Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Gbar_A05
Parameters: 2 7 7 80 10 50 1000
Length:  102776486

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  276  of  325  ( 38985 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88609838--88609871
8
4.2
8
100
0
68
64
0
11
23
1.26
88613695--88613751
29
2.0
29
82
0
69
45
0
14
40
1.44
88617504--88617546
18
2.4
18
92
0
68
44
6
25
23
1.78
88618129--88618159
7
4.4
7
95
0
53
58
12
3
25
1.50
88619056--88619128
10
7.0
11
72
10
55
67
1
1
30
1.08
88619068--88619132
32
2.1
32
88
8
98
69
1
1
27
1.07
88620813--88620888
38
2.0
38
87
5
109
39
14
13
32
1.85
88621159--88621188
14
2.1
14
100
0
60
0
16
6
76
0.99
88624309--88624362
28
2.0
27
82
10
65
31
1
3
62
1.23
88624383--88624436
14
4.2
13
71
23
51
33
0
3
62
1.12
88624386--88624454
15
4.6
16
73
16
51
34
1
4
59
1.26
88624519--88624604
16
5.2
16
72
14
50
37
3
0
59
1.15
88624906--88624961
17
3.2
18
78
14
64
35
1
0
62
1.06
88624895--88624967
17
4.6
16
75
9
60
38
1
0
60
1.06
88624904--88624967
31
2.1
31
83
13
80
39
1
0
59
1.07
88629130--88629166
17
2.2
17
90
4
58
62
10
2
24
1.41
88629632--88629721
13
6.9
13
79
0
108
26
7
31
34
1.85
88629639--88629713
26
2.9
26
97
0
141
26
8
34
30
1.85
88631982--88632075
44
2.2
44
90
1
145
52
11
10
25
1.70
88634569--88634602
15
2.3
15
94
0
59
23
5
29
41
1.78
88637627--88638081
35
12.5
35
79
10
418
36
15
23
24
1.94
88637627--88638081
72
6.2
71
78
11
451
36
15
23
24
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88637620--88638081
109
4.2
108
79
9
444
36
16
22
24
1.94
88642889--88642942
21
2.5
22
85
8
76
27
9
35
27
1.87
88643056--88643102
19
2.6
18
82
3
58
59
4
2
34
1.29
88643111--88643167
30
1.9
30
92
0
96
31
14
10
43
1.79
88646052--88646110
25
2.5
23
81
13
75
61
3
32
3
1.29
88648520--88648600
40
2.0
40
97
0
153
37
29
8
24
1.85
88650019--88650302
145
2.0
146
91
2
464
33
15
12
37
1.86
88654660--88654692
16
2.1
16
94
0
57
39
15
6
39
1.72
88659537--88659609
37
2.0
37
100
0
146
43
10
13
31
1.79
88661605--88661679
33
2.3
32
81
6
80
56
13
5
25
1.58
88670586--88670617
12
2.7
12
100
0
64
46
6
18
28
1.73
88671514--88671648
5
27.0
5
100
0
270
60
0
0
40
0.97
88679087--88679133
5
9.2
5
86
4
67
55
2
0
42
1.12
88682622--88682659
20
2.0
20
89
5
60
34
7
2
55
1.43
88682688--88682738
23
2.1
24
82
7
59
3
23
0
72
1.01
88685780--88685837
16
3.5
17
81
6
66
58
1
6
32
1.35
88685822--88685877
29
2.0
28
85
3
76
51
3
5
39
1.42
88685893--88685953
29
2.1
29
84
0
77
67
4
1
26
1.20
88689681--88690112
216
2.0
216
96
0
801
32
18
19
29
1.95
88696846--88696895
20
2.7
18
80
20
59
44
2
4
50
1.32
88696866--88696967
42
2.4
42
86
3
132
45
4
2
47
1.39
88702764--88702866
42
2.4
42
80
7
109
21
11
34
32
1.89
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88702962--88703018
11
5.5
10
78
14
62
80
0
1
17
0.79
88702963--88703019
6
9.7
6
77
19
50
82
0
1
15
0.75
88702962--88703007
16
2.9
16
86
0
65
80
0
2
17
0.81
88702964--88703019
16
3.6
16
77
15
55
82
0
1
16
0.76
88710494--88710541
24
2.0
24
83
0
60
25
33
2
39
1.67
88712040--88712339
149
2.0
149
96
0
546
31
15
14
39
1.87
88712912--88712966
3
18.3
3
96
0
101
0
30
0
69
0.89
88715992--88716125
67
2.0
67
97
0
250
30
18
12
38
1.88
88723954--88724012
21
2.8
22
80
7
61
22
0
8
69
1.15
88723983--88724032
26
2.0
24
88
7
73
30
0
6
64
1.18
88726869--88726997
65
2.0
65
89
4
197
48
3
1
45
1.30
88726861--88726958
20
4.6
20
70
19
72
48
4
1
45
1.28
88726876--88726960
11
7.7
11
67
17
52
49
2
1
47
1.22
88729177--88729221
22
2.0
22
86
0
63
24
33
24
17
1.96
88730344--88730373
7
4.3
7
100
0
60
30
13
13
43
1.82
88730904--88730944
17
2.4
18
80
12
50
53
0
9
36
1.34
88738696--88738735
20
2.0
20
90
5
62
25
5
2
67
1.23
88743670--88743718
22
2.2
22
77
0
53
46
2
0
51
1.12
88746332--88746369
4
9.2
4
94
5
67
23
0
0
76
0.79
88746332--88746370
13
3.1
13
96
3
71
23
0
0
76
0.78
88747094--88747134
18
2.2
19
83
12
50
46
14
19
19
1.84
88747114--88747224
45
2.5
45
90
0
177
41
18
18
21
1.90
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88747202--88747226
12
2.1
12
100
0
50
40
20
24
16
1.91
88748282--88748324
5
8.6
5
100
0
86
60
0
0
39
0.97
88748890--88748915
13
2.0
13
100
0
52
69
0
0
30
0.89
88748926--88748994
26
2.6
25
82
11
68
68
1
24
5
1.20
88749784--88750066
18
15.3
18
72
10
176
36
14
12
36
1.84
88750230--88750254
6
4.2
6
100
0
50
52
16
16
16
1.76
88750235--88750344
45
2.4
45
90
0
175
43
18
17
20
1.88
88750324--88750350
6
4.5
6
100
0
54
48
14
18
18
1.82
88750230--88750359
45
2.7
48
82
10
167
43
19
18
19
1.89
88758604--88758657
26
2.1
26
96
0
99
50
9
14
25
1.73
88776511--88776577
9
7.4
9
86
0
80
40
26
8
23
1.84
88776520--88776577
27
2.1
27
90
0
89
39
27
8
24
1.84
88776583--88776646
17
3.6
17
72
12
65
50
15
3
31
1.60
88776576--88776651
37
2.1
37
97
0
143
44
14
5
35
1.68
88778562--88778653
46
2.0
46
97
0
175
48
17
11
21
1.79
88781331--88781366
18
2.0
18
94
0
63
2
11
8
77
1.08
88781504--88781532
13
2.1
14
93
6
51
20
3
0
75
0.94
88785745--88786010
47
5.7
46
77
10
238
28
18
30
22
1.98
88785742--88786007
94
2.8
92
82
10
285
28
18
29
22
1.98
88787517--88787629
36
3.2
36
70
7
95
30
22
22
25
1.99
88787504--88787692
70
2.7
70
84
0
243
33
21
21
24
1.97
88787606--88787694
35
2.5
36
80
5
110
34
19
21
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88794734--88794807
32
2.3
32
85
0
103
32
5
24
37
1.78
88795361--88795389
12
2.5
12
94
5
51
17
6
51
24
1.69
88797119--88797157
20
2.0
20
85
10
53
64
2
33
0
1.08
88798320--88798455
72
1.9
72
87
3
202
35
16
25
22
1.95
88798464--88798503
18
2.2
18
90
0
62
0
45
32
22
1.53
88800172--88800213
18
2.5
17
78
21
52
38
0
7
54
1.28
88800370--88800405
13
2.9
13
92
8
58
30
0
2
66
1.06
88800345--88801599
148
8.5
150
86
4
1684
29
7
6
56
1.51
88800649--88800709
14
4.2
14
70
15
52
24
1
3
70
1.11
88801110--88801145
13
2.8
13
95
4
65
25
0
2
72
0.98
88801257--88801294
13
2.9
14
84
11
53
28
5
0
65
1.14
88802175--88802231
3
20.0
3
75
10
57
0
35
0
64
0.93
88802756--88802843
39
2.3
36
79
9
95
69
1
4
25
1.14
88803292--88803334
21
2.0
21
81
4
50
53
0
0
46
1.00
88803298--88803342
20
2.1
21
88
8
65
51
0
0
48
1.00
88803362--88803426
32
2.0
32
81
3
76
35
1
4
58
1.28
88807002--88807400
168
2.4
165
88
6
569
27
33
0
38
1.61
88807779--88807838
18
3.3
18
73
17
52
36
5
0
58
1.20
88811999--88812114
57
2.0
57
85
11
157
26
14
6
51
1.67
88820870--88820907
19
2.0
19
89
0
58
31
21
10
36
1.87
88820914--88820998
36
2.3
37
86
6
120
25
27
20
27
1.99
88822619--88822662
16
2.8
16
96
0
79
27
31
25
15
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
88822634--88822782
38
3.9
38
83
1
201
36
27
18
16
1.93
88822639--88822782
75
1.9
76
86
1
209
37
27
18
17
1.93
88827271--88827346
25
3.1
24
81
5
98
25
22
23
28
1.99
88827281--88827358
24
3.2
24
70
7
68
28
24
20
26
1.99
88828695--88828744
9
5.6
9
83
9
66
44
22
8
26
1.80
88828764--88828798
6
5.5
6
87
12
52
17
0
2
80
0.84
88828769--88828795
14
1.9
14
100
0
54
22
0
3
74
0.98
88829093--88829128
19
1.9
19
88
5
56
19
16
16
47
1.83
88833832--88833879
12
4.0
12
77
0
51
68
0
2
29
1.01
88835562--88835802
132
1.8
135
80
2
299
26
19
22
30
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325