genome.fa.s5.2.7.7.80.10.50.1000.95.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  95  of  325  ( 38985 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31352505--31352538	18	1.9	17	88	5	50	44	2	2	50	1.32
31352915--31352963	18	2.4	22	83	12	61	32	0	2	65	1.04
31353406--31353455	25	2.0	26	84	4	66	58	18	4	20	1.55
31357868--31357919	24	2.2	24	89	0	77	36	3	9	50	1.54
31362267--31362319	24	2.2	24	93	0	88	37	1	9	50	1.46
31362274--31362330	24	2.4	24	88	5	80	36	3	10	49	1.55
31362719--31362762	22	2.0	23	86	13	65	36	20	4	38	1.73
31363070--31363096	13	2.1	13	100	0	54	55	29	0	14	1.40
31365439--31365492	14	3.7	14	76	9	63	33	3	1	61	1.25
31365426--31365499	30	2.5	29	80	6	94	29	4	5	60	1.37
31367431--31367470	21	1.9	21	84	0	53	15	7	7	70	1.33
31367976--31368028	6	8.2	6	78	14	52	18	0	3	77	0.92
31367976--31368028	26	2.0	26	82	13	65	18	0	3	77	0.92
31382594--31382642	25	2.0	25	83	0	62	34	18	16	30	1.93
31382673--31382728	10	5.5	10	75	8	51	35	10	19	33	1.87
31382679--31382728	21	2.4	21	86	0	64	36	12	20	32	1.89
31382775--31382846	25	2.9	24	81	8	81	29	26	19	25	1.99
31382841--31382898	25	2.3	25	100	0	116	31	20	22	25	1.98
31385069--31385096	11	2.5	11	100	0	56	28	25	21	25	1.99
31387323--31387423	44	2.3	44	85	0	139	35	18	19	25	1.95
31387323--31387453	44	3.0	44	82	3	138	34	19	19	25	1.96
31387820--31387847	13	2.2	13	100	0	56	50	28	0	21	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31389275--31389326	22	2.4	22	86	0	68	17	3	7	71	1.25
31390303--31390375	23	3.2	23	80	1	94	43	41	2	12	1.56
31405147--31405216	31	2.3	31	82	2	79	47	25	8	18	1.77
31405225--31405297	30	2.4	30	77	8	85	34	19	10	35	1.87
31411624--31411672	22	2.2	23	92	3	82	59	12	2	26	1.44
31415902--31416022	3	40.7	3	73	14	81	58	3	5	32	1.38
31430412--31430836	73	5.9	73	86	6	503	27	16	24	32	1.96
31430393--31430840	147	3.1	144	85	6	577	27	16	23	33	1.95
31430830--31430865	14	2.6	14	90	0	54	19	25	2	52	1.59
31430918--31430942	13	1.9	13	100	0	50	24	12	0	64	1.27
31433119--31433176	9	6.6	9	74	16	50	36	0	5	58	1.20
31434790--31434847	3	19.3	3	79	13	66	63	1	5	29	1.25
31434794--31434847	12	4.5	12	86	9	74	62	1	5	29	1.28
31434808--31434894	26	3.4	24	75	13	68	59	4	9	26	1.47
31435927--31435970	24	1.9	23	86	9	63	18	6	11	63	1.48
31437340--31437814	230	2.1	231	98	1	918	33	17	9	39	1.83
31437836--31437877	21	2.0	21	85	0	57	26	14	2	57	1.50
31437903--31437973	30	2.4	28	80	15	81	25	16	5	52	1.66
31439509--31439669	42	3.7	42	81	8	162	28	24	14	32	1.95
31439691--31439839	31	4.8	31	89	3	237	26	27	19	26	1.99
31439815--31439943	50	2.5	51	88	2	188	25	23	15	35	1.94
31456356--31456385	14	2.1	14	93	0	51	46	36	0	16	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31464090--31464119	14	2.1	14	93	0	51	46	36	0	16	1.47
31466736--31466786	25	1.9	27	84	11	70	25	19	3	50	1.64
31476212--31476250	17	2.2	18	86	4	53	64	15	0	20	1.30
31479834--31479904	27	2.6	27	81	0	79	18	26	30	23	1.97
31485058--31485267	3	70.3	3	80	8	207	31	6	0	62	1.20
31485057--31485265	25	8.3	26	76	12	138	31	6	0	62	1.20
31486952--31487028	38	2.0	38	92	0	127	35	16	18	29	1.93
31489390--31489422	16	2.1	16	88	11	50	60	12	6	21	1.53
31490654--31490683	15	1.9	16	93	6	53	10	3	33	53	1.51
31491055--31492011	205	4.7	205	91	0	1484	29	22	17	30	1.97
31491055--31492011	411	2.3	409	90	0	1511	29	22	17	30	1.97
31496436--31496649	24	9.0	24	88	4	310	28	20	21	29	1.98
31496457--31496648	47	4.1	47	93	3	305	29	19	21	29	1.98
31496782--31496829	25	1.9	25	82	0	60	25	14	25	35	1.94
31505538--31505570	16	2.1	16	88	11	50	60	12	6	21	1.53
31510896--31511012	45	2.7	43	78	5	126	29	12	27	29	1.93
31511120--31511244	44	2.8	45	73	6	112	29	20	21	28	1.98
31510975--31511662	143	4.8	143	88	0	930	31	19	20	28	1.97
31513203--31513259	15	3.9	15	90	2	89	50	12	0	36	1.40
31514478--31514542	8	7.4	10	73	26	67	56	0	0	43	0.99
31514481--31514544	5	12.4	5	98	1	110	57	0	0	42	0.98
31514995--31515249	44	5.5	43	68	14	125	27	23	18	30	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31514995--31515689	143	4.9	143	87	1	919	28	21	18	31	1.97
31515180--31515544	44	7.8	44	69	12	163	27	21	20	30	1.98
31515269--31515547	44	6.1	45	70	11	181	27	19	20	32	1.97
31523074--31523114	21	2.0	21	95	0	73	14	24	29	31	1.95
31524478--31524537	27	2.2	27	96	0	111	50	43	0	6	1.28
31524502--31524537	17	2.2	17	90	5	56	50	44	0	5	1.25
31525080--31525105	13	2.0	13	100	0	52	23	23	7	46	1.78
31534669--31534707	10	3.9	10	83	12	53	69	2	10	17	1.28
31537072--31537120	23	2.1	23	84	3	62	57	0	16	26	1.40
31537184--31537239	22	2.5	21	82	8	67	53	1	14	30	1.51
31537173--31537242	33	2.1	33	84	5	88	52	1	17	28	1.53
31537197--31537245	16	2.9	17	77	14	57	53	2	16	28	1.54
31537432--31537490	28	2.1	28	84	9	75	57	0	15	27	1.38
31537496--31537559	17	3.6	16	72	24	56	67	0	15	17	1.24
31537496--31537567	17	4.0	16	72	22	54	66	0	15	18	1.25
31537486--31537593	38	2.9	38	92	1	173	63	0	15	20	1.30
31537508--31537803	21	13.9	20	69	20	133	60	0	13	25	1.36
31537581--31537650	29	2.5	28	81	9	72	58	0	12	28	1.35
31537474--31537796	21	17.6	18	68	24	110	60	0	13	25	1.36
31537704--31537773	5	12.8	5	74	16	59	54	1	17	27	1.51
31537546--31537717	94	1.8	95	82	8	226	60	0	13	26	1.33
31537707--31537761	17	3.6	17	72	27	68	52	0	18	29	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31537704--31537773	28	2.5	28	97	0	131	54	1	17	27	1.51
31537685--31537771	28	3.8	23	75	21	76	57	1	14	26	1.45
31537542--31537744	94	2.2	92	80	11	223	60	0	13	25	1.34
31537704--31537795	28	3.3	28	86	6	89	56	1	15	27	1.46
31538017--31538081	20	3.1	21	81	18	66	64	0	10	24	1.25
31538031--31538090	18	3.4	17	80	8	59	63	0	10	26	1.26
31538045--31538417	42	9.3	42	65	24	141	61	1	12	24	1.41
31538116--31538211	17	5.4	17	74	18	70	57	1	13	28	1.43
31538124--31538198	28	2.6	28	82	2	96	57	0	14	28	1.38
31538155--31538198	23	1.9	23	86	9	63	59	0	13	27	1.35
31538260--31538298	17	2.2	18	86	13	55	64	0	12	23	1.28
31538379--31538438	16	4.0	16	71	28	60	61	0	16	21	1.34
31538189--31538423	124	2.0	116	86	6	326	62	2	12	22	1.42
31538411--31538514	5	19.2	5	70	20	59	53	0	19	25	1.51
31538405--31538514	11	9.4	12	65	23	56	53	0	19	26	1.51
31538388--31538452	27	2.4	29	75	19	68	58	1	16	23	1.47
31538411--31538514	17	6.4	15	68	21	59	53	0	19	25	1.51
31538505--31538627	38	3.2	36	76	17	122	65	3	10	21	1.38
31538476--31538627	17	8.5	17	71	18	62	62	2	12	22	1.42
31538247--31538620	21	17.6	21	65	22	131	61	2	13	22	1.43
31538623--31538799	17	10.5	17	70	22	106	56	1	16	25	1.49
31538623--31538799	5	31.6	5	70	18	84	56	1	16	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31538637--31538698	23	2.7	23	87	2	81	53	3	19	24	1.60
31538629--31538798	28	6.2	27	73	14	111	56	1	16	25	1.47
31543012--31543054	18	2.5	17	85	14	54	18	2	2	76	1.00
31543013--31543054	10	4.0	10	87	12	50	19	2	2	76	1.01
31544683--31544751	27	2.6	27	93	2	113	27	21	15	34	1.94
31551727--31551793	29	2.3	30	79	10	84	49	5	10	34	1.62
31556650--31556755	48	2.2	49	96	3	196	29	21	6	42	1.78
31559283--31559318	19	1.9	19	88	5	56	30	8	25	36	1.85
31570048--31570097	18	2.8	18	87	0	73	30	16	10	44	1.80
31570321--31570351	16	1.9	16	100	0	62	25	48	6	19	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325