genome.fa.s4.2.7.7.80.10.50.1000.223.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  223  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69421880--69421932	27	2.0	27	100	0	106	56	11	11	20	1.65
69428557--69428600	21	2.2	20	83	4	52	36	15	9	38	1.80
69428700--69428732	15	2.1	16	94	5	59	30	0	0	69	0.88
69431147--69431190	21	2.1	21	100	0	88	29	22	13	34	1.93
69431699--69431777	38	2.1	38	100	0	158	17	10	26	45	1.80
69434620--69435056	217	2.0	217	97	0	829	29	20	14	35	1.92
69448949--69448991	22	2.0	22	86	9	61	25	30	20	23	1.99
69451628--69452121	131	3.8	130	79	5	433	34	18	19	27	1.95
69453230--69453260	2	15.5	2	100	0	62	51	0	0	48	1.00
69455074--69455590	44	11.6	44	86	4	646	26	29	14	29	1.95
69455074--69455535	219	2.1	220	87	2	660	26	29	14	29	1.95
69455587--69455716	44	2.9	44	86	1	170	23	28	16	31	1.96
69456348--69456640	142	2.1	142	98	1	561	21	9	29	39	1.85
69457123--69457253	29	4.6	29	87	1	165	29	15	31	24	1.95
69457124--69457244	57	2.1	58	87	1	172	31	15	28	23	1.96
69468379--69468672	143	2.1	142	98	0	570	21	10	29	39	1.86
69469155--69469286	29	4.6	29	86	0	156	30	15	30	24	1.95
69470738--69471054	44	7.2	44	91	0	465	26	29	15	28	1.96
69485948--69485973	13	2.0	13	100	0	52	30	0	0	69	0.89
69494123--69494275	42	3.7	41	78	3	162	26	28	16	28	1.97
69495025--69495055	9	3.6	9	95	4	55	74	16	0	9	1.07
69496685--69496724	20	2.0	20	95	0	71	42	22	5	30	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69507039--69507137	46	2.1	47	83	1	119	28	25	10	36	1.88
69508262--69508297	17	2.1	17	100	0	72	16	25	5	52	1.65
69510797--69511004	40	5.2	40	80	3	177	26	22	25	25	2.00
69510798--69511004	80	2.6	80	81	4	229	26	22	25	26	2.00
69520176--69520224	15	3.3	15	76	21	57	20	28	26	24	1.99
69520176--69520232	30	1.9	30	85	7	80	17	28	28	26	1.98
69520983--69521149	41	4.1	41	80	0	190	33	9	29	26	1.88
69536938--69537123	40	4.7	40	86	5	234	26	27	22	24	2.00
69545858--69546001	54	2.6	55	76	11	154	21	22	18	36	1.95
69553448--69553562	61	1.9	61	94	0	203	39	13	22	24	1.91
69560776--69560983	40	5.2	40	83	2	220	25	25	23	25	2.00
69565783--69565950	40	4.2	40	82	2	196	25	27	22	25	2.00
69572773--69572968	78	2.5	80	86	10	294	28	20	25	25	1.99
69572773--69572968	40	4.9	40	89	7	278	28	20	25	25	1.99
69572773--69572996	40	5.7	40	88	6	273	27	20	25	25	1.99
69572864--69573015	40	3.8	40	87	6	116	26	21	26	25	1.99
69575700--69575835	49	2.7	49	86	2	191	25	20	25	27	1.99
69575695--69575835	51	2.8	51	84	2	187	24	20	26	27	1.99
69584707--69584803	48	2.0	48	97	0	185	28	25	4	41	1.74
69589568--69589678	58	1.9	58	87	1	161	27	29	13	28	1.94
69589577--69589678	29	3.6	29	77	4	91	27	29	14	28	1.95
69589750--69589783	18	1.9	18	88	5	52	20	38	23	17	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69589902--69589945	8	5.4	8	80	2	52	6	25	20	47	1.74
69591230--69591265	16	2.2	17	90	5	56	19	2	22	55	1.56
69594172--69594286	29	4.0	29	80	10	121	27	26	14	30	1.95
69594363--69594408	9	4.9	9	84	7	56	19	36	15	28	1.92
69594364--69594414	10	5.3	10	81	6	61	17	39	17	25	1.92
69594364--69594408	19	2.4	19	96	0	81	17	37	15	28	1.91
69594517--69594568	24	2.2	24	86	6	70	11	21	15	51	1.74
69596230--69596383	39	3.9	39	86	0	191	24	31	21	22	1.98
69596260--69596383	39	3.2	39	90	1	194	25	32	20	22	1.98
69604153--69604306	39	3.9	39	86	0	191	24	31	21	22	1.98
69604183--69604306	39	3.2	39	90	1	194	25	32	20	22	1.98
69607017--69607048	16	2.0	16	93	0	55	9	6	34	50	1.60
69607335--69607378	22	2.0	22	86	0	61	38	27	2	31	1.69
69608131--69608168	12	3.2	12	88	0	58	78	0	2	18	0.86
69611605--69611688	41	2.0	41	95	0	150	35	13	17	33	1.89
69612081--69612338	50	5.2	50	92	0	417	44	20	9	24	1.81
69613169--69613198	15	2.0	15	93	0	51	56	13	0	30	1.37
69619924--69620185	50	5.2	50	90	0	407	40	20	11	26	1.87
69622955--69623069	44	2.7	41	79	11	133	22	19	25	33	1.97
69630670--69630834	43	3.9	42	78	10	158	22	16	27	33	1.96
69636999--69637051	21	2.5	21	100	0	106	41	20	28	9	1.83
69645629--69645745	28	4.2	28	93	0	180	21	12	36	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69645629--69645765	56	2.4	56	85	1	184	24	13	34	27	1.93
69646065--69646379	27	11.7	27	83	1	330	39	20	9	30	1.85
69659561--69659626	15	4.4	15	80	0	78	10	12	15	62	1.55
69659567--69659625	30	2.0	30	93	0	100	10	11	16	61	1.57
69671926--69671984	19	2.9	20	92	7	93	45	1	3	49	1.28
69672532--69672914	205	1.9	204	89	4	601	33	30	9	26	1.88
69673393--69674023	210	3.0	208	89	3	949	33	30	8	27	1.87
69674481--69675108	211	3.0	209	89	2	931	32	29	8	29	1.87
69675563--69676204	210	3.0	210	86	5	885	32	30	8	28	1.87
69676674--69677081	210	1.9	209	90	0	654	32	30	8	28	1.87
69675773--69677952	874	2.5	875	86	3	3025	27	27	10	34	1.90
69677562--69678163	203	2.9	208	83	5	707	33	28	9	28	1.88
69677768--69682513	877	5.4	872	85	4	5932	27	27	10	35	1.89
69679519--69679917	211	1.9	207	86	6	570	32	29	10	28	1.89
69681242--69681638	209	1.9	209	92	1	661	32	29	9	28	1.88
69682102--69682723	211	3.0	210	87	2	872	33	30	8	27	1.87
69683185--69683815	210	3.0	210	93	0	1028	33	31	7	27	1.85
69684036--69684075	19	2.0	20	85	9	55	15	37	2	45	1.59
69684287--69684690	211	1.9	210	90	3	643	32	30	9	27	1.89
69683396--69685828	876	2.8	873	86	3	3354	27	27	10	35	1.89
69685904--69685929	12	2.2	12	100	0	52	46	38	7	7	1.61
69686002--69686110	13	8.6	13	71	22	90	35	47	1	14	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69686002--69686048	22	2.1	22	100	0	94	36	48	0	14	1.44
69686011--69686108	31	3.3	31	76	13	116	36	47	2	13	1.54
69689373--69689419	19	2.5	19	89	6	69	29	23	6	40	1.79
69692642--69692692	20	2.6	19	78	9	57	78	13	0	7	0.96
69694082--69694564	205	2.4	205	92	0	786	30	19	20	29	1.97
69694576--69695340	44	17.4	44	76	7	646	30	17	25	26	1.97
69694589--69695297	132	5.4	132	93	0	1170	30	18	24	26	1.98
69695597--69695681	13	7.2	13	72	20	87	37	45	0	16	1.47
69695597--69695687	22	4.0	22	82	10	119	37	47	0	15	1.46
69697415--69697497	29	2.9	29	100	0	166	30	14	28	26	1.95
69697411--69697547	60	2.3	58	81	6	152	28	15	31	24	1.95
69705515--69705597	29	2.9	29	100	0	166	30	14	28	26	1.95
69705511--69705647	60	2.3	58	81	6	152	28	15	31	24	1.95
69707487--69707528	19	2.3	18	87	4	57	26	2	2	69	1.13
69707513--69707594	33	2.3	39	83	12	104	34	13	0	52	1.41
69707685--69707728	17	2.6	16	79	13	52	29	6	0	63	1.20
69710946--69711113	40	4.2	40	80	7	162	23	26	23	26	2.00
69710962--69711113	80	1.9	80	83	5	200	23	26	23	26	2.00
69712762--69712808	23	2.0	23	88	8	69	21	17	31	29	1.96
69716152--69716231	15	5.4	15	77	7	83	10	18	13	57	1.64
69716143--69716230	30	3.0	30	80	11	92	10	18	15	55	1.68
69723711--69723857	41	3.4	43	75	9	113	29	24	20	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
69730428--69730469	21	2.0	21	95	0	75	33	21	9	35	1.86
69732058--69732339	48	5.9	47	85	3	314	24	30	18	26	1.98
69732068--69732339	96	2.8	96	86	1	375	24	30	18	26	1.98
69732058--69732338	144	1.9	145	86	0	402	24	29	18	26	1.98
69734728--69734899	40	4.3	40	84	5	224	26	26	22	23	2.00
69741826--69741960	40	3.4	40	87	5	177	26	27	21	24	1.99
69741905--69742021	61	1.9	62	84	8	159	25	26	21	26	1.99
69741864--69742059	101	1.9	102	94	3	351	27	26	21	25	1.99
69741967--69742103	40	3.5	40	78	6	136	26	24	22	26	2.00
69741817--69742091	141	2.0	141	87	2	401	27	25	21	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325