genome.fa.s5.2.7.7.80.10.50.1000.197.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  197  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61909740--61909782	18	2.4	18	92	0	68	39	20	9	30	1.84
61913928--61914033	27	3.9	27	83	4	133	27	20	17	33	1.96
61913927--61914060	54	2.5	52	76	13	119	27	20	17	34	1.95
61927300--61927373	29	2.6	29	86	4	96	25	31	16	27	1.96
61930248--61930485	49	4.8	50	79	2	237	26	15	26	31	1.96
61935475--61935669	49	3.9	49	79	2	219	29	19	23	27	1.98
61935477--61935669	100	1.9	100	90	0	305	29	19	22	27	1.98
61940027--61940079	27	2.0	27	96	0	97	33	15	18	32	1.92
61952341--61952367	8	3.4	8	100	0	54	25	0	0	74	0.83
61953241--61953358	41	2.9	41	89	0	164	36	24	19	19	1.95
61953346--61953575	41	5.6	41	89	0	289	24	18	27	29	1.98
61953886--61953935	18	2.7	18	84	9	66	46	4	2	48	1.32
61954358--61954390	17	1.9	17	93	0	57	57	0	9	33	1.30
61958229--61958272	22	2.0	22	82	8	54	36	0	2	61	1.09
61959324--61959367	22	2.0	22	82	8	54	36	0	2	61	1.09
61957934--61965516	369	20.6	371	96	3	14097	36	14	10	39	1.80
61961161--61961204	22	2.0	22	82	8	54	36	0	2	61	1.09
61961531--61961574	22	2.0	21	86	8	61	34	0	2	63	1.07
61962270--61962318	23	2.2	22	82	10	55	34	0	2	63	1.06
61962633--61962677	22	2.0	22	83	8	56	37	0	2	60	1.09
61963001--61963044	22	2.0	22	82	8	54	36	0	2	61	1.09
61964835--61964878	22	2.0	22	82	8	54	36	0	2	61	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61965524--61965568	22	2.0	22	83	8	56	37	0	2	60	1.09
61965517--61972057	372	17.7	372	97	0	12343	35	14	10	39	1.79
61967005--61967048	22	2.0	22	82	8	54	36	0	2	61	1.09
61967748--61967791	22	2.0	22	82	8	54	36	0	2	61	1.09
61965517--61972057	743	8.8	743	97	0	12351	35	14	10	39	1.79
61968489--61968532	22	2.0	22	82	8	54	36	0	2	61	1.09
61969227--61969270	22	2.0	22	82	8	54	36	0	2	61	1.09
61969599--61969642	22	2.0	22	82	8	54	36	0	2	61	1.09
61969971--61970014	22	2.0	22	82	8	54	36	0	2	61	1.09
61971082--61971125	22	2.0	22	82	8	54	36	0	2	61	1.09
61972150--61972217	24	2.8	24	84	8	102	27	19	7	45	1.76
61972394--61972449	15	3.8	15	80	20	73	46	0	0	53	1.00
61972553--61972778	9	24.6	9	76	8	143	47	12	0	38	1.48
61972553--61972778	18	12.3	18	75	9	161	47	12	0	38	1.48
61972581--61972802	114	1.9	114	86	3	313	47	12	0	38	1.48
61977983--61978011	14	2.1	14	93	6	51	34	0	6	58	1.25
61978423--61978463	21	2.0	21	90	0	64	26	17	53	2	1.56
61978838--61979133	43	7.0	42	90	1	425	22	27	20	29	1.99
61978838--61979133	86	3.5	86	91	1	481	22	27	20	29	1.99
61978838--61979133	42	7.0	42	91	1	466	22	27	20	29	1.99
61979630--61979743	60	1.9	60	85	7	160	28	25	18	27	1.98
61979783--61979826	19	2.2	20	84	4	54	34	25	18	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61981771--61981865	25	3.8	25	97	0	172	26	22	25	26	2.00
61983188--61983359	93	1.8	93	93	0	299	28	29	20	21	1.98
61983181--61983356	46	3.8	46	76	12	198	29	28	20	21	1.98
61990295--61990466	93	1.8	93	95	2	310	28	29	20	20	1.98
61990288--61990463	46	3.8	46	79	14	209	29	29	20	20	1.98
61991415--61991519	56	1.9	56	82	9	135	35	20	24	19	1.96
61991440--61991519	27	2.9	27	88	5	106	32	22	25	20	1.98
61991651--61991728	28	2.8	28	100	0	156	32	7	24	35	1.84
61994802--61994973	93	1.8	93	93	2	301	29	29	20	20	1.98
61994795--61994970	46	3.8	47	79	12	211	30	29	19	20	1.97
61994803--61994989	46	4.0	44	73	16	139	29	29	20	20	1.98
61995846--61996116	27	10.0	27	85	0	353	24	19	19	36	1.95
61996024--61996281	27	9.7	27	80	8	133	25	10	21	41	1.85
61996127--61996295	54	3.1	53	77	11	157	27	7	21	42	1.80
61996231--61996657	81	5.3	81	86	0	422	38	8	22	29	1.84
61996274--61996684	27	15.2	27	89	0	588	39	8	23	28	1.84
61999062--61999156	25	3.8	25	91	0	118	26	21	24	28	1.99
61999359--61999736	27	14.0	27	83	2	366	25	19	17	37	1.94
61999361--61999740	81	4.7	81	81	3	415	26	19	17	37	1.93
61999759--61999930	27	6.4	26	77	10	150	29	8	20	41	1.81
61999759--61999944	54	3.5	53	80	7	189	30	8	21	39	1.83
61999925--62000192	27	9.9	27	91	0	428	41	8	21	28	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61999871--62000192	81	4.0	79	84	4	286	39	8	21	31	1.83
62004303--62004474	93	1.8	93	93	2	301	29	29	20	20	1.98
62004296--62004471	46	3.8	46	78	14	200	30	29	19	20	1.97
62011403--62011574	93	1.8	93	95	2	310	28	29	20	20	1.98
62011396--62011571	46	3.8	46	79	14	209	29	29	20	20	1.98
62012522--62012636	55	2.1	56	83	8	146	34	21	24	19	1.96
62012547--62012636	27	3.2	27	85	7	119	32	23	24	20	1.98
62012758--62012835	28	2.8	28	100	0	156	32	7	24	35	1.84
62014596--62014656	23	2.7	23	97	0	113	13	37	11	37	1.80
62014596--62014692	23	4.3	22	84	8	74	16	32	13	37	1.88
62017055--62017130	27	2.8	27	81	0	98	39	21	21	18	1.93
62019934--62020218	49	5.8	49	83	4	351	28	17	24	29	1.97
62019933--62020218	148	1.9	149	88	3	434	28	17	25	29	1.97
62023310--62023366	30	1.9	30	88	0	87	10	10	17	61	1.56
62023305--62023378	15	5.0	15	77	8	71	9	12	16	62	1.54
62025660--62025816	43	3.7	43	79	9	160	26	26	20	26	1.99
62025660--62025816	86	1.8	85	84	4	217	26	26	20	26	1.99
62033119--62033417	47	6.3	47	91	1	413	26	30	10	33	1.90
62037635--62037680	24	1.9	24	82	8	58	26	17	23	32	1.97
62046516--62046648	45	3.0	45	86	2	169	27	26	21	24	1.99
62051284--62051377	42	2.2	43	84	5	120	28	24	18	28	1.98
62052163--62052266	6	16.8	6	69	16	61	48	11	19	21	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62052163--62052244	31	2.6	31	90	0	110	47	13	19	19	1.82
62052175--62052266	25	3.4	25	73	16	85	46	11	20	20	1.82
62052402--62052491	27	3.3	26	83	6	99	36	24	22	16	1.94
62052732--62052772	20	2.0	20	85	0	55	46	31	12	9	1.74
62053053--62053267	27	8.0	27	82	0	250	25	19	19	36	1.94
62053259--62053443	27	6.9	27	80	1	138	33	6	20	39	1.78
62053306--62053493	54	3.5	52	79	7	198	31	7	20	40	1.80
62053298--62053463	81	2.1	80	81	3	190	31	8	19	40	1.82
62053325--62053544	27	8.2	27	81	5	214	30	8	20	40	1.82
62053325--62053523	80	2.5	80	80	2	202	32	8	19	39	1.82
62058255--62058439	79	2.3	81	82	7	218	25	27	23	24	2.00
62058255--62058439	40	4.7	40	81	7	216	25	27	23	24	2.00
62065937--62066121	79	2.3	81	84	7	236	25	27	22	24	2.00
62065937--62066121	40	4.7	40	83	7	234	25	27	22	24	2.00
62067856--62068029	49	3.5	49	83	1	240	26	17	26	29	1.98
62067848--62068029	99	1.8	99	93	0	319	26	18	26	28	1.98
62072381--62072463	27	3.1	25	70	17	60	44	21	13	20	1.85
62072394--62072548	27	5.7	27	81	8	156	41	19	14	24	1.88
62072394--62072548	54	2.9	54	84	0	211	41	19	14	24	1.88
62072395--62072548	81	1.9	81	87	2	229	41	19	14	24	1.89
62078008--62078105	28	3.5	28	73	5	108	27	35	19	17	1.94
62078008--62078134	56	2.3	56	98	0	245	28	33	19	18	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62078035--62078133	28	3.5	28	75	5	119	29	29	20	21	1.98
62078117--62078170	25	2.2	25	93	6	92	27	29	11	31	1.91
62078290--62078432	43	3.3	43	84	0	178	33	31	20	13	1.92
62078421--62078581	40	4.0	40	95	0	277	27	31	22	19	1.98
62090606--62091175	47	11.9	47	93	3	917	32	8	29	29	1.86
62090606--62091175	96	6.0	95	93	2	939	32	8	29	29	1.86
62092557--62092939	40	9.6	40	91	1	516	24	20	28	27	1.99
62095758--62096379	49	12.9	49	94	3	1063	32	8	28	30	1.86
62095758--62096379	96	6.5	97	94	3	1039	32	8	28	30	1.86
62095758--62096379	145	4.3	145	94	2	1087	32	8	28	30	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325