Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  150  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47723815--47724327
25
19.9
26
66
23
87
31
7
1
59
1.35
47723895--47724026
2
69.0
2
68
14
64
37
7
1
53
1.39
47723895--47724022
12
9.8
13
73
22
85
36
7
1
53
1.39
47723907--47723991
27
3.3
27
76
21
92
35
9
1
54
1.41
47724058--47724327
6
44.3
6
66
19
80
31
4
1
62
1.25
47724056--47724129
27
2.9
26
76
13
82
25
2
1
70
1.09
47724091--47724144
20
2.6
21
80
19
60
24
3
0
72
1.01
47724058--47724175
47
2.5
48
78
14
131
27
3
0
68
1.11
47724142--47724322
60
3.2
58
75
18
148
33
6
1
58
1.32
47724251--47724327
2
40.0
2
74
7
70
38
1
1
58
1.15
47724205--47724322
51
2.5
46
76
18
111
34
4
2
58
1.31
47724446--47724482
14
2.6
15
83
12
51
27
2
0
70
1.01
47724595--47724700
7
15.0
7
73
20
60
35
4
1
57
1.31
47724589--47724701
11
9.9
12
69
22
57
36
4
1
57
1.29
47724724--47724762
16
2.4
17
86
4
53
30
7
2
58
1.39
47724854--47724904
16
3.2
16
75
5
50
39
3
0
56
1.18
47725069--47725122
18
3.2
17
80
12
58
35
0
5
59
1.21
47725094--47725118
13
1.9
13
100
0
50
40
0
0
60
0.97
47725080--47725121
22
1.9
22
85
0
57
38
0
4
57
1.20
47725146--47725187
21
1.9
23
85
9
61
28
4
2
64
1.26
47725092--47725243
79
1.9
78
80
9
175
29
4
3
62
1.31
47725417--47725443
1
27.0
1
100
0
54
0
0
0
100
0.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47725508--47725601
2
50.5
2
73
17
60
38
2
5
54
1.35
47725508--47725560
23
2.3
23
84
9
65
39
1
1
56
1.21
47725652--47725718
24
2.8
24
78
14
77
35
0
2
61
1.12
47725759--47725917
21
7.5
20
70
19
83
32
5
1
60
1.29
47725834--47725867
17
2.1
17
88
5
52
32
2
0
64
1.08
47725759--47725915
44
3.6
43
75
14
117
32
5
1
60
1.29
47725843--47725919
17
4.8
17
72
18
58
33
7
2
55
1.42
47726089--47726141
20
2.5
21
81
6
63
37
3
1
56
1.28
47726089--47726141
22
2.4
22
81
6
63
37
3
1
56
1.28
47726089--47726128
15
2.6
16
88
7
57
37
5
0
57
1.21
47726113--47726147
18
2.0
17
88
5
52
34
0
5
60
1.21
47726192--47726233
22
1.9
22
85
0
57
26
2
11
59
1.45
47726130--47726233
47
2.2
46
77
15
115
25
1
12
59
1.43
47726224--47726307
12
6.4
13
67
20
50
32
2
11
53
1.50
47726396--47726449
15
3.5
15
82
5
54
29
3
5
61
1.36
47726461--47726497
2
18.5
2
88
0
56
43
2
2
51
1.30
47726656--47726703
23
2.0
23
84
4
60
27
2
10
60
1.41
47726715--47726774
2
31.5
2
76
15
56
43
0
3
53
1.17
47726945--47727020
2
39.5
2
76
7
77
43
0
2
53
1.14
47726945--47727020
10
6.8
11
80
16
86
43
0
2
53
1.14
47727202--47727229
1
28.0
1
100
0
56
0
0
0
100
0.00
47732440--47732568
40
3.3
40
91
6
196
24
21
27
27
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47732440--47732601
80
2.1
76
82
7
193
25
20
26
26
1.99
47740300--47740525
40
5.7
40
91
4
307
25
21
26
26
2.00
47740300--47740558
120
2.2
120
82
7
305
26
21
26
25
1.99
47742026--47742072
15
3.3
15
73
11
53
31
0
23
44
1.54
47746578--47746752
43
4.1
42
82
6
192
32
17
25
25
1.97
47746603--47746764
43
3.8
43
88
1
227
29
18
26
25
1.98
47747135--47747205
21
3.5
21
78
3
65
4
42
19
33
1.71
47747155--47747225
21
3.4
21
75
9
65
2
42
22
32
1.68
47752025--47752218
50
3.9
49
78
7
194
28
28
17
25
1.97
47754351--47754404
15
3.7
15
75
20
51
61
18
12
7
1.54
47757425--47757609
101
1.9
100
83
4
248
27
28
17
25
1.98
47759445--47759690
9
27.0
9
70
12
137
36
1
15
46
1.56
47759482--47759613
48
2.8
48
91
3
205
37
2
15
45
1.58
47759545--47759720
30
5.6
30
73
19
162
36
1
15
46
1.56
47759530--47759751
64
3.5
64
96
0
390
36
1
15
46
1.56
47759476--47759678
112
1.8
111
91
3
336
35
1
15
46
1.57
47759449--47759735
18
17.8
16
70
15
166
36
2
14
46
1.57
47759482--47759746
9
30.8
9
68
17
129
37
2
14
45
1.58
47759532--47759791
128
2.0
127
84
5
281
37
2
15
44
1.61
47759845--47760419
99
5.7
99
76
11
578
53
4
6
36
1.45
47759862--47760432
197
2.9
195
91
5
903
53
4
6
35
1.47
47760057--47760433
208
1.8
210
93
1
659
54
3
6
35
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47761281--47761319
20
2.0
20
100
0
78
53
10
15
20
1.70
47762801--47762854
21
2.6
21
88
5
74
42
29
0
27
1.56
47762762--47762834
28
2.6
28
81
12
87
39
32
0
27
1.57
47763048--47763128
22
3.7
22
77
8
94
37
41
1
19
1.60
47763126--47763173
15
3.4
15
82
8
57
47
31
2
18
1.60
47764454--47764496
21
2.0
22
95
4
79
51
13
4
30
1.62
47765109--47765240
47
2.8
47
82
1
165
34
27
15
23
1.94
47776131--47776237
53
2.0
53
87
3
153
20
26
19
33
1.97
47778126--47778220
25
3.8
25
88
2
138
25
23
23
28
1.99
47778126--47778256
25
5.2
24
82
8
129
29
20
22
27
1.99
47778467--47778531
31
2.1
32
91
5
107
32
15
23
29
1.95
47789852--47789911
31
2.0
31
93
3
104
31
15
25
28
1.95
47790585--47790742
54
2.9
54
89
0
235
24
23
15
36
1.94
47790721--47790842
47
2.6
47
96
0
217
25
22
13
37
1.92
47795315--47795502
40
4.7
40
90
5
292
25
27
21
26
1.99
47797746--47797802
27
2.0
27
83
6
69
17
5
19
57
1.58
47798952--47798996
19
2.4
19
92
0
72
33
20
33
13
1.91
47799283--47799342
27
2.3
26
82
2
66
21
21
20
36
1.95
47799711--47799750
19
2.1
19
95
0
71
20
2
5
72
1.15
47807670--47807816
20
7.3
20
70
3
116
17
29
18
35
1.93
47807674--47807849
40
4.4
41
86
4
227
18
29
17
35
1.93
47807682--47807880
40
5.0
40
85
2
177
17
28
17
36
1.92
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47809353--47809392
20
1.9
22
85
10
57
17
5
20
57
1.58
47809485--47809575
43
2.1
43
89
4
139
26
28
24
20
1.99
47825261--47825436
46
3.8
46
76
12
189
21
21
28
28
1.98
47825258--47825429
93
1.8
93
92
0
290
21
21
29
27
1.99
47836788--47836960
46
3.8
46
77
12
176
21
21
28
28
1.98
47843378--47843429
22
2.4
22
90
6
79
38
25
13
23
1.91
47843421--47843464
16
2.8
16
85
0
61
22
27
25
25
2.00
47843450--47843549
38
2.6
38
85
3
130
34
29
17
20
1.95
47854778--47854823
23
2.0
23
95
0
83
30
19
17
32
1.95
47856259--47856344
28
3.0
28
81
3
109
27
15
27
29
1.96
47856259--47856329
29
2.5
29
83
2
90
29
14
25
30
1.94
47857349--47857396
21
2.2
22
81
3
53
18
4
20
56
1.58
47863579--47863614
16
2.2
16
95
0
63
52
13
22
11
1.72
47863832--47863901
28
2.5
29
83
4
90
28
14
27
30
1.95
47871444--47871597
28
5.5
28
95
0
247
33
28
11
26
1.91
47873023--47873047
13
1.9
13
100
0
50
16
20
0
64
1.30
47876201--47876425
40
5.7
40
87
5
305
24
22
27
25
2.00
47876201--47876458
119
2.2
119
82
6
301
25
21
27
25
2.00
47884213--47884397
79
2.3
81
84
7
236
24
22
27
25
2.00
47884214--47884397
40
4.6
40
83
9
216
24
22
27
25
2.00
47884266--47884430
79
2.1
79
84
6
210
26
21
27
25
1.99
47886940--47886983
20
2.2
20
87
0
61
43
18
2
36
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
47886946--47886991
20
2.3
20
84
0
56
45
15
4
34
1.66
47891013--47891159
33
4.4
33
68
12
95
29
21
14
34
1.93
47890979--47891183
101
2.0
101
86
3
288
29
23
14
32
1.94
47891757--47891796
21
2.0
20
90
5
62
42
22
0
35
1.54
47898268--47898395
25
5.2
24
72
15
100
25
21
19
33
1.97
47898349--47898413
25
2.6
25
80
9
87
26
20
23
30
1.98
47901348--47901498
28
5.4
28
92
1
223
27
11
27
33
1.92
47903558--47903672
42
2.7
41
80
6
122
33
25
14
26
1.94
47905778--47905828
25
2.0
25
84
0
66
29
15
31
23
1.95
47905803--47905860
28
2.0
29
90
3
91
29
13
29
27
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325