genome.fa.s5.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  99  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32220844--32221386	170	3.2	170	85	5	714	31	17	23	27	1.97
32220879--32221567	170	3.9	176	80	6	681	31	16	23	28	1.96
32220845--32221611	346	2.2	345	82	5	899	31	16	23	27	1.96
32231227--32231321	25	3.8	25	87	0	136	26	23	24	26	2.00
32231524--32231766	27	9.0	27	84	1	281	25	20	18	35	1.95
32231525--32231766	54	4.5	54	85	1	315	26	20	18	35	1.95
32231525--32231767	81	3.0	81	83	0	324	26	20	18	35	1.95
32231729--32231911	27	6.8	26	76	8	91	30	12	19	38	1.88
32231795--32231975	81	2.2	81	84	2	229	30	8	20	39	1.83
32231786--32231964	27	6.6	27	80	2	189	30	8	19	41	1.82
32231956--32232247	27	10.8	27	85	0	341	38	8	23	30	1.84
32231846--32232175	81	4.1	81	81	2	243	37	8	21	32	1.83
32234166--32234215	24	2.1	24	100	0	100	24	8	8	60	1.52
32236161--32236219	27	2.2	27	87	0	82	33	20	10	35	1.86
32236224--32236286	27	2.3	27	88	0	99	31	19	9	39	1.83
32236172--32236291	65	1.9	63	85	3	168	31	19	10	39	1.84
32236278--32236484	80	2.6	81	85	3	258	41	22	8	28	1.82
32236278--32236596	27	11.8	27	79	4	266	41	20	8	29	1.81
32236627--32236718	27	3.4	27	87	3	123	33	19	26	20	1.96
32237527--32237596	25	2.8	25	84	4	79	30	21	21	27	1.98
32237744--32237835	42	2.2	42	92	0	148	29	14	21	34	1.93
32241264--32241425	60	2.6	64	84	8	208	42	18	26	12	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32241407--32241440	17	1.9	18	88	5	52	32	14	35	17	1.91
32242495--32243211	170	4.2	170	85	4	859	31	17	23	27	1.97
32246543--32246590	25	1.9	25	86	0	69	66	6	4	22	1.32
32248835--32248882	21	2.3	22	78	10	55	14	25	37	22	1.92
32251615--32251736	39	3.1	39	95	0	226	24	23	30	21	1.99
32251615--32251764	78	1.9	78	89	2	230	24	24	29	22	1.99
32255558--32255642	42	2.0	43	83	2	109	11	28	36	23	1.90
32255582--32255642	21	2.9	21	78	7	70	13	27	36	22	1.92
32259067--32259141	30	2.5	30	88	0	105	29	20	21	29	1.98
32259090--32259255	66	2.5	66	83	3	210	27	16	25	30	1.97
32260231--32260278	21	2.2	22	81	7	62	41	2	0	56	1.11
32260260--32260296	17	2.1	18	85	14	51	40	0	0	59	0.97
32271351--32271458	26	4.2	26	93	0	189	32	7	24	36	1.83
32272903--32272978	26	2.8	26	86	4	98	35	19	11	32	1.88
32273082--32273222	27	5.2	27	82	8	171	19	23	21	35	1.96
32273082--32273222	54	2.6	54	93	2	230	19	23	21	35	1.96
32273082--32273240	81	2.0	80	82	8	198	20	23	20	35	1.96
32275188--32275215	12	2.3	12	100	0	56	32	14	10	42	1.80
32277314--32277435	42	2.9	42	85	1	147	15	22	18	44	1.87
32277362--32277430	21	3.3	21	72	0	66	14	24	20	40	1.90
32281587--32281686	52	1.9	52	93	0	173	28	15	10	47	1.77
32282027--32282094	34	2.0	34	97	0	127	41	13	2	42	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32283001--32283033	5	6.6	5	100	0	66	18	0	0	81	0.68
32283432--32283456	13	1.9	13	100	0	50	28	0	8	64	1.22
32285669--32285730	31	2.0	31	96	0	115	25	30	22	20	1.98
32287524--32287648	61	2.0	61	92	0	205	38	18	18	24	1.93
32291716--32291750	4	8.8	4	87	0	52	28	2	20	48	1.63
32291752--32291796	10	4.3	10	83	10	63	2	6	4	86	0.76
32291746--32291790	22	2.0	22	95	0	81	6	4	6	82	0.95
32294336--32294814	248	1.9	247	92	0	805	34	6	40	18	1.77
32304985--32305016	2	16.0	2	100	0	64	0	0	50	50	1.00
32305172--32305228	15	3.9	15	88	2	89	35	0	12	52	1.39
32305168--32305226	30	2.0	28	93	6	100	32	0	11	55	1.36
32305784--32305823	19	2.2	18	86	13	55	47	0	22	30	1.52
32310483--32310529	13	3.7	13	75	13	53	72	6	14	6	1.25
32311497--32311553	15	3.9	15	83	2	80	33	0	14	52	1.41
32312108--32312148	19	2.2	19	87	12	59	46	0	24	29	1.53
32327212--32327264	26	2.0	26	82	13	65	26	11	22	39	1.88
32327392--32327438	19	2.5	19	100	0	94	19	31	12	36	1.89
32328765--32328872	26	4.2	26	93	0	189	36	24	7	32	1.83
32335839--32335946	26	4.2	26	91	0	180	37	24	6	32	1.81
32353335--32353449	29	4.0	29	79	1	133	25	31	14	28	1.95
32353337--32353449	58	2.0	57	85	5	156	24	30	15	29	1.95
32358587--32358646	21	2.8	20	75	18	59	60	3	5	31	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32358596--32358711	7	15.9	7	68	19	60	56	0	6	36	1.30
32358599--32358711	12	9.4	12	73	17	67	56	0	6	36	1.30
32358596--32358711	10	11.6	10	68	22	75	56	0	6	36	1.30
32360254--32360550	44	6.8	44	82	1	353	28	27	13	29	1.94
32360522--32360578	28	2.0	28	100	0	114	31	26	14	28	1.94
32360482--32360622	72	2.0	72	91	0	228	28	28	14	28	1.96
32360550--32360924	44	8.5	44	84	1	412	29	26	15	28	1.96
32360439--32360666	116	2.0	116	91	0	375	27	28	14	28	1.96
32360391--32360697	160	1.9	160	87	1	454	28	28	14	28	1.95
32360354--32360750	204	1.9	205	87	1	582	28	27	13	30	1.94
32360896--32361013	28	4.0	28	75	21	107	34	25	16	23	1.95
32360889--32361013	63	2.0	61	86	6	171	32	25	16	25	1.96
32367202--32367349	76	1.9	76	97	0	278	27	14	17	41	1.88
32372945--32372995	16	3.2	16	81	13	52	68	3	1	25	1.17
32373333--32373372	10	3.8	10	83	9	53	60	0	2	37	1.11
32373302--32373370	25	2.8	25	82	10	88	56	0	5	37	1.23
32375206--32375317	29	3.9	28	72	10	82	25	29	16	29	1.96
32375542--32375594	24	2.2	24	86	0	70	13	22	13	50	1.75
32392292--32392424	18	7.5	18	88	5	200	39	11	12	36	1.79
32392283--32392424	35	4.0	35	95	2	239	38	10	13	37	1.79
32392729--32392762	12	2.9	11	87	12	50	35	0	0	64	0.94
32392730--32392838	21	5.3	21	65	20	61	37	2	0	58	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32392727--32392757	16	2.0	16	93	6	55	35	0	0	64	0.94
32392778--32392884	7	15.7	7	68	20	50	39	4	0	56	1.20
32395923--32395954	14	2.1	16	88	11	50	21	15	12	50	1.77
32398537--32398593	14	3.9	14	74	17	53	84	0	14	1	0.71
32398536--32398596	21	2.9	21	85	7	79	85	0	13	1	0.68
32398539--32398597	22	2.7	22	87	7	84	83	0	13	3	0.78
32398539--32398603	21	3.0	21	82	6	76	78	0	18	3	0.88
32399566--32399652	44	2.0	44	88	4	131	31	16	26	26	1.96
32399638--32400118	119	4.0	119	94	0	800	34	18	18	29	1.94
32400042--32400394	83	4.2	83	92	0	571	31	20	20	27	1.98
32400788--32400937	17	8.5	17	88	5	219	39	11	12	36	1.79
32400779--32400937	35	4.5	35	92	4	239	38	10	13	37	1.79
32400781--32400937	52	3.0	52	90	6	232	38	10	13	36	1.80
32401242--32401275	12	2.9	11	87	12	50	35	0	0	64	0.94
32401243--32401348	21	5.3	21	68	19	59	36	2	0	59	1.19
32401240--32401270	16	2.0	16	93	6	55	35	0	0	64	0.94
32401727--32401776	3	16.3	3	95	4	91	34	0	0	66	0.92
32405556--32405596	10	4.1	10	87	0	64	65	0	12	21	1.25
32405583--32405627	22	2.0	22	91	0	72	60	8	17	13	1.58
32406239--32406286	24	1.9	25	87	8	71	0	22	0	77	0.78
32407580--32407643	20	3.5	19	81	14	64	76	0	3	20	0.92
32411374--32411454	10	7.9	10	76	15	85	65	2	12	19	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32411415--32411459	22	2.0	22	100	0	90	60	4	17	17	1.53
32420663--32420770	26	4.2	26	92	0	171	36	23	7	33	1.83
32420663--32420770	52	2.1	52	94	3	191	36	23	7	33	1.83
32430567--32430662	23	4.1	23	71	7	77	43	18	2	35	1.62
32431386--32431600	113	1.9	113	87	3	317	38	21	9	30	1.85
32431428--32431607	57	3.2	57	67	16	138	38	21	9	30	1.85
32432036--32432064	13	2.1	14	93	6	51	0	13	3	82	0.79
32433569--32433601	17	1.9	17	93	0	57	57	3	0	39	1.14
32439776--32439813	16	2.4	16	100	0	76	50	7	15	26	1.72
32445551--32445672	44	2.8	41	76	12	120	25	18	26	30	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325