Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  153  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48475710--48475971
46
5.5
47
79
7
192
22
29
19
28
1.98
48475752--48475971
94
2.3
94
84
3
282
22
29
20
27
1.99
48478327--48478362
18
2.0
18
88
0
54
25
22
13
38
1.91
48487817--48487842
9
2.9
9
100
0
52
57
0
0
42
0.98
48490627--48490803
46
3.9
43
76
14
176
23
19
27
29
1.98
48490625--48490795
93
1.8
93
91
0
279
23
20
27
28
1.99
48493713--48493791
15
5.4
15
77
10
83
10
17
13
58
1.63
48493704--48493790
29
3.0
29
81
8
95
10
17
16
56
1.67
48496179--48496346
46
3.6
46
71
15
148
22
18
28
30
1.97
48503120--48503338
49
4.6
49
71
12
179
23
26
21
27
1.99
48503267--48503480
46
4.5
47
70
13
147
22
24
21
31
1.98
48511541--48511764
104
2.2
104
93
1
378
17
19
31
31
1.95
48511683--48511834
71
2.1
72
92
1
252
23
17
29
30
1.97
48519096--48519319
104
2.2
104
93
1
378
17
19
31
31
1.95
48519238--48519389
71
2.1
72
92
1
252
23
17
29
30
1.97
48525373--48525433
32
1.9
32
89
0
95
22
21
27
27
1.99
48530564--48530594
8
3.9
8
95
0
53
38
22
22
16
1.92
48530839--48531323
27
18.0
27
78
4
325
40
18
8
32
1.82
48531187--48531316
55
2.4
55
82
6
156
42
18
9
30
1.81
48531563--48531655
40
2.3
41
85
5
127
21
20
27
30
1.98
48532058--48532111
22
2.5
22
78
0
63
18
18
24
38
1.93
48532196--48532234
21
1.9
20
89
5
60
5
7
48
38
1.54
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48532667--48532700
17
1.9
18
88
5
52
50
2
11
35
1.54
48536510--48536566
17
3.4
17
74
13
64
66
19
3
10
1.36
48536502--48536568
33
2.0
33
97
0
125
65
16
2
14
1.39
48536501--48536553
16
3.2
16
75
15
63
69
13
1
15
1.27
48536776--48536801
13
2.0
13
100
0
52
15
38
30
15
1.88
48540043--48540247
27
7.6
27
82
3
214
26
14
29
29
1.95
48540044--48540247
54
3.8
54
83
3
239
25
14
29
29
1.95
48547816--48548020
27
7.6
27
83
3
223
26
15
29
29
1.96
48547817--48548020
54
3.8
54
84
3
257
25
15
29
29
1.96
48557548--48557590
21
2.1
20
86
4
59
13
41
20
23
1.88
48558701--48558795
24
4.1
23
80
11
106
26
22
17
33
1.96
48561294--48561491
100
2.0
100
84
2
263
26
16
22
34
1.95
48561299--48561486
49
3.8
49
77
2
187
27
15
22
34
1.94
48567339--48567369
16
1.9
16
100
0
62
32
25
3
38
1.72
48573910--48573965
11
5.5
11
71
16
57
35
12
19
32
1.89
48573899--48573965
20
3.3
20
93
0
116
34
11
20
32
1.90
48574014--48574145
25
5.4
24
92
3
203
29
18
22
28
1.98
48574353--48574415
31
2.0
31
90
0
99
38
15
22
23
1.93
48577631--48577663
13
2.6
13
90
4
50
48
12
0
39
1.40
48578101--48578140
20
2.0
20
100
0
80
55
20
5
20
1.62
48580571--48580653
5
15.8
5
78
16
80
75
1
4
18
1.04
48580591--48580654
6
11.5
6
88
3
57
78
1
4
15
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48580571--48580653
37
2.2
36
83
8
96
75
1
4
18
1.04
48582684--48582726
22
1.9
23
85
4
61
9
37
16
37
1.81
48592056--48592129
35
2.1
35
90
2
114
41
18
6
32
1.77
48595786--48595823
10
3.8
10
92
0
58
60
7
0
31
1.25
48597547--48597586
21
1.9
21
84
0
53
57
12
2
27
1.48
48598583--48598694
29
3.9
29
74
5
102
25
30
15
28
1.96
48598590--48598702
58
2.0
57
82
5
138
25
29
14
30
1.95
48598917--48598959
16
2.7
16
88
0
59
4
16
23
55
1.59
48601332--48601483
42
3.6
41
78
5
162
31
15
22
30
1.94
48601548--48601588
21
2.0
21
85
0
55
51
2
17
29
1.58
48602188--48602256
30
2.3
30
89
0
111
23
34
21
20
1.96
48603817--48603870
24
2.2
24
80
0
63
33
1
46
18
1.60
48605017--48605067
19
2.7
19
87
6
77
9
27
43
19
1.82
48605603--48605655
26
2.0
26
85
7
72
5
1
50
41
1.36
48609356--48609448
37
2.5
37
83
0
105
27
17
26
27
1.97
48615115--48615147
18
1.9
17
88
11
50
27
15
12
45
1.81
48616431--48616510
29
2.8
29
83
9
103
26
35
16
22
1.95
48616431--48616504
28
2.6
29
86
2
105
28
33
14
22
1.94
48616735--48616773
16
2.5
16
91
4
62
12
20
20
46
1.83
48623503--48623545
22
1.9
23
90
4
70
55
4
0
39
1.20
48625397--48625442
23
2.0
23
91
0
74
32
45
13
8
1.73
48627702--48627739
17
2.2
18
90
4
60
31
10
0
57
1.32
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48629746--48629854
56
1.9
56
88
3
166
26
14
22
35
1.93
48653285--48653502
40
5.5
40
92
2
325
26
26
22
24
2.00
48659920--48659945
6
4.3
6
100
0
52
53
0
0
46
1.00
48661967--48662173
67
3.2
64
77
9
186
31
16
29
22
1.96
48664206--48664251
18
2.5
19
76
20
53
43
13
6
36
1.69
48667153--48667192
18
2.2
18
100
0
80
30
22
15
32
1.94
48674973--48675005
17
1.9
17
88
11
50
30
18
12
39
1.87
48683729--48683779
25
2.0
25
100
0
102
37
15
23
23
1.93
48684664--48684857
96
2.0
96
100
0
388
37
21
14
25
1.92
48688375--48688430
17
3.5
17
72
18
57
41
7
14
37
1.73
48690904--48690929
7
3.7
7
100
0
52
57
0
0
42
0.98
48693420--48693497
18
4.2
18
71
9
59
50
0
0
50
1.00
48693428--48693539
48
2.4
48
93
3
192
43
0
0
56
0.99
48693433--48693536
38
2.8
38
81
8
106
42
0
0
57
0.98
48693787--48693845
30
2.0
30
83
6
75
30
16
10
42
1.82
48694630--48694676
22
2.1
22
96
0
85
17
19
14
48
1.81
48695996--48696087
34
2.7
34
86
1
123
34
6
17
41
1.75
48696099--48696154
9
5.9
9
84
12
76
23
0
21
55
1.44
48696100--48696154
20
2.8
20
86
2
85
21
0
21
56
1.42
48711964--48711994
16
1.9
16
100
0
62
45
22
0
32
1.53
48713689--48713750
9
6.6
9
85
10
88
22
0
20
56
1.42
48713689--48713750
20
3.3
18
84
10
88
22
0
20
56
1.42
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48713689--48713750
29
2.2
28
91
2
97
22
0
20
56
1.42
48720089--48720273
93
2.0
93
84
1
244
36
18
20
23
1.95
48723374--48723438
27
2.4
27
97
0
121
21
23
36
18
1.95
48723554--48723586
16
2.1
16
94
0
57
78
0
21
0
0.75
48728413--48728630
40
5.5
40
92
3
343
23
22
28
25
1.99
48733469--48734764
152
8.6
152
91
2
2030
28
6
7
57
1.52
48733945--48733996
23
2.3
23
82
0
59
38
1
0
59
1.08
48734798--48734838
17
2.5
16
88
7
64
14
7
2
75
1.12
48734809--48734870
15
3.9
15
72
8
52
20
4
4
69
1.26
48734798--48734869
16
4.5
16
69
10
58
19
5
4
70
1.23
48735353--48735398
3
15.3
3
78
17
51
2
36
0
60
1.09
48738902--48738947
18
2.6
18
85
0
65
45
6
4
43
1.49
48740094--48740415
131
2.4
129
84
4
403
27
16
19
36
1.94
48752071--48752613
168
3.2
168
89
2
822
31
21
23
24
1.99
48754031--48754065
18
1.9
18
88
0
52
45
8
5
40
1.58
48755207--48755593
131
2.9
129
85
3
470
26
17
19
36
1.94
48756479--48756522
18
2.3
19
80
11
54
29
2
0
68
1.02
48757405--48757449
19
2.3
20
84
3
56
71
2
2
24
1.09
48761124--48761192
30
2.2
32
82
12
90
26
2
2
68
1.18
48762721--48762757
18
2.1
18
89
0
56
21
27
10
40
1.86
48767364--48767419
29
2.0
28
83
16
71
28
1
5
64
1.26
48771212--48771276
32
2.0
32
96
0
121
43
6
23
27
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48771166--48771322
78
2.0
78
94
0
278
40
10
22
25
1.86
48771256--48771444
46
4.1
45
86
3
236
42
15
22
19
1.89
48771708--48771740
17
2.0
17
94
5
59
48
0
15
36
1.45
48775050--48775105
3
18.7
3
84
0
58
37
0
3
58
1.15
48775051--48775105
15
3.7
15
85
0
65
38
0
3
58
1.16
48779813--48779842
7
4.3
7
100
0
60
60
26
0
13
1.34
48779981--48780016
11
3.3
11
84
0
54
16
19
19
44
1.87
48780802--48780844
19
2.4
18
85
11
61
44
13
4
37
1.65
48783563--48783659
48
2.0
48
97
0
185
51
18
10
19
1.74
48792462--48792641
40
4.6
40
82
2
105
23
26
24
25
2.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325