genome.fa.s5.2.7.7.80.10.50.1000.149.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  149  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47375756--47375789	14	2.3	15	90	5	52	67	0	0	32	0.91
47375793--47375844	23	2.3	23	84	15	65	65	3	9	21	1.38
47384660--47384881	40	5.6	40	84	8	274	25	27	22	24	2.00
47458576--47458728	81	1.9	79	81	7	184	26	16	27	28	1.97
47458576--47458730	27	5.8	27	77	7	120	26	16	27	29	1.97
47458568--47458745	27	6.7	27	73	11	82	26	16	26	29	1.97
47460084--47460155	21	3.1	23	86	13	87	30	6	26	36	1.83
47461759--47461898	27	5.2	27	86	7	189	17	23	24	35	1.95
47461759--47461898	54	2.6	53	93	3	228	17	23	24	35	1.95
47461759--47461916	27	5.9	27	82	12	184	18	24	22	34	1.96
47468060--47468167	26	4.2	26	90	0	171	32	7	24	36	1.83
47469794--47469935	54	2.6	54	88	2	205	20	24	19	35	1.96
47469801--47469935	27	5.0	27	77	12	143	20	24	20	34	1.96
47488951--47488987	12	2.9	14	88	11	53	48	13	2	35	1.57
47490938--47490979	20	2.1	20	100	0	84	19	0	21	59	1.38
47493193--47493238	20	2.3	20	100	0	92	21	43	26	8	1.81
47495193--47495220	14	2.0	14	100	0	56	42	0	35	21	1.53
47497743--47497963	109	2.0	109	93	6	376	23	28	20	27	1.99
47497751--47498079	78	4.4	73	74	15	237	24	28	20	26	1.99
47497751--47498026	40	7.3	38	74	12	205	24	28	21	26	1.99
47498011--47498088	40	1.9	41	82	10	97	26	28	20	24	1.99
47505465--47505688	40	5.7	39	80	7	211	25	28	21	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47505465--47505688	79	2.8	78	78	9	204	25	28	21	25	1.99
47505428--47505688	40	6.6	37	77	10	179	24	27	21	26	1.99
47505620--47505697	40	1.9	41	82	10	97	26	28	20	24	1.99
47505817--47505846	14	2.2	13	94	5	51	36	16	10	36	1.82
47507186--47507326	55	2.6	54	81	4	140	27	31	25	14	1.95
47509788--47509812	13	1.9	13	100	0	50	16	20	16	48	1.82
47527283--47527765	47	10.3	47	90	0	750	27	28	8	35	1.87
47527687--47527762	22	3.3	22	66	16	64	26	30	10	32	1.90
47533751--47533802	21	2.4	22	78	9	54	61	5	11	21	1.50
47543945--47544122	27	6.6	27	79	3	115	28	28	16	26	1.97
47543945--47544122	54	3.3	55	80	10	204	28	28	16	26	1.97
47543966--47544121	82	1.9	81	85	3	215	28	28	16	26	1.97
47551842--47552019	27	6.6	27	79	3	115	28	28	16	26	1.97
47551842--47552019	54	3.3	55	80	10	204	28	28	16	26	1.97
47551863--47552018	82	1.9	81	85	3	215	28	28	16	26	1.97
47558715--47558877	79	2.0	81	94	5	287	26	30	12	30	1.93
47559499--47559539	22	1.9	22	90	5	66	48	26	4	19	1.69
47559742--47559872	27	4.9	27	81	10	119	37	20	22	19	1.94
47559760--47559871	54	2.1	53	83	8	138	38	22	20	18	1.93
47561435--47561538	25	4.2	26	80	9	119	36	23	7	32	1.83
47561681--47561760	39	2.1	39	100	0	160	31	20	7	41	1.80
47563086--47563148	25	2.5	25	78	0	72	28	17	23	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47563121--47563177	29	2.0	29	82	6	71	31	19	19	29	1.96
47563093--47563192	25	3.8	25	71	14	76	30	22	20	28	1.98
47563150--47563203	25	2.2	25	83	6	65	31	24	18	25	1.97
47563096--47563202	54	2.0	54	84	0	142	31	20	19	28	1.97
47564323--47564361	20	2.0	20	85	10	53	15	5	28	51	1.64
47565509--47565550	18	2.3	18	83	0	57	40	16	7	35	1.76
47566853--47566934	42	1.9	42	87	2	119	32	26	17	23	1.96
47566820--47566986	44	3.9	43	75	12	146	31	26	16	25	1.97
47583749--47583831	42	2.0	42	95	0	148	32	10	27	28	1.91
47590087--47590145	30	2.0	30	93	0	100	33	13	27	25	1.93
47592124--47592246	39	3.2	39	79	0	147	33	13	28	25	1.93
47600753--47600840	18	4.9	18	98	0	158	30	17	10	42	1.82
47602530--47602562	14	2.3	15	94	5	59	18	9	15	57	1.63
47605900--47605929	15	2.1	15	93	6	53	30	6	26	36	1.82
47606114--47606174	31	2.0	31	83	6	79	54	0	6	39	1.27
47608717--47608835	38	3.1	37	80	11	125	29	23	23	23	1.99
47611240--47611452	43	5.0	43	79	4	209	28	19	28	24	1.98
47611277--47611435	85	1.9	85	92	2	266	27	19	27	25	1.99
47611299--47611479	43	4.3	42	75	6	107	28	19	27	24	1.98
47618989--47619212	40	5.6	40	85	7	278	24	22	27	25	2.00
47618988--47619245	119	2.2	119	81	6	292	25	22	26	25	2.00
47628023--47628074	23	2.3	24	84	15	67	21	9	3	65	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47628078--47628110	14	2.4	14	90	10	50	33	0	0	66	0.92
47630994--47631139	74	2.0	75	87	4	215	46	9	11	32	1.73
47631143--47631661	137	3.8	137	87	3	695	42	7	6	43	1.59
47634732--47634903	40	4.3	40	96	2	303	27	27	20	24	1.99
47634732--47634956	80	2.8	80	87	3	294	27	27	20	24	1.99
47634732--47634956	120	1.9	119	83	6	294	27	27	20	24	1.99
47638198--47638381	78	2.3	81	86	6	252	26	27	22	23	2.00
47638179--47638381	40	5.1	40	85	7	254	25	27	22	24	2.00
47642745--47642807	31	2.0	31	93	0	108	23	23	15	36	1.94
47642998--47643138	22	6.0	24	86	10	186	29	21	21	27	1.98
47643019--47643138	45	2.6	47	88	10	185	30	20	20	28	1.97
47643188--47643226	20	2.0	20	100	0	78	30	20	12	35	1.90
47643189--47643233	20	2.2	20	92	0	72	31	22	13	33	1.92
47646016--47646063	24	2.0	24	100	0	96	37	45	0	16	1.48
47650029--47650060	13	2.5	13	94	0	55	59	9	0	31	1.29
47651080--47651243	24	6.8	24	85	4	188	29	22	20	28	1.98
47651298--47651364	20	3.3	20	93	0	116	32	20	11	34	1.90
47651298--47651353	11	5.5	11	71	16	57	32	19	12	35	1.89
47657252--47657415	40	4.1	40	94	1	267	26	28	23	21	1.99
47658090--47658132	22	2.0	21	81	4	50	37	18	6	37	1.78
47659204--47659491	144	2.0	144	96	0	531	33	20	14	31	1.92
47662839--47662871	15	2.1	16	88	5	50	69	9	0	21	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47678122--47678165	21	2.1	21	100	0	88	27	18	9	45	1.79
47682211--47682275	29	2.4	27	82	7	69	58	1	9	30	1.39
47684378--47684881	133	3.8	132	88	2	724	29	24	17	28	1.97
47684304--47684881	265	2.2	266	88	4	847	30	23	17	28	1.97
47684773--47684973	88	2.3	88	81	4	262	31	22	18	27	1.97
47684650--47685089	221	2.0	220	91	1	711	29	23	18	28	1.98
47684949--47685145	45	4.4	44	67	11	105	25	27	16	29	1.97
47684874--47685161	133	2.2	133	90	0	450	29	25	17	27	1.98
47690688--47690749	30	2.1	30	96	0	115	40	30	17	11	1.85
47691508--47691544	18	2.1	18	89	0	56	62	5	0	32	1.18
47691744--47691808	29	2.4	27	82	7	69	58	1	9	30	1.39
47692192--47692251	3	19.7	3	74	16	52	65	1	5	28	1.23
47693068--47693104	17	2.1	17	90	5	56	70	5	18	5	1.27
47699273--47699309	13	2.8	13	100	0	74	21	40	24	13	1.89
47702190--47702229	9	4.6	9	87	12	57	65	0	0	35	0.93
47702190--47702229	19	2.3	16	87	12	53	65	0	0	35	0.93
47708059--47708263	53	3.8	53	75	3	194	37	16	24	21	1.94
47715415--47715560	40	3.7	40	88	5	197	26	27	21	24	2.00
47722915--47722954	19	2.2	19	86	8	57	35	7	0	57	1.27
47723002--47723038	14	2.7	14	80	19	51	35	0	5	59	1.20
47723216--47723310	33	3.0	31	80	19	92	34	3	0	62	1.11
47723171--47723297	16	7.4	16	69	17	78	35	4	0	59	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47723218--47723302	41	2.0	42	80	14	97	36	2	0	61	1.09
47723496--47723546	12	4.3	12	75	20	54	35	1	0	62	1.06
47723479--47723549	24	3.0	22	80	15	63	33	4	0	61	1.15
47723473--47723546	29	2.6	27	82	10	76	36	4	0	59	1.16
47723502--47723570	30	2.5	26	82	17	77	33	4	1	60	1.25
47723599--47723658	9	6.7	9	75	11	52	38	6	1	53	1.37
47723704--47723779	13	5.7	13	73	17	59	40	3	1	53	1.27
47723704--47723772	2	37.5	2	71	16	51	40	2	1	55	1.24
47723704--47723773	15	4.9	15	74	13	58	40	4	1	54	1.29
47723835--47724026	23	8.2	23	63	24	64	35	8	1	55	1.37

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325