genome.fa.s5.2.7.7.80.10.50.1000.222.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  222  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69707805--69707855	15	3.2	16	80	5	59	31	0	5	62	1.19
69709928--69709982	24	2.3	24	87	0	74	47	5	34	12	1.65
69710661--69710877	35	6.2	35	79	6	219	37	15	21	25	1.93
69710661--69710872	70	3.0	69	83	7	250	37	15	21	25	1.93
69710665--69710871	105	2.0	104	88	4	310	38	15	20	25	1.92
69728679--69728723	23	2.0	23	82	8	56	37	8	13	40	1.76
69732052--69732128	20	3.9	19	78	11	66	38	15	11	33	1.84
69732289--69732388	24	4.2	24	77	13	102	34	18	24	24	1.96
69735268--69735438	93	1.8	93	92	0	288	21	21	28	28	1.99
69735272--69735443	46	3.7	46	77	13	190	22	21	27	28	1.99
69747620--69747781	42	3.8	42	81	4	191	32	16	24	27	1.96
69752157--69752216	29	2.1	29	96	0	111	31	16	11	40	1.85
69757690--69757977	84	3.4	84	80	3	285	45	12	9	32	1.75
69757854--69758585	88	8.4	88	82	5	745	42	12	12	33	1.79
69758018--69758750	178	4.2	175	85	7	864	42	10	12	33	1.78
69758529--69758667	73	1.9	74	89	1	217	43	10	14	32	1.79
69763037--69763083	23	2.0	23	100	0	94	25	12	8	53	1.67
69763832--69763870	18	2.2	18	86	9	53	64	0	2	33	1.08
69771977--69772002	12	2.2	12	100	0	52	26	7	7	57	1.54
69772107--69772152	25	1.9	25	86	8	69	54	0	6	39	1.26
69776075--69776147	33	2.2	34	95	2	130	23	13	35	27	1.92
69776629--69776854	40	5.7	40	77	5	188	25	22	26	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69776630--69776812	80	2.3	81	86	1	253	25	22	27	24	2.00
69776629--69776847	120	1.8	120	81	3	271	25	22	27	24	2.00
69776661--69776854	80	2.4	80	79	3	210	26	21	26	25	2.00
69784671--69784775	40	2.7	40	86	5	153	24	21	27	25	2.00
69786556--69786607	25	2.1	25	100	0	104	28	9	11	50	1.70
69787311--69787353	21	2.0	21	95	0	77	23	16	41	18	1.89
69790911--69791011	50	2.0	50	96	0	184	22	20	20	35	1.96
69793146--69793170	12	2.1	12	100	0	50	16	8	16	60	1.58
69793885--69794156	45	5.8	46	76	13	211	27	20	29	21	1.98
69801112--69801164	21	2.5	21	87	0	79	18	16	43	20	1.88
69810107--69810131	12	2.1	12	100	0	50	16	8	16	60	1.58
69810841--69811110	46	5.7	48	78	9	234	28	21	29	20	1.98
69810841--69811110	99	2.8	94	78	13	268	28	21	29	20	1.98
69823877--69823946	32	2.2	32	82	9	90	35	2	1	60	1.21
69824704--69825183	240	2.0	240	97	0	908	38	12	7	40	1.73
69833144--69833187	23	1.9	23	90	0	70	18	22	22	36	1.95
69838405--69838439	18	1.9	18	94	0	61	25	22	20	31	1.98
69838452--69838492	18	2.2	19	86	4	57	43	9	21	24	1.83
69838471--69838582	45	2.5	45	86	2	163	42	16	16	23	1.88
69838782--69838868	40	2.2	39	83	8	104	40	19	6	33	1.78
69842871--69843141	40	6.8	40	91	3	372	23	23	28	25	2.00
69850196--69850398	40	5.1	40	91	4	263	24	22	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69853002--69853033	15	2.1	15	100	0	64	56	6	0	37	1.25
69853519--69853556	18	2.1	18	95	0	67	34	10	5	50	1.59
69854116--69854144	15	1.9	15	100	0	58	65	0	0	34	0.93
69855095--69855147	22	2.4	22	93	0	88	41	1	16	39	1.60
69855283--69855529	125	2.0	125	92	1	415	35	17	17	29	1.93
69856100--69856124	12	2.1	12	100	0	50	16	8	40	36	1.77
69859111--69859206	30	3.2	30	77	5	104	15	14	38	31	1.88
69859705--69859736	7	4.6	7	92	0	55	56	12	3	28	1.51
69859724--69859783	29	2.1	29	93	0	102	46	8	8	36	1.64
69860654--69860761	53	2.1	53	94	1	191	62	4	1	31	1.26
69860654--69860739	26	3.3	26	70	20	81	63	3	2	30	1.23
69862116--69862234	57	2.1	57	95	0	211	38	9	25	26	1.86
69866655--69866692	20	1.9	20	88	0	58	42	7	5	44	1.56
69871995--69872161	43	3.9	43	75	3	158	33	23	13	29	1.93
69879561--69879727	43	3.9	42	79	6	135	32	24	14	28	1.94
69884233--69884278	24	1.9	24	100	0	92	32	6	26	34	1.82
69889279--69889343	32	2.0	32	100	0	130	24	21	12	41	1.87
69889790--69889873	43	2.0	43	95	0	150	30	32	17	19	1.95
69896897--69896964	9	7.6	9	81	0	73	44	20	7	27	1.78
69896896--69896965	18	3.9	18	82	0	86	44	20	7	28	1.77
69897050--69897087	18	2.1	18	95	0	67	13	0	44	42	1.43
69897417--69897465	25	2.0	25	87	0	71	46	16	8	28	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69897840--69897875	17	2.1	18	89	5	56	58	0	2	38	1.13
69897833--69897875	18	2.3	18	84	4	50	55	0	2	41	1.12
69901485--69901526	22	1.9	22	90	0	66	61	7	19	11	1.52
69902762--69902794	14	2.3	15	90	10	52	42	3	0	54	1.15
69903862--69903917	22	2.7	21	78	8	60	44	3	3	48	1.37
69910930--69911395	231	2.0	231	99	0	923	27	14	22	34	1.94
69921564--69921624	21	2.9	21	68	4	52	39	1	1	57	1.18
69921630--69921777	79	1.9	73	88	8	215	33	12	12	42	1.79
69921833--69921867	17	2.1	17	88	0	52	20	14	20	45	1.85
69925412--69925589	27	6.6	27	79	3	115	28	28	16	26	1.97
69925412--69925589	54	3.3	55	80	10	204	28	28	16	26	1.97
69925433--69925588	82	1.9	81	85	3	215	28	28	16	26	1.97
69964752--69965008	53	4.9	52	78	8	204	36	12	22	28	1.90
69964752--69965008	106	2.4	105	78	6	279	36	12	22	28	1.90
69969084--69969212	66	2.0	66	96	0	240	38	20	8	32	1.83
69970827--69970876	22	2.4	21	77	9	57	34	0	2	64	1.05
69970831--69970874	22	2.0	23	86	4	63	31	0	2	65	1.05
69970823--69970874	14	3.9	14	72	7	54	32	0	1	65	1.04
69972826--69972876	19	2.6	20	71	3	50	33	0	3	62	1.13
69977242--69977473	49	4.7	50	81	4	254	25	16	26	31	1.96
69977241--69977466	101	2.3	98	83	3	265	25	15	26	31	1.96
69979524--69979584	30	2.0	30	83	0	77	39	4	24	31	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69980322--69980464	64	2.2	64	94	0	250	30	15	27	25	1.96
69980245--69980543	64	4.6	64	81	6	235	31	15	28	25	1.96
69983930--69984155	40	5.7	41	88	4	288	26	26	20	26	1.99
69990454--69990529	37	2.1	37	83	14	95	43	22	7	26	1.80
70012675--70012720	20	2.2	21	96	3	85	39	8	13	39	1.75
70013350--70013435	45	1.9	45	95	0	154	25	13	24	36	1.93
70017499--70017523	13	1.9	13	100	0	50	32	16	16	36	1.90
70018683--70018714	17	1.9	16	93	6	55	18	28	0	53	1.45
70025683--70025709	6	4.5	6	100	0	54	62	0	18	18	1.32
70025542--70025937	197	2.0	197	99	0	783	42	9	17	30	1.81
70025880--70025906	6	4.5	6	100	0	54	62	0	18	18	1.32
70026759--70026818	20	3.1	19	81	13	61	16	18	15	50	1.79
70029291--70029320	12	2.5	12	94	0	51	6	23	40	30	1.80
70034032--70034070	21	1.9	20	84	5	51	46	20	2	30	1.64
70045076--70045247	93	1.8	93	92	0	290	27	28	22	21	1.99
70045068--70045243	46	3.8	46	78	10	205	28	27	21	21	1.99
70045119--70045262	46	3.1	46	71	18	127	30	27	20	22	1.98
70049584--70049622	14	2.8	13	85	11	51	71	0	2	25	0.98
70051452--70051638	48	3.9	48	87	2	277	23	18	32	26	1.97
70051479--70051684	96	2.1	96	81	5	229	24	19	30	24	1.98
70053041--70053119	37	2.1	37	90	0	122	25	31	18	24	1.98
70053238--70053656	49	8.8	48	91	3	625	28	29	9	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70053238--70053656	96	4.4	94	91	3	624	28	29	9	32	1.88
70053238--70053656	145	2.9	145	92	2	659	28	29	9	32	1.88
70056851--70056890	21	1.9	21	85	10	55	22	2	25	50	1.62
70062166--70062210	22	2.0	24	82	8	58	46	15	4	33	1.66
70064472--70064695	40	5.7	40	86	5	287	25	28	21	24	1.99
70064474--70064695	119	1.9	119	83	5	297	25	27	22	24	2.00
70064472--70064695	79	2.8	79	85	6	283	25	28	21	24	1.99
70065812--70065931	56	2.1	56	98	0	231	22	23	9	45	1.81
70072399--70072661	40	6.6	39	87	4	325	25	27	20	25	1.99
70072399--70072614	78	2.7	78	86	6	301	26	27	19	26	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325