187583	40	2.2	39	81	8	93	38	30	15	16	1.89
37195198--37195266	29	2.4	29	95	0	120	34	11	28	24	1.91
37198293--37198320	11	2.5	11	100	0	56	14	25	0	60	1.34
37206901--37206961	31	2.0	31	100	0	122	36	13	19	31	1.90
37208392--37208506	43	2.7	43	78	8	117	36	20	16	26	1.93
37210486--37210524	12	3.2	12	85	0	51	12	17	41	28	1.87
37218107--37218132	13	2.0	13	100	0	52	30	0	15	53	1.42
37219889--37219947	30	2.0	30	100	0	118	28	20	23	27	1.99
37220154--37220179	5	5.2	5	100	0	52	42	57	0	0	0.98
37220170--37220194	13	1.9	13	100	0	50	32	48	0	20	1.50
37220221--37220270	6	8.0	6	86	8	73	78	4	0	18	0.91
37220290--37220348	9	6.6	9	78	7	57	28	8	16	45	1.77
37222100--37222126	4	6.8	4	100	0	54	51	22	0	25	1.48
37222931--37223059	61	2.1	61	82	2	152	25	31	20	21	1.98
37223886--37223911	13	2.0	13	100	0	52	30	0	15	53	1.42
37224780--37224824	22	2.0	23	82	4	56	24	8	44	22	1.81
37227715--37227813	40	2.5	39	77	6	110	17	11	33	38	1.85
37229666--37229723	20	3.0	19	90	5	64	31	18	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37229681--37229723	20	2.2	20	100	0	86	30	18	16	34	1.93
37229739--37229795	13	4.1	14	74	24	50	54	3	0	42	1.17
37231423--37231471	20	2.5	19	80	6	53	65	6	6	22	1.38
37234748--37234782	18	1.9	18	88	0	52	25	0	0	74	0.82
37234743--37234785	23	1.9	22	85	4	59	23	0	0	76	0.78
37249168--37249811	44	14.9	43	70	13	317	30	18	21	28	1.97
37249260--37249635	85	4.4	85	69	13	266	30	18	21	29	1.97
37249207--37249754	129	4.3	129	97	0	999	29	18	21	29	1.97
37253227--37253266	21	1.9	21	94	0	71	27	7	5	60	1.45
37258566--37258622	30	1.9	29	82	10	71	42	15	5	36	1.70
37259493--37259581	43	2.1	43	100	0	178	34	21	8	34	1.85
37261750--37261810	32	2.0	31	81	12	74	36	6	4	52	1.49
37267856--37267899	22	1.9	24	90	9	74	0	13	15	70	1.17
37272263--37272312	20	2.5	19	87	9	73	42	8	0	50	1.32
37272284--37272320	15	2.4	16	86	13	60	37	10	0	51	1.37
37273061--37273105	15	2.9	15	81	15	56	46	0	11	42	1.39
37273077--37273131	20	2.8	19	84	10	74	49	0	9	41	1.34
37277145--37277290	71	2.1	71	92	0	238	30	15	23	30	1.95
37279463--37279525	21	3.1	20	73	15	58	61	14	14	9	1.55
37279941--37279997	24	2.4	24	93	0	96	42	0	3	54	1.17
37281403--37281446	23	1.9	23	85	0	61	56	9	6	27	1.55
37285478--37285530	16	3.3	16	79	10	63	18	28	0	52	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37287177--37287213	17	2.2	17	90	9	58	18	29	32	18	1.96
37289373--37289414	17	2.3	19	84	15	54	40	2	0	57	1.12
37293000--37293077	39	2.0	39	97	0	147	33	29	7	29	1.85
37296691--37296730	20	2.0	20	85	0	53	22	7	2	67	1.28
37300403--37300445	20	2.0	20	82	8	50	41	16	2	39	1.61
37301498--37301535	18	2.1	18	90	0	58	31	2	0	65	1.06
37306902--37306937	13	2.8	13	88	12	56	50	0	0	50	1.00
37306916--37306954	19	2.0	20	90	5	62	58	0	0	41	0.98
37306916--37306953	20	1.9	20	88	0	58	60	0	0	39	0.97
37306893--37306974	31	2.6	33	86	5	107	50	0	0	50	1.00
37307442--37307475	12	2.9	12	86	4	52	32	0	0	67	0.91
37307597--37307654	30	1.9	30	89	0	89	56	12	6	24	1.59
37315795--37315853	29	2.0	29	96	0	109	30	10	15	44	1.79
37321364--37321434	38	1.9	36	86	11	99	33	14	4	47	1.63
37327082--37327128	15	3.1	16	79	11	55	59	10	2	27	1.42
37328765--37328856	29	3.1	31	83	9	111	33	3	4	58	1.34
37328767--37328832	27	2.4	27	82	9	82	31	1	6	60	1.30
37328765--37328835	11	7.1	11	75	18	57	33	1	5	59	1.30
37328820--37328870	23	2.3	22	83	6	66	37	3	1	56	1.29
37329267--37329291	13	1.9	13	100	0	50	24	8	0	68	1.16
37333168--37333244	9	8.7	9	92	1	120	22	25	11	40	1.88
37341275--37341662	43	8.9	43	72	12	220	36	21	20	21	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37341336--37341707	87	4.3	86	83	4	469	36	20	22	20	1.96
37341468--37341700	44	5.3	45	70	9	187	36	21	23	19	1.95
37343437--37343527	30	3.0	30	77	6	87	30	3	5	60	1.35
37343490--37343539	23	2.2	22	82	6	64	38	4	2	56	1.30
37343936--37343960	13	1.9	13	100	0	50	24	8	0	68	1.16
37345033--37345065	3	11.0	3	100	0	66	66	0	0	33	0.92
37346058--37346089	10	3.2	10	95	0	55	6	0	12	81	0.87
37351387--37351411	13	1.9	13	100	0	50	32	12	0	56	1.36
37351862--37351921	23	2.7	23	69	20	56	65	0	5	30	1.14
37359896--37360077	43	4.3	42	79	8	165	30	28	16	24	1.96
37360435--37360568	66	2.0	65	81	5	153	12	26	18	41	1.87
37362340--37362386	5	9.2	5	95	4	85	38	0	0	61	0.96
37362342--37362384	21	2.0	21	100	0	86	37	0	0	62	0.95
37366274--37366591	46	7.0	46	90	1	444	23	23	14	38	1.91
37368542--37368587	14	3.4	14	82	11	51	6	28	0	65	1.17
37370306--37370368	30	2.1	30	91	5	101	58	11	4	25	1.51
37373652--37373734	5	16.6	5	100	0	166	39	0	0	60	0.97
37374366--37374390	12	2.1	12	100	0	50	16	24	20	40	1.91
37374368--37374474	45	2.4	45	80	3	126	22	16	17	42	1.88
37388473--37388510	19	2.0	20	85	15	53	42	5	7	44	1.56
37391957--37392006	22	2.3	22	96	0	91	42	10	10	38	1.72
37394599--37394628	15	2.0	15	100	0	60	13	6	13	66	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37394602--37394636	15	2.3	15	90	5	52	14	5	17	62	1.49
37394803--37394979	52	3.5	51	82	4	191	27	27	14	30	1.95
37399210--37399367	27	5.9	27	83	11	191	34	22	24	18	1.96
37399228--37399367	54	2.6	54	94	2	246	35	24	23	17	1.95
37400941--37401048	26	4.2	26	95	0	198	36	25	6	31	1.82
37408438--37408502	34	2.0	34	81	6	80	32	26	15	26	1.95
37408810--37408862	26	2.0	26	82	7	63	26	13	20	39	1.89
37410313--37410387	26	2.9	26	93	0	123	38	26	2	32	1.70
37411168--37411213	23	2.0	23	84	12	60	32	2	4	60	1.28
37411174--37411230	28	2.1	28	90	3	89	36	0	5	57	1.21
37411370--37411412	21	2.0	21	81	0	50	37	11	6	44	1.68
37419709--37419753	11	3.9	11	80	11	54	35	0	2	62	1.08
37421892--37421967	38	2.0	38	100	0	152	31	18	26	23	1.97
37421930--37422146	46	4.7	46	86	1	265	40	14	23	22	1.90
37421882--37422134	138	1.9	130	84	8	337	39	13	23	22	1.90
37428325--37428358	14	2.4	14	90	0	50	20	17	2	58	1.51
37428158--37428482	89	3.6	88	83	6	361	29	15	17	37	1.91
37428359--37428795	162	2.8	148	83	7	493	27	15	19	37	1.92
37428445--37428592	75	2.0	75	82	2	181	27	17	20	33	1.96
37428733--37428761	14	2.0	15	93	6	51	20	13	6	58	1.58
37428671--37428921	89	2.8	87	80	6	281	26	17	19	37	1.93
37431488--37431530	21	2.0	21	81	0	50	37	11	6	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37431571--37431626	21	2.8	21	75	21	57	25	5	5	64	1.36
37437292--37437394	46	2.3	45	78	6	118	33	20	22	24	1.97
37437316--37437402	23	3.8	23	84	3	95	36	19	21	21	1.95
37437306--37437392	46	1.9	45	85	2	120	36	19	22	20	1.95
37440330--37440383	27	2.0	26	82	10	65	53	5	16	24	1.64
37440352--37440463	59	1.9	59	85	3	154	54	7	10	27	1.61
37445247--37445312	33	2.0	34	82	8	82	31	25	15	27	1.95
37445629--37445681	26	2.0	27	85	7	74	24	15	22	37	1.92
37447168--37447223	26	2.2	26	100	0	112	35	26	7	30	1.83
37450093--37450159	35	1.9	35	81	6	82	22	31	20	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325