genome.fa.s5.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  96  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31571022--31571361	46	7.7	46	84	10	444	22	24	15	38	1.92
31571022--31571361	84	3.9	88	90	4	453	22	24	15	38	1.92
31571191--31571350	38	4.0	38	85	12	230	23	25	17	34	1.96
31576460--31576809	46	8.0	46	85	10	464	22	24	15	37	1.93
31576504--31576809	84	3.5	84	94	3	495	22	24	16	36	1.94
31576639--31576798	38	4.0	38	87	12	248	23	25	17	33	1.96
31580466--31580506	22	1.9	21	85	5	55	2	19	7	70	1.22
31585527--31585577	18	2.8	18	78	0	66	29	13	9	47	1.75
31586815--31586855	22	1.9	21	85	5	55	2	19	7	70	1.22
31586898--31586949	22	2.3	22	83	9	61	32	7	5	53	1.53
31590436--31590490	3	17.7	3	78	14	58	63	0	5	30	1.17
31590435--31590496	15	4.2	14	78	14	63	64	0	6	29	1.18
31591546--31591600	17	3.1	17	78	7	56	18	14	47	20	1.83
31594535--31594584	10	5.0	10	79	16	59	58	0	2	40	1.10
31594535--31594584	20	2.5	20	83	6	66	58	0	2	40	1.10
31599390--31599571	43	4.2	43	83	5	208	29	26	15	27	1.96
31599591--31599645	22	2.5	20	75	16	56	36	1	3	58	1.26
31601208--31601248	20	2.0	20	100	0	82	51	14	9	24	1.72
31603850--31603898	22	2.3	21	82	10	55	32	42	2	22	1.65
31603954--31604034	21	3.6	22	71	14	76	41	24	1	32	1.63
31603938--31604025	46	1.9	46	90	4	142	40	22	2	34	1.67
31604051--31604100	25	2.0	25	100	0	100	44	8	4	44	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31604228--31604474	40	6.1	40	87	4	309	14	20	25	38	1.91
31604228--31604474	81	3.0	80	89	4	354	14	20	25	38	1.91
31606362--31606406	3	15.0	3	100	0	90	66	0	0	33	0.92
31609760--31609854	43	2.2	45	84	3	122	31	23	12	32	1.92
31609506--31610607	177	6.2	177	82	4	1084	27	23	18	30	1.97
31609503--31610607	354	3.1	350	81	4	1194	27	23	18	30	1.98
31610451--31610560	44	2.5	45	80	4	125	30	23	20	25	1.98
31610717--31611039	129	2.5	129	92	2	524	39	13	17	29	1.88
31610717--31611039	64	5.0	64	88	2	468	39	13	17	29	1.88
31620698--31620906	46	4.6	46	73	4	183	27	18	20	33	1.96
31620646--31620925	134	2.1	135	87	0	400	28	18	19	33	1.96
31621081--31621151	35	2.0	35	97	0	133	12	25	35	26	1.92
31628556--31628604	8	6.0	8	78	4	53	81	2	10	6	0.94
31629329--31629399	35	2.0	35	94	0	124	12	23	35	28	1.92
31629340--31629412	35	2.1	35	82	5	85	12	27	42	17	1.85
31630562--31631172	44	13.7	44	73	10	359	27	22	18	31	1.97
31630559--31630945	90	4.3	90	78	6	403	28	22	18	31	1.97
31630559--31631168	89	6.8	89	75	8	472	28	22	18	30	1.97
31630562--31631171	179	3.4	179	84	3	687	27	22	18	31	1.97
31630559--31631168	134	4.6	134	74	10	349	28	22	18	30	1.97
31634827--31634852	13	2.0	13	100	0	52	46	7	23	23	1.78
31635919--31635963	19	2.3	20	88	7	67	42	13	22	22	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31637892--31637920	3	9.7	3	100	0	58	68	0	0	31	0.89
31639532--31639621	9	10.1	9	86	7	85	41	26	8	23	1.84
31639532--31639621	18	5.1	18	82	2	101	41	26	8	23	1.84
31639669--31639766	17	5.4	17	64	13	52	50	13	5	31	1.63
31639622--31639749	20	6.9	19	63	12	52	46	14	6	32	1.69
31639622--31639771	37	4.1	37	91	0	246	47	14	5	33	1.66
31640899--31640956	28	2.2	26	87	6	80	27	0	25	46	1.53
31641109--31641142	13	2.6	13	90	0	50	17	0	47	35	1.48
31643071--31643099	14	2.1	14	100	0	58	20	6	48	24	1.74
31643894--31644150	126	2.0	126	100	0	514	28	11	27	31	1.92
31659076--31659127	26	2.0	26	81	7	61	61	7	7	23	1.49
31659653--31659692	15	2.7	15	85	11	55	40	5	0	55	1.22
31659653--31659696	16	2.8	16	86	10	56	40	6	0	52	1.28
31660138--31660332	105	1.9	105	86	0	282	30	22	12	34	1.91
31661400--31661444	23	2.0	23	83	12	58	53	2	4	40	1.33
31663165--31663196	11	2.9	11	90	0	55	40	18	0	40	1.51
31663205--31663236	15	2.1	15	94	0	55	40	0	0	59	0.97
31663331--31663442	48	2.3	47	83	11	138	36	10	4	48	1.58
31663337--31663464	48	2.7	45	80	14	132	32	10	5	51	1.60
31665427--31665469	16	2.8	16	86	6	54	69	4	0	25	1.07
31665725--31665793	21	3.3	20	75	18	61	59	2	5	31	1.36
31665734--31665844	10	10.6	10	67	25	61	56	0	6	36	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31671338--31671706	126	2.9	126	89	0	576	28	20	16	34	1.95
31671966--31672038	20	3.8	20	69	20	73	45	24	0	30	1.54
31672147--31672197	22	2.3	23	86	3	77	47	31	0	21	1.51
31673753--31673862	45	2.6	41	77	9	107	31	5	29	33	1.80
31673988--31674042	15	3.4	16	80	16	53	50	1	0	47	1.11
31674008--31674042	18	2.0	17	88	5	52	54	0	0	45	0.99
31673956--31674643	120	5.8	116	84	9	634	51	3	2	42	1.32
31674128--31674283	18	8.0	18	67	24	77	53	1	1	42	1.19
31674194--31674236	22	1.9	23	85	4	61	60	2	0	37	1.10
31674098--31674643	241	2.3	239	93	2	916	52	3	1	42	1.29
31674460--31674524	18	4.2	16	72	18	57	60	0	1	38	1.07
31674487--31674524	18	2.2	17	90	4	58	63	0	2	34	1.09
31684591--31684740	75	2.0	75	98	0	291	25	16	18	39	1.91
31689265--31689331	18	4.1	18	74	20	74	13	28	43	14	1.84
31689275--31689349	31	2.4	31	97	0	141	16	29	42	12	1.83
31689791--31689860	34	2.0	35	83	8	90	34	20	21	24	1.97
31693955--31694006	24	2.2	24	85	0	68	53	9	3	32	1.51
31701122--31701266	46	3.2	43	74	8	128	26	28	18	26	1.98
31705432--31705483	24	2.2	24	85	0	68	53	9	3	32	1.51
31705984--31706046	19	3.3	19	78	10	65	17	26	9	46	1.79
31706059--31706132	21	3.7	19	82	13	87	22	10	1	64	1.32
31706057--31706138	20	3.8	21	78	16	80	23	10	1	64	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31706781--31706828	21	2.3	20	80	16	53	72	10	4	12	1.24
31721248--31721453	44	4.5	45	75	11	159	26	23	22	28	1.99
31721421--31721977	88	6.4	87	84	5	617	25	22	24	26	2.00
31721473--31721976	86	5.8	85	85	4	623	25	23	24	26	2.00
31721480--31721985	263	1.9	262	88	1	771	25	22	25	26	2.00
31721990--31722353	131	2.8	131	86	1	482	26	24	20	29	1.99
31722171--31722371	44	4.6	44	72	6	165	25	23	21	28	1.99
31722331--31722555	88	2.6	87	87	2	317	21	22	21	34	1.97
31722705--31722832	64	2.0	64	93	0	220	33	14	20	31	1.93
31723501--31723601	53	1.9	53	89	4	159	52	7	14	24	1.69
31731714--31731874	42	3.7	42	80	7	162	29	26	14	29	1.95
31731782--31731918	49	2.9	47	81	6	141	30	25	13	29	1.94
31731808--31731965	47	3.3	47	77	11	135	30	24	14	30	1.95
31731987--31732135	31	4.8	31	88	3	228	26	28	18	26	1.98
31732111--31732287	50	3.5	50	91	0	282	25	22	15	36	1.93
31733152--31733191	17	2.4	17	100	0	80	55	15	12	17	1.70
31734916--31734976	30	2.0	30	100	0	122	32	22	22	21	1.98
31735181--31735358	41	4.4	40	87	1	167	36	19	20	23	1.95
31735215--31735358	41	3.5	40	85	5	173	36	19	20	24	1.95
31735913--31735964	21	2.5	21	76	17	54	19	1	46	32	1.61
31736850--31736925	3	25.7	3	84	7	102	60	1	38	0	1.05
31737234--31737268	16	2.2	16	100	0	70	37	5	22	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31742062--31742132	32	2.2	32	84	0	97	30	2	15	50	1.58
31743545--31743582	14	2.7	14	91	0	58	44	7	0	47	1.32
31749628--31749820	39	4.9	39	85	1	262	32	26	20	20	1.97
31749638--31749820	78	2.3	78	92	1	305	31	26	21	21	1.98
31751675--31751707	2	16.5	2	100	0	66	0	0	48	51	1.00
31752904--31753139	118	2.0	117	98	0	454	34	21	19	25	1.96
31754939--31755017	39	2.0	39	100	0	158	37	18	20	22	1.94
31759698--31759783	42	2.0	42	100	0	172	32	24	20	22	1.98
31760742--31760793	22	2.3	23	81	15	65	40	3	0	55	1.18
31760638--31760815	96	1.8	96	80	10	211	40	3	6	49	1.46

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325