genome.fa.s4.2.7.7.80.10.50.1000.134.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  134  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40552976--40553055	37	2.1	37	88	2	115	31	28	20	20	1.97
40560566--40560664	28	3.5	28	81	9	112	29	25	16	29	1.96
40567785--40567883	28	3.5	28	81	9	112	29	25	16	29	1.96
40570464--40570840	132	2.9	132	83	2	393	33	17	19	29	1.95
40570596--40570840	132	1.9	132	91	1	402	33	17	18	30	1.94
40574805--40574837	17	1.9	17	100	0	66	48	0	3	48	1.17
40583266--40583299	2	17.0	2	100	0	68	50	0	0	50	1.00
40587401--40587430	14	2.1	14	100	0	60	56	13	10	20	1.65
40591480--40591707	46	5.0	46	88	0	303	21	23	14	41	1.89
40594479--40594503	2	12.5	2	100	0	50	48	0	0	52	1.00
40595170--40595215	23	2.0	23	83	8	58	52	0	15	32	1.43
40596264--40596301	19	2.0	20	89	5	60	34	0	18	47	1.49
40598489--40598664	46	3.8	45	79	11	196	21	19	29	29	1.98
40598485--40598656	93	1.8	93	92	2	292	20	20	30	28	1.98
40604897--40604993	40	2.5	40	83	3	126	37	36	14	12	1.84
40612169--40612261	40	2.4	40	81	3	109	38	35	12	12	1.82
40626347--40626371	13	1.9	13	100	0	50	24	28	48	0	1.52
40628912--40628941	9	3.3	9	100	0	60	10	0	0	90	0.47
40636508--40636547	21	1.9	21	85	10	55	22	2	2	72	1.09
40640814--40640865	25	2.1	25	100	0	104	32	11	11	44	1.77
40653305--40653360	26	2.2	26	100	0	112	46	7	21	25	1.76
40653342--40653483	70	2.0	72	94	2	252	46	4	11	37	1.61
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40653626--40653660	2	17.5	2	100	0	70	48	0	0	51	1.00
40661128--40661311	40	4.6	40	83	6	230	25	23	26	24	2.00
40661128--40661311	80	2.3	80	87	3	255	25	23	26	24	2.00
40665749--40665791	2	21.5	2	100	0	86	51	0	0	48	1.00
40682663--40682696	17	2.0	17	100	0	68	17	5	35	41	1.74
40695548--40695654	47	2.3	47	80	3	117	26	16	25	31	1.97
40704274--40704316	21	2.0	21	100	0	86	37	27	4	30	1.77
40712902--40712990	28	3.2	28	74	6	90	23	28	16	31	1.96
40717018--40717126	43	2.5	44	83	4	141	32	24	14	28	1.95
40717091--40717256	50	3.5	45	77	11	147	28	27	16	28	1.97
40717131--40717256	50	2.6	48	81	6	150	26	29	15	27	1.96
40719994--40720075	40	2.1	39	86	2	110	30	28	15	25	1.96
40723055--40723120	13	4.8	13	79	3	60	24	1	25	48	1.60
40723075--40723113	20	2.0	20	90	10	62	23	0	28	48	1.51
40723376--40723438	25	2.4	27	74	15	69	42	0	3	53	1.16
40723410--40723445	19	1.9	19	88	5	56	38	0	2	58	1.13
40725552--40725590	17	2.2	19	90	9	64	2	23	5	69	1.21
40727116--40727288	46	3.7	47	78	13	205	29	27	20	22	1.98
40729907--40729992	27	3.2	27	93	0	136	15	17	24	43	1.87
40729907--40730007	27	3.7	27	84	5	114	14	15	24	44	1.85
40731648--40731748	28	3.5	28	80	11	107	29	14	25	29	1.95
40731677--40731752	29	2.7	28	76	13	75	30	14	26	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40739508--40739607	29	3.5	30	82	8	118	30	15	26	29	1.95
40748311--40748383	29	2.6	29	80	2	85	21	32	17	27	1.96
40751847--40752006	29	5.5	30	88	8	213	33	14	25	26	1.94
40751847--40752006	59	2.8	57	88	4	214	33	14	25	26	1.94
40774256--40774350	41	2.5	37	81	6	100	29	14	26	29	1.95
40777673--40777697	10	2.5	10	100	0	50	36	0	8	56	1.29
40781586--40781626	21	2.0	21	85	0	55	41	4	0	53	1.22
40801080--40801125	2	23.0	2	86	0	65	50	2	4	43	1.34
40801765--40801838	29	2.6	29	89	4	105	24	17	33	24	1.96
40812727--40812775	9	6.0	8	78	21	57	32	0	14	53	1.41
40812727--40812774	8	5.8	9	75	24	52	31	0	14	54	1.41
40812722--40812771	24	2.1	24	100	0	100	28	0	16	56	1.41
40817237--40817453	48	4.6	49	80	9	236	23	32	18	25	1.97
40817241--40817502	142	1.9	141	83	7	343	23	30	19	26	1.98
40819387--40819562	46	3.8	46	78	12	207	19	21	30	28	1.98
40819386--40819555	93	1.8	93	96	0	313	20	21	30	28	1.98
40821229--40821301	37	2.0	37	97	0	137	19	23	13	43	1.86
40821915--40822008	43	2.2	43	84	0	125	25	14	19	40	1.90
40821940--40822031	43	2.1	43	82	7	107	27	10	18	43	1.83
40821975--40822077	43	2.4	43	80	3	109	26	11	17	44	1.83
40822920--40822994	36	2.1	36	100	0	150	40	17	16	26	1.90
40830870--40830903	12	2.8	12	86	13	52	44	0	2	52	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40834785--40834827	20	2.2	20	87	8	61	48	2	0	48	1.14
40834785--40834826	21	2.0	20	82	13	50	50	2	0	47	1.14
40836981--40837074	41	2.3	41	87	1	127	20	21	6	52	1.68
40845836--40845965	46	2.8	48	81	11	171	29	29	20	20	1.98
40845841--40845984	46	3.1	45	75	11	148	29	29	20	20	1.98
40848346--40848433	29	3.0	29	80	8	97	56	15	17	10	1.66
40848346--40848424	15	5.4	15	77	10	83	58	13	17	10	1.63
40848357--40848433	15	5.2	15	75	9	77	55	15	16	11	1.68
40851346--40851517	93	1.8	93	96	0	317	27	30	22	20	1.98
40851338--40851513	46	3.8	46	81	10	232	28	29	21	20	1.98
40857786--40857919	53	2.5	53	90	2	198	29	26	17	26	1.98
40859938--40859965	2	14.0	2	100	0	56	50	0	0	50	1.00
40860443--40860485	17	2.6	17	79	17	54	62	0	2	34	1.08
40861494--40861554	32	1.9	32	86	6	88	36	8	11	44	1.71
40861724--40861768	21	2.1	21	87	0	63	46	6	8	37	1.61
40863060--40863133	30	2.5	30	97	0	139	14	18	37	28	1.91
40866204--40866384	46	3.9	46	81	9	233	20	21	29	27	1.98
40866206--40866376	93	1.8	93	96	0	315	20	22	29	27	1.98
40866943--40867086	72	2.0	72	100	0	288	36	13	16	33	1.89
40867789--40867916	46	2.8	45	81	10	143	27	17	31	23	1.97
40867797--40867966	47	3.6	48	82	10	160	26	17	31	24	1.97
40871308--40871373	28	2.3	27	76	19	71	51	9	3	36	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40880175--40880227	21	2.5	22	79	11	67	26	16	22	33	1.96
40881162--40881205	23	1.9	23	95	0	79	22	13	9	54	1.67
40888911--40889666	383	2.0	367	89	5	1129	31	14	23	30	1.94
40894295--40894470	48	3.7	47	82	6	194	25	29	18	26	1.98
40894293--40894654	46	7.7	46	74	11	204	24	29	18	27	1.98
40894292--40894657	94	3.9	98	75	11	329	24	29	18	27	1.98
40907060--40907108	17	2.8	18	74	22	50	24	18	22	34	1.96
40907930--40908096	40	4.2	40	79	6	169	25	21	27	25	1.99
40915070--40915118	17	2.8	18	74	22	50	24	18	22	34	1.96
40915941--40916107	40	4.2	40	79	6	169	25	21	27	25	1.99
40918016--40918156	38	3.7	37	83	1	138	31	15	26	26	1.96
40919796--40919844	19	2.6	18	78	9	53	38	2	2	57	1.22
40926966--40927018	24	2.2	24	89	0	79	50	5	32	11	1.61
40928127--40928162	16	2.4	16	86	13	51	77	0	11	11	0.99
40928758--40928947	96	2.0	96	94	0	335	38	15	20	25	1.92
40933426--40933507	31	2.6	31	82	1	83	59	7	14	18	1.57
40934991--40935066	38	2.1	37	90	5	118	61	2	10	25	1.41
40935789--40935826	10	3.8	10	83	13	51	65	2	7	23	1.32
40936482--40936671	99	1.9	99	86	2	274	32	24	13	30	1.94
40937653--40937720	6	10.8	6	82	17	77	76	0	1	22	0.87
40940032--40940258	49	4.6	50	78	6	237	25	18	26	29	1.98
40943054--40943098	15	2.9	15	86	3	63	17	15	13	53	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40948736--40948968	49	4.7	50	84	2	317	24	18	27	29	1.98
40948739--40948981	100	2.4	98	86	3	335	25	18	27	29	1.98
40950850--40950923	39	1.9	39	86	5	107	60	2	8	28	1.39
40963336--40963527	40	4.8	40	90	2	264	27	19	25	27	1.99
40963302--40963527	40	5.7	40	87	4	255	26	20	26	26	1.99
40970912--40970950	16	2.4	16	95	0	69	38	15	23	23	1.92
40970866--40970988	62	2.0	62	90	3	194	42	14	24	18	1.88
40971283--40971315	17	2.0	17	94	5	59	48	0	15	36	1.45
40972433--40972481	20	2.5	20	86	0	62	20	32	24	22	1.98
40972445--40972483	20	2.0	20	94	0	69	15	28	35	20	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325