Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  140  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43897870--43898052
40
4.6
40
79
6
178
24
26
22
26
2.00
43898358--43898437
29
2.7
30
86
3
108
27
32
15
25
1.95
43898419--43898567
43
3.4
43
94
3
262
26
35
15
22
1.94
43900423--43900501
37
2.1
37
88
4
115
25
30
18
25
1.98
43900618--43901043
47
9.1
47
93
0
683
28
29
9
32
1.88
43904419--43904603
79
2.3
81
83
7
227
24
22
27
24
2.00
43904420--43904603
40
4.6
40
82
9
207
25
22
27
24
2.00
43904472--43904626
79
2.0
79
83
7
199
26
21
27
25
1.99
43916529--43916594
34
1.9
35
84
9
91
43
10
25
19
1.83
43919308--43919564
47
5.5
47
78
9
222
23
29
19
28
1.98
43919436--43919608
46
3.8
45
78
12
165
23
28
19
28
1.98
43924316--43924341
3
8.7
3
100
0
52
65
0
34
0
0.93
43926890--43927031
40
3.5
40
90
0
194
33
28
14
23
1.94
43962894--43962940
14
3.5
14
72
21
55
68
0
27
4
1.08
43964561--43964637
39
2.0
39
94
5
138
27
16
10
45
1.80
43971339--43971401
30
2.1
30
93
0
108
25
3
14
57
1.52
43973441--43973508
33
2.1
33
100
0
136
32
17
20
29
1.96
43977596--43977677
40
2.0
40
100
0
164
14
24
23
37
1.92
43979759--43979818
24
2.5
24
83
5
68
28
3
6
61
1.37
43982313--43982346
9
3.8
9
88
0
50
32
8
0
58
1.29
43982454--43982488
3
11.7
3
87
0
52
31
2
0
65
1.07
43982646--43982693
24
2.1
22
84
7
60
22
10
10
56
1.63
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43984903--43984984
3
27.7
3
78
9
80
32
3
1
62
1.21
43985280--43985327
24
2.1
22
84
7
60
22
8
8
60
1.52
43998544--43998836
44
6.6
44
76
6
182
33
17
20
29
1.95
43998549--43998799
88
2.8
87
73
11
233
32
17
20
29
1.95
44000484--44000521
4
9.8
4
82
5
51
18
0
5
76
0.97
44007707--44007750
22
2.0
22
100
0
88
27
22
9
40
1.84
44009378--44009416
18
2.2
18
86
9
53
76
2
0
20
0.90
44021927--44022093
47
3.6
47
88
0
235
31
8
31
28
1.87
44025904--44026123
81
2.7
79
80
8
228
43
10
14
32
1.78
44025968--44026449
87
5.6
86
78
6
433
43
9
14
33
1.77
44026682--44026725
22
2.0
23
86
4
63
65
2
0
31
1.05
44026681--44026734
22
2.6
21
75
11
58
66
1
0
31
1.02
44028903--44029087
79
2.3
81
84
7
236
24
22
27
25
2.00
44028904--44029087
40
4.6
40
83
9
216
24
22
27
25
2.00
44028956--44029110
79
2.0
79
84
7
208
25
21
27
25
1.99
44031548--44031581
17
2.0
17
88
11
52
52
14
2
29
1.56
44033503--44033531
14
2.1
14
100
0
58
20
6
13
58
1.58
44040123--44040233
34
3.3
34
78
5
125
34
21
7
36
1.81
44047310--44047420
34
3.3
34
87
0
159
36
21
6
36
1.79
44048655--44048715
30
2.0
30
100
0
122
47
19
9
22
1.79
44049920--44050006
42
2.1
41
85
6
113
24
18
31
26
1.98
44049920--44050043
41
3.0
41
81
5
99
24
18
29
27
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44060681--44060737
21
2.7
21
73
10
62
29
28
0
42
1.56
44061270--44061302
15
2.2
15
100
0
66
24
18
0
57
1.40
44063033--44063204
93
1.8
93
96
0
317
27
31
20
19
1.97
44063026--44063201
46
3.8
46
78
10
214
28
31
19
19
1.97
44073391--44073486
40
2.4
40
81
10
115
32
14
23
29
1.94
44074195--44074223
12
2.4
12
100
0
58
13
6
27
51
1.66
44074831--44074867
14
2.5
16
83
16
53
27
0
24
48
1.51
44078344--44078423
38
2.1
38
90
0
124
20
22
28
28
1.98
44078395--44078583
43
4.4
43
89
4
276
14
23
32
29
1.94
44083321--44083453
69
1.9
70
90
1
214
32
14
16
36
1.89
44084840--44085338
47
10.6
47
95
0
872
32
8
30
29
1.86
44091693--44091739
19
2.4
19
89
3
76
34
21
4
40
1.73
44091915--44092017
41
2.4
43
76
9
122
29
19
19
32
1.96
44098639--44098717
41
1.9
42
84
2
106
30
24
16
29
1.96
44110400--44110549
43
3.5
43
82
9
166
32
24
15
28
1.95
44114843--44114955
31
3.6
31
73
10
104
53
11
12
23
1.70
44115337--44115401
19
3.4
19
73
14
62
61
4
1
32
1.26
44115355--44115484
28
4.6
28
73
14
97
60
6
2
31
1.34
44115355--44115484
29
4.6
27
72
15
102
60
6
2
31
1.34
44115456--44115505
10
5.0
10
80
7
57
60
4
2
34
1.27
44115453--44115505
20
2.7
20
82
5
63
62
3
1
32
1.24
44115880--44116091
10
22.7
9
70
13
110
31
2
5
59
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44116013--44116095
18
4.5
18
76
11
71
34
2
6
56
1.37
44116240--44116439
9
21.8
9
71
16
110
32
1
4
62
1.22
44116701--44116749
22
2.3
22
76
16
57
69
0
2
28
1.00
44116845--44116889
15
2.9
15
86
3
54
31
2
0
66
1.04
44127664--44127719
26
2.2
26
93
0
94
25
28
8
37
1.86
44131986--44132027
20
2.2
19
87
12
59
16
21
4
57
1.58
44134288--44134394
27
3.9
27
84
9
137
37
22
23
16
1.94
44134285--44134394
54
2.0
54
87
3
159
38
21
23
16
1.93
44135812--44135862
24
2.1
24
92
0
84
21
33
3
41
1.72
44143009--44143452
95
4.7
95
81
2
462
31
18
12
37
1.88
44143009--44143452
190
2.3
189
82
1
530
31
18
12
37
1.88
44149995--44150032
14
2.7
14
91
0
58
36
18
7
36
1.80
44154154--44154197
23
1.9
23
86
9
63
20
4
47
27
1.69
44160916--44160996
31
2.6
31
82
0
99
23
32
34
9
1.88
44161948--44162073
55
2.3
55
82
6
148
24
30
23
21
1.99
44163363--44163405
21
2.0
21
95
0
77
18
20
23
37
1.94
44164136--44164330
49
3.9
49
85
2
264
26
18
26
28
1.98
44164138--44164330
100
1.9
100
95
0
350
26
19
25
28
1.99
44170601--44170826
40
5.7
40
89
5
280
26
26
21
25
2.00
44177294--44177542
40
6.2
40
85
4
292
26
26
20
26
1.99
44178704--44178952
47
5.5
44
72
11
164
24
27
17
29
1.97
44178703--44178999
94
3.2
90
82
6
362
24
26
18
30
1.98
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44180271--44180309
18
2.1
19
85
4
53
33
15
17
33
1.92
44182564--44182588
6
4.2
6
100
0
50
68
16
0
16
1.22
44186043--44186145
34
3.0
35
76
11
104
20
24
24
31
1.98
44186000--44186209
69
2.9
71
72
10
174
23
21
21
32
1.98
44187754--44187807
15
3.4
16
82
12
58
38
1
0
59
1.08
44188203--44188242
8
4.9
8
81
6
53
0
20
0
80
0.72
44188203--44188282
17
5.0
17
75
11
64
2
21
0
76
0.91
44188576--44188617
13
2.9
14
80
13
50
54
0
0
45
0.99
44188580--44188616
16
2.3
16
86
13
58
59
0
0
40
0.97
44188652--44188701
15
3.1
16
74
20
50
54
0
0
46
1.00
44188943--44188997
27
2.1
26
86
10
76
54
3
3
38
1.36
44195701--44195851
27
5.6
27
81
7
171
29
28
15
26
1.96
44199557--44199638
36
2.3
36
84
0
110
39
15
9
35
1.81
44199556--44199638
18
4.6
18
83
0
94
39
15
9
34
1.80
44199782--44199882
44
2.3
44
81
6
107
33
21
22
21
1.97
44200546--44200586
12
3.5
11
90
6
55
26
17
0
56
1.41
44201230--44201266
19
2.0
18
89
5
56
51
2
0
45
1.15
44202354--44202391
18
2.2
17
86
9
51
21
7
2
68
1.28
44206242--44206294
25
2.1
25
100
0
106
30
11
16
41
1.84
44206942--44206981
5
8.0
5
100
0
80
80
0
0
20
0.72
44213275--44213329
25
2.2
25
86
0
74
45
3
27
23
1.69
44213445--44213535
40
2.2
43
84
9
118
25
19
13
41
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
44219156--44219187
16
2.0
16
100
0
64
43
12
6
37
1.68
44222439--44222612
48
3.6
48
88
0
258
26
15
29
28
1.96
44222582--44222644
31
2.0
31
90
0
99
25
17
28
28
1.97
44238476--44238500
7
3.6
7
100
0
50
44
40
0
16
1.47
44237918--44239100
610
1.9
609
97
0
2231
31
17
14
37
1.89
44246193--44246282
32
2.8
32
93
0
144
26
11
24
37
1.89
44252594--44252752
32
4.9
32
89
2
212
30
10
22
36
1.88
44258584--44258754
93
1.8
93
92
0
288
21
22
28
28
1.99
44258588--44258759
46
3.7
46
77
13
190
21
22
27
28
1.99
44261528--44261851
48
6.8
48
85
1
364
27
16
28
27
1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325