genome.fa.s5.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  142  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44573896--44574000	17	6.2	16	70	13	68	49	13	9	27	1.73
44574035--44574235	35	5.7	35	71	9	113	42	11	14	31	1.81
44574067--44574240	89	2.0	89	80	3	199	41	11	14	32	1.82
44574035--44574560	18	28.7	18	66	16	174	44	10	12	31	1.77
44574318--44574356	21	1.9	21	94	5	71	41	10	12	35	1.77
44574319--44574374	21	2.8	20	83	5	67	46	8	10	33	1.70
44574333--44574378	19	2.5	19	82	10	51	45	6	13	34	1.69
44574450--44574490	21	2.0	21	85	0	55	60	12	2	24	1.43
44574422--44574493	37	1.9	37	83	8	92	55	11	4	29	1.53
44574471--44574567	17	5.6	17	76	9	88	49	13	11	25	1.75
44574523--44574574	18	2.9	19	80	11	56	46	11	11	30	1.76
44574553--44574611	21	2.8	20	77	12	55	42	10	8	38	1.69
44575181--44575253	15	4.7	15	82	16	78	0	19	0	80	0.71
44575181--44575253	24	3.1	23	88	7	94	0	19	0	80	0.71
44575451--44575507	20	2.9	19	80	14	62	8	22	38	29	1.85
44575517--44575579	6	10.3	6	76	17	51	0	22	0	77	0.76
44575517--44575595	13	6.1	13	80	10	63	0	25	0	74	0.82
44575535--44575596	3	19.0	3	84	12	70	0	32	0	67	0.91
44575525--44575596	10	7.6	10	77	10	71	0	29	0	70	0.87
44575538--44575592	19	3.1	18	84	7	76	0	30	0	69	0.89
44575534--44575596	22	2.7	23	85	9	83	0	31	0	68	0.90
44575963--44576079	30	3.9	29	79	11	103	45	3	21	29	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44575978--44576079	30	3.4	30	87	2	143	45	3	21	29	1.70
44575944--44576079	60	2.3	59	83	5	159	42	3	22	31	1.71
44576481--44576542	22	2.9	22	88	4	83	8	27	24	40	1.83
44577626--44577679	27	2.0	28	85	10	76	44	5	1	48	1.37
44596336--44596369	13	2.8	12	86	8	50	32	11	0	55	1.36
44596333--44596369	12	3.0	12	84	7	56	32	10	0	56	1.34
44596818--44596889	16	4.5	16	82	0	81	27	25	4	43	1.73
44596820--44596889	32	2.2	32	92	0	113	28	24	4	42	1.73
44600573--44600706	42	3.1	42	75	12	130	33	25	17	23	1.96
44609683--44609721	14	2.8	14	92	0	60	38	10	20	30	1.86
44609985--44610158	84	2.0	86	88	6	262	45	10	9	33	1.72
44610269--44610320	15	3.2	15	73	19	50	44	0	1	53	1.11
44610401--44610456	22	2.6	22	83	5	62	51	0	0	48	1.00
44617161--44617333	43	4.1	42	77	8	154	27	15	24	32	1.95
44619288--44619377	20	4.5	20	76	5	74	42	12	14	31	1.82
44621653--44621716	32	2.0	33	82	14	80	28	6	9	56	1.55
44624590--44624767	27	6.6	27	83	3	196	26	14	29	29	1.95
44624590--44624767	54	3.3	55	84	4	236	26	14	29	29	1.95
44631315--44631420	54	2.0	54	83	7	137	35	16	15	33	1.89
44637348--44637493	9	16.8	9	74	17	62	9	8	80	0	0.93
44637375--44637517	20	7.1	20	69	18	84	6	11	81	0	0.92
44637348--44637514	52	3.1	51	79	18	164	8	10	80	0	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44637348--44637457	51	2.1	52	86	8	154	8	10	81	0	0.86
44637351--44637513	51	3.1	50	79	15	150	8	10	80	0	0.94
44639694--44639791	26	3.7	26	81	9	74	28	30	16	24	1.96
44812427--44812592	90	1.8	92	90	5	275	21	20	30	27	1.98
44812433--44812602	45	3.7	46	75	17	176	21	19	30	28	1.97
44819017--44819086	27	2.6	27	95	2	113	31	28	12	27	1.93
44819017--44819114	28	3.5	28	90	2	135	31	28	13	26	1.94
44824756--44824834	37	2.1	37	90	0	122	25	31	18	24	1.98
44824953--44825481	47	11.4	47	93	4	880	29	29	8	32	1.87
44824953--44825481	93	5.7	94	93	3	880	29	29	8	32	1.87
44828286--44828480	39	4.9	40	87	2	259	25	28	22	23	1.99
44828299--44828480	79	2.3	79	86	1	249	24	28	23	23	1.99
44828299--44828559	40	6.6	40	82	6	282	24	28	22	24	2.00
44828864--44828942	29	2.7	29	86	5	106	27	32	15	24	1.95
44830846--44830923	36	2.1	37	90	2	122	25	30	19	24	1.98
44831096--44831141	23	2.0	23	100	0	92	34	30	0	34	1.58
44831119--44831510	47	8.2	47	93	3	579	30	29	8	31	1.88
44834204--44834249	24	1.9	24	100	0	92	30	17	26	26	1.97
44834204--44834255	24	2.2	24	92	0	86	26	17	25	30	1.97
44839763--44839831	26	2.5	28	71	23	67	50	2	1	44	1.25
44845184--44845356	93	1.9	93	91	2	285	27	30	21	20	1.98
44845177--44845352	46	3.8	46	80	11	198	28	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44845185--44845371	46	4.0	46	73	13	134	28	29	20	20	1.98
44847733--44847820	29	3.0	29	80	8	97	56	15	17	10	1.66
44847733--44847811	15	5.4	15	77	10	83	58	13	17	10	1.63
44847744--44847820	15	5.2	15	75	9	77	55	15	16	11	1.68
44850724--44850896	93	1.9	93	95	0	310	27	30	21	20	1.98
44850717--44850892	46	3.8	46	79	12	207	28	30	21	19	1.98
44855310--44855535	50	4.5	49	77	8	213	30	26	18	25	1.98
44862306--44862534	50	4.6	50	79	8	223	31	26	17	24	1.97
44869224--44869461	50	4.8	50	82	4	266	30	27	17	23	1.97
44871622--44871672	6	7.8	6	79	16	57	78	3	0	17	0.90
44881028--44881190	85	1.9	85	82	5	204	27	20	23	28	1.99
44882847--44882882	18	2.0	18	88	0	54	69	2	8	19	1.27
44889302--44889548	50	4.9	50	83	2	298	27	17	25	29	1.97
44889256--44889548	100	2.9	100	84	2	336	27	17	24	30	1.97
44889751--44889785	17	2.0	18	88	5	54	54	0	11	34	1.37
44890108--44890435	180	1.8	178	87	3	489	38	10	18	32	1.84
44900819--44900871	24	2.2	24	83	9	65	16	24	20	37	1.93
44905325--44905549	40	5.7	40	86	5	296	24	22	28	25	2.00
44905325--44905582	119	2.2	119	81	6	283	25	21	27	24	1.99
44909371--44909419	25	2.0	25	91	0	80	20	26	20	32	1.97
44909373--44909440	25	2.7	25	81	6	75	20	26	23	29	1.99
44920485--44920570	24	3.6	23	77	10	84	38	23	23	15	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44920610--44920681	26	2.8	26	74	2	74	44	23	15	16	1.86
44928541--44928680	25	5.6	25	66	14	74	19	27	18	34	1.95
44933724--44933760	17	2.2	17	90	0	56	48	0	2	48	1.15
44938177--44938264	45	2.0	45	93	0	149	25	13	25	36	1.92
44940590--44940689	27	3.7	27	87	2	112	26	26	14	34	1.94
44944955--44945052	31	3.1	30	68	25	85	17	2	33	46	1.59
44946081--44946196	58	2.0	58	100	0	232	32	12	13	41	1.82
44947705--44947733	2	14.5	2	100	0	58	48	0	0	51	1.00
44948382--44948420	20	1.9	21	84	5	53	35	7	0	56	1.28
44950512--44950583	35	2.1	35	91	0	117	20	12	16	50	1.78
44964301--44964346	22	2.1	22	87	0	65	26	19	4	50	1.66
44968107--44968470	46	8.0	47	90	3	460	20	24	15	38	1.92
44968107--44968470	92	4.0	92	89	2	509	20	24	15	38	1.92
44968107--44968470	182	2.0	184	86	2	509	20	24	15	38	1.92
44968303--44968372	21	3.2	21	64	28	56	21	25	15	37	1.93
44968245--44968501	136	1.9	133	84	7	347	23	27	15	33	1.95
44970613--44970676	20	3.0	22	73	17	64	57	6	0	35	1.24
44981189--44981267	25	3.3	25	66	16	76	34	5	29	31	1.79
44981164--44981458	47	6.3	47	92	0	482	33	8	29	28	1.86
44989361--44989399	20	2.0	20	85	10	53	30	15	7	46	1.74
44994587--44994640	27	2.0	28	89	10	85	74	5	1	18	1.11
44994653--44994701	19	2.6	18	87	9	62	55	4	0	40	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45009775--45009822	25	1.9	24	84	16	62	43	18	4	33	1.69
45010050--45010138	23	3.9	23	77	12	103	39	21	23	15	1.92
45018328--45018458	43	3.0	42	81	8	140	29	15	22	33	1.94
45020013--45020042	12	2.5	12	94	0	51	26	53	20	0	1.46
45031675--45031723	24	2.0	23	84	11	62	71	4	20	4	1.19
45035205--45035231	13	2.1	13	100	0	54	22	40	7	29	1.81
45043958--45044000	19	2.3	19	81	14	54	44	0	23	32	1.54
45044429--45044700	46	5.8	46	75	11	207	27	19	29	23	1.98
45044568--45044699	49	2.7	50	76	8	144	26	21	31	21	1.98
45054972--45055100	46	2.8	46	83	7	145	27	17	29	24	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325