genome.fa.s4.2.7.7.80.10.50.1000.104.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  104  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30636449--30636623	46	3.8	46	80	11	214	29	29	21	20	1.98
30636457--30636642	46	4.0	46	73	18	145	28	29	20	21	1.98
30643934--30644105	93	1.8	93	96	0	317	27	29	21	20	1.98
30643927--30644102	46	3.8	46	79	12	216	28	29	21	20	1.98
30655040--30655179	39	3.6	39	80	7	115	30	21	25	22	1.99
30655038--30655206	40	4.3	39	76	12	150	28	20	26	24	1.99
30660694--30660884	50	3.9	50	83	2	226	38	22	14	24	1.92
30660656--30660793	75	1.9	74	84	1	186	35	26	16	21	1.95
30660704--30660834	25	5.2	25	71	17	101	37	24	14	23	1.92
30660704--30660886	25	7.3	25	68	18	76	37	22	15	24	1.93
30667325--30667554	39	5.9	39	92	0	361	25	23	30	20	1.98
30669742--30670016	50	5.5	50	77	6	243	38	21	16	24	1.92
30669823--30670010	25	7.6	25	69	20	117	36	24	15	22	1.94
30671651--30671717	6	11.5	6	74	17	61	50	10	0	38	1.37
30671655--30671718	4	16.0	4	83	0	74	50	9	0	40	1.35
30671651--30671717	16	4.2	16	88	0	89	50	10	0	38	1.37
30671655--30671718	12	5.3	12	86	0	83	50	9	0	40	1.35
30671651--30671718	10	7.0	10	83	6	77	50	10	0	39	1.37
30674625--30674763	50	2.7	50	81	4	154	25	15	25	33	1.95
30674671--30674798	50	2.5	50	79	1	139	25	18	25	30	1.98
30675583--30675632	24	2.1	24	96	0	91	34	6	8	52	1.55
30682334--30682472	51	2.7	51	80	2	136	28	17	25	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30689708--30689749	22	2.0	21	95	4	75	21	23	40	14	1.90
30690828--30690876	17	2.8	18	74	22	50	24	18	22	34	1.96
30691698--30691864	40	4.2	40	79	6	169	25	21	27	25	1.99
30698845--30698893	17	2.8	18	74	22	50	24	18	22	34	1.96
30699716--30699882	40	4.2	40	79	6	169	25	21	27	25	1.99
30707135--30707318	40	4.6	39	75	6	138	26	23	27	22	2.00
30707175--30707363	80	2.4	81	77	4	186	23	24	29	22	1.99
30709163--30709191	14	2.1	14	100	0	58	34	0	13	51	1.42
30714665--30714972	155	2.0	155	90	0	481	24	18	30	26	1.98
30715336--30715407	26	2.7	27	82	2	83	18	20	22	38	1.93
30716802--30717024	39	5.6	38	80	7	214	26	26	21	25	2.00
30716802--30717025	40	5.7	38	81	7	234	26	25	21	25	2.00
30716802--30717025	79	2.8	78	84	8	283	26	25	21	25	2.00
30721267--30721429	24	6.8	24	95	0	290	34	26	18	20	1.95
30727766--30727808	16	2.6	16	86	13	61	4	16	9	69	1.31
30727770--30727808	18	2.3	18	91	8	64	5	17	10	66	1.39
30729256--30729330	26	2.9	26	80	4	80	17	17	22	42	1.89
30740237--30740293	26	2.2	26	80	3	60	28	19	19	33	1.96
30745842--30745882	21	2.0	21	85	4	57	19	36	21	21	1.95
30755185--30755352	40	4.2	40	77	6	169	24	21	29	25	1.99
30763179--30763346	40	4.2	40	77	6	169	24	21	29	25	1.99
30765257--30765474	40	5.5	40	89	2	298	22	23	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30767728--30767770	22	1.9	23	81	13	54	46	9	30	13	1.75
30773188--30773323	38	3.5	40	85	8	167	25	22	29	23	1.99
30774858--30775020	39	4.2	39	91	0	263	22	20	33	23	1.97
30774858--30775051	39	4.9	39	89	0	253	22	21	32	23	1.98
30779117--30779298	39	4.6	39	86	2	231	23	30	21	24	1.99
30786549--30786731	39	4.6	39	87	0	240	22	30	22	24	1.99
30789638--30789666	8	3.8	8	95	4	51	79	0	0	20	0.74
30791663--30791813	40	3.8	40	74	13	123	26	23	27	22	2.00
30791707--30791854	80	1.9	80	79	2	172	22	23	29	23	1.99
30795586--30795686	28	3.5	28	86	6	114	28	13	27	29	1.95
30795615--30795686	29	2.5	28	91	6	110	29	13	27	29	1.95
30803643--30803743	28	3.5	28	86	6	114	28	13	27	29	1.95
30803672--30803743	29	2.5	28	91	6	110	29	13	27	29	1.95
30805516--30805578	30	2.2	29	83	8	76	53	1	1	42	1.19
30805522--30805581	23	2.6	25	79	12	74	53	1	1	43	1.20
30805742--30805783	16	2.7	16	78	14	52	38	0	4	57	1.20
30807121--30807185	21	3.0	22	69	15	62	16	20	23	40	1.92
30809693--30809732	2	20.0	2	94	0	71	50	0	2	47	1.14
30811465--30811511	23	2.1	22	84	4	58	68	6	6	19	1.34
30814098--30814151	6	8.7	6	90	8	72	11	18	3	66	1.37
30814983--30815023	18	2.4	17	84	15	57	68	4	2	24	1.22
30820500--30820749	40	6.2	40	91	1	385	22	28	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30828674--30828883	40	5.2	40	88	2	305	21	28	24	25	1.99
30833514--30833859	170	2.0	170	99	0	683	35	19	11	32	1.89
30835330--30835373	22	1.9	23	86	9	63	47	0	11	40	1.39
30835675--30835724	21	2.4	21	80	3	57	32	6	14	48	1.67
30840456--30840496	19	2.2	19	95	0	73	63	4	7	24	1.40
30842742--30842768	9	3.0	9	100	0	54	33	44	0	22	1.53
30847676--30847739	28	2.3	28	91	5	103	32	29	7	29	1.86
30847845--30847931	27	3.1	27	78	8	95	19	24	22	33	1.97
30848397--30848435	19	2.1	19	85	0	51	15	5	7	71	1.26
30853164--30853204	21	2.0	21	90	0	64	0	51	21	26	1.48
30857944--30858042	27	3.5	28	80	4	101	32	27	15	25	1.95
30858026--30858127	42	2.4	42	98	0	195	21	35	15	27	1.94
30868588--30868738	38	3.9	39	85	4	198	23	30	21	25	1.99
30868557--30868737	78	2.3	77	86	4	247	22	29	22	24	1.99
30869887--30869915	13	2.2	13	100	0	58	58	20	6	13	1.58
30876786--30876853	28	2.6	26	83	6	84	30	26	14	27	1.95
30876866--30877008	42	3.4	42	97	0	270	21	34	14	29	1.93
30883733--30883765	2	16.5	2	100	0	66	48	0	0	51	1.00
30884451--30884661	9	22.6	9	72	18	155	32	0	20	46	1.54
30884466--30884661	18	10.1	18	78	14	176	32	0	20	46	1.55
30884484--30884644	39	4.0	39	94	4	259	32	0	20	46	1.51
30885219--30885291	23	3.2	23	100	0	146	34	16	16	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30886439--30886478	2	20.0	2	100	0	80	50	0	0	50	1.00
30887130--30887158	15	1.9	15	100	0	58	41	6	20	31	1.79
30888917--30888951	6	5.8	6	86	0	52	37	28	31	2	1.72
30895449--30895628	90	2.0	90	98	0	351	31	16	13	38	1.88
30900804--30900841	19	2.0	19	100	0	76	21	26	10	42	1.85
30906168--30906210	18	2.3	19	88	8	70	62	4	11	20	1.46
30906176--30906217	18	2.3	18	100	0	84	61	4	19	14	1.49
30906831--30906868	17	2.3	17	86	4	51	28	5	0	65	1.14
30910895--30910940	24	2.0	23	83	12	58	32	17	8	41	1.80
30917648--30917928	40	7.0	40	81	4	325	36	17	28	17	1.93
30917708--30917841	20	6.7	20	67	13	78	35	18	29	16	1.93
30917648--30917928	80	3.5	80	85	1	359	36	17	28	17	1.93
30917648--30917928	120	2.3	120	88	2	404	36	17	28	17	1.93
30917827--30917892	20	3.3	20	68	8	62	28	13	36	21	1.91
30919323--30919515	39	4.9	39	87	0	233	24	31	20	23	1.98
30919353--30919515	39	4.2	39	90	0	245	25	31	19	23	1.98
30924883--30925032	38	3.9	37	73	11	124	15	18	27	38	1.91
30924974--30925016	22	2.0	22	81	9	52	9	20	32	37	1.85
30930984--30931337	177	2.0	177	97	0	663	38	20	12	28	1.89
30932062--30932094	17	1.9	17	100	0	66	57	12	12	18	1.64
30935425--30935584	29	5.5	29	82	4	171	25	30	16	26	1.97
30937862--30937964	41	2.5	41	84	6	127	20	33	29	17	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30945374--30945580	40	5.2	39	82	2	209	25	26	22	26	2.00
30945374--30945579	79	2.6	80	82	4	238	25	26	22	25	2.00
30951598--30951698	28	3.5	28	84	4	103	28	13	27	29	1.95
30951627--30951698	29	2.5	29	91	6	112	30	13	26	29	1.94
30958262--30958296	18	2.0	18	88	5	54	71	0	20	8	1.11
30959582--30959682	28	3.5	28	84	4	103	28	13	27	29	1.95
30959611--30959682	29	2.5	29	91	6	112	30	13	26	29	1.94
30971965--30972362	55	7.5	54	74	10	320	23	24	16	35	1.95
30971965--30972370	54	7.6	54	74	10	282	23	24	16	35	1.95
30971977--30972423	209	2.1	209	94	0	770	24	24	15	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325