genome.fa.s5.2.7.7.80.10.50.1000.205.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  205  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63898524--63898626	37	2.8	37	96	0	188	22	19	32	26	1.97
63910217--63910376	56	2.9	55	82	3	196	31	33	16	18	1.93
63912889--63913053	48	3.5	47	85	4	147	23	27	18	29	1.98
63912921--63913068	48	3.1	48	85	3	201	25	27	18	28	1.98
63915345--63915451	43	2.5	43	80	8	119	17	24	36	21	1.95
63921062--63921091	14	2.1	14	93	0	51	33	0	46	20	1.51
63921152--63921210	29	2.0	29	96	0	109	32	11	11	44	1.78
63921156--63921218	29	2.3	27	86	10	85	33	12	9	44	1.75
63926568--63926830	46	5.7	46	90	0	364	39	14	23	22	1.91
63926519--63926830	138	2.3	130	86	4	408	38	15	23	22	1.92
63927091--63927137	25	2.0	25	83	8	62	53	4	14	27	1.60
63943542--63943730	55	3.5	54	84	5	231	21	25	17	35	1.95
63943542--63943738	54	3.6	54	83	4	245	21	25	17	36	1.95
63943717--63943838	47	2.6	47	93	0	208	26	24	13	35	1.93
63948117--63949191	43	25.2	43	74	9	487	19	27	30	21	1.98
63948180--63948601	170	2.5	168	82	6	499	21	25	30	22	1.99
63948380--63948614	128	1.8	129	82	2	303	21	26	29	21	1.99
63948550--63949167	86	7.2	87	78	4	557	19	29	30	20	1.97
63948607--63949191	170	3.4	171	79	4	662	18	29	31	20	1.97
63955152--63955306	75	2.1	75	80	2	168	30	29	14	25	1.94
63956167--63956197	15	2.1	15	100	0	62	38	6	32	22	1.80
63956356--63956394	18	2.3	17	86	8	53	41	5	10	43	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
63957136--63957165	15	2.0	15	93	0	51	23	6	46	23	1.75
63960526--63960556	15	2.1	15	100	0	62	38	6	32	22	1.80
63960715--63960753	18	2.3	17	86	8	53	38	5	12	43	1.65
63961470--63961521	25	2.1	25	88	0	77	36	21	17	25	1.94
63969002--63969102	51	2.1	48	83	10	127	24	21	20	32	1.98
63980208--63980292	43	2.0	43	81	4	100	21	27	28	23	1.99
63984045--63984318	43	6.4	43	71	8	157	20	28	30	20	1.98
63983949--63984294	128	2.7	127	81	5	349	21	28	30	19	1.98
63984052--63984331	128	2.2	128	80	6	309	21	30	29	19	1.97
63984311--63984425	43	2.7	43	84	6	153	25	35	23	15	1.94
63984052--63984363	128	2.4	128	79	6	294	21	30	29	18	1.97
63984371--63984507	69	2.0	69	83	0	175	24	27	27	21	1.99
63984445--63984525	43	1.9	43	87	2	119	22	34	23	19	1.96
63984756--63984827	26	2.8	26	85	2	101	37	11	40	11	1.76
63996360--63996429	30	2.3	30	95	0	131	21	34	24	20	1.97
64019438--64019673	55	4.4	53	76	10	223	36	16	24	22	1.94
64019445--64019646	109	1.8	109	85	5	282	35	17	24	22	1.95
64019763--64019807	23	1.9	24	90	4	74	46	11	20	22	1.81
64019886--64019916	16	1.9	16	93	0	53	41	0	22	35	1.54
64027036--64027293	55	4.8	54	74	13	212	37	15	24	22	1.93
64027044--64027243	108	1.8	109	86	4	287	35	16	25	24	1.95
64040388--64040458	35	2.0	35	88	0	106	35	11	26	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64048284--64048510	115	2.0	115	92	2	375	18	15	19	45	1.85
64051078--64051120	22	2.0	22	90	0	68	39	2	0	58	1.11
64056017--64056051	13	2.7	13	95	0	61	62	5	0	31	1.18
64063423--64063558	37	3.7	37	92	2	211	25	30	18	25	1.98
64063677--64064373	47	14.6	47	91	3	1106	29	28	8	32	1.86
64063677--64064373	145	4.9	141	91	3	1106	29	28	8	32	1.86
64063677--64064373	192	3.6	192	95	0	1209	29	28	8	32	1.86
64071503--64071639	73	1.9	72	83	7	179	35	8	9	47	1.66
64077666--64077708	23	1.9	22	86	13	61	25	16	13	44	1.85
64078471--64078500	15	2.0	15	93	0	51	66	3	0	30	1.07
64080103--64080144	13	3.2	13	96	0	75	16	33	33	16	1.92
64081961--64082056	47	2.1	47	96	2	176	34	23	2	39	1.67
64082290--64082329	20	2.0	21	90	5	64	25	5	7	62	1.42
64082288--64082344	17	3.3	17	80	4	69	22	5	5	66	1.32
64083157--64083299	27	5.3	27	89	0	223	24	26	13	34	1.93
64083511--64083552	18	2.2	19	87	8	59	61	0	16	21	1.34
64085233--64085270	12	3.2	12	82	10	51	15	2	5	76	1.08
64092762--64092873	26	4.2	26	75	8	91	59	8	3	28	1.42
64093781--64093817	9	4.1	9	92	0	65	56	0	18	24	1.41
64097577--64097903	131	2.6	123	79	9	349	36	21	17	24	1.94
64097659--64097915	131	2.0	131	86	1	363	36	18	17	27	1.93
64114696--64114731	12	2.9	12	95	4	63	13	0	11	75	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64118602--64118832	118	2.0	118	92	0	381	28	30	18	22	1.97
64119781--64119856	6	12.3	6	90	9	102	80	0	1	18	0.79
64126951--64127013	10	6.1	10	73	12	56	73	3	4	19	1.15
64127191--64127247	20	2.7	21	83	8	71	45	8	3	42	1.52
64127194--64127238	20	2.2	20	92	0	72	46	8	2	42	1.47
64127193--64127598	156	2.6	154	85	6	527	42	8	4	44	1.53
64133781--64133820	21	1.9	21	89	0	62	20	25	40	15	1.90
64134991--64135162	46	3.7	46	83	9	163	22	30	19	27	1.98
64134950--64135207	140	1.8	140	82	1	329	22	30	18	28	1.97
64136963--64136994	3	10.7	3	100	0	64	65	0	34	0	0.93
64170211--64170741	44	11.7	44	74	9	388	34	18	19	27	1.95
64170211--64170741	89	5.9	89	75	9	394	34	18	19	27	1.95
64170211--64170572	183	2.0	180	80	5	412	34	19	19	26	1.96
64170211--64170733	139	3.8	132	82	7	458	34	18	18	27	1.95
64170729--64170760	14	2.2	15	94	5	57	25	12	37	25	1.91
64178627--64178663	17	2.1	18	90	5	58	18	40	24	16	1.90
64179927--64179957	2	15.5	2	93	0	53	48	3	0	48	1.17
64182883--64182919	19	1.9	19	94	0	65	43	10	18	27	1.83
64183371--64183454	32	2.6	32	79	5	98	28	2	19	50	1.60
64185623--64185730	21	5.0	22	85	5	123	36	25	23	15	1.94
64185623--64185731	42	2.5	42	83	2	146	35	24	22	16	1.95
64186105--64186144	15	2.7	14	85	11	53	52	12	0	35	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64187412--64187443	5	6.4	5	100	0	64	59	0	0	40	0.97
64190748--64190787	19	2.1	19	85	0	53	25	7	22	45	1.78
64191360--64191404	23	2.0	23	83	16	58	60	13	15	11	1.60
64196429--64196578	75	2.0	75	94	0	264	30	10	18	40	1.85
64197619--64197660	19	2.1	21	86	8	61	14	4	4	76	1.12
64197607--64197668	32	1.9	32	84	12	83	17	4	3	74	1.13
64199483--64199540	30	1.9	30	89	6	91	22	37	27	12	1.89
64200886--64200922	19	1.9	19	100	0	74	48	13	10	27	1.75
64203072--64203382	47	6.6	48	71	15	197	28	18	28	24	1.98
64212881--64212906	7	3.7	7	100	0	52	42	0	0	57	0.98
64220004--64220059	24	2.3	24	75	0	58	42	17	17	21	1.89
64220134--64220194	26	2.3	26	83	5	70	36	21	22	19	1.95
64221533--64221580	22	2.2	22	88	0	69	29	29	10	31	1.90
64225276--64225357	30	2.8	29	90	1	119	29	9	28	32	1.89
64225284--64225357	29	2.5	30	91	2	114	31	9	25	33	1.88
64225737--64225873	46	2.9	46	87	7	195	29	18	29	22	1.98
64240162--64240231	28	2.5	28	76	15	65	57	2	2	37	1.29
64242867--64243021	52	3.0	51	80	4	175	27	16	26	30	1.96
64248616--64248770	26	6.2	25	66	13	74	20	18	21	39	1.93
64250828--64251047	89	2.5	86	77	12	214	38	20	8	33	1.83
64251053--64251165	9	12.0	9	69	12	75	62	0	2	33	1.15
64251053--64251161	19	5.7	19	72	11	80	63	0	2	33	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
64251093--64251162	36	1.9	37	85	2	97	64	1	2	31	1.17
64251423--64251462	17	2.3	18	91	4	64	22	5	2	70	1.19
64251398--64251462	18	3.7	18	77	8	71	27	4	3	64	1.28
64251456--64251510	30	1.9	30	85	10	80	41	0	0	58	0.98
64251559--64251748	87	2.2	87	86	1	267	35	8	21	34	1.84
64253376--64253436	30	2.0	30	100	0	122	32	0	22	44	1.54
64257530--64257588	28	2.1	28	93	0	100	33	16	16	32	1.92
64261787--64261864	5	15.0	5	72	17	52	37	2	2	57	1.26
64261853--64261956	45	2.3	46	76	15	117	35	1	4	57	1.31
64273783--64274661	206	4.3	207	90	1	1336	32	17	20	29	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325