genome.fa.s4.2.7.7.80.10.50.1000.118.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  118  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35432512--35432552	18	2.3	18	84	12	57	63	14	2	19	1.41
35440051--35440234	40	4.6	39	75	6	138	26	23	27	22	2.00
35440091--35440279	80	2.4	81	77	4	186	23	24	29	22	1.99
35443611--35443711	29	3.6	28	78	7	98	20	16	33	28	1.95
35443641--35443718	27	2.8	27	80	7	77	21	15	33	29	1.94
35451573--35451675	29	3.6	29	78	2	100	20	17	33	28	1.95
35454926--35454975	21	2.4	21	90	3	75	44	2	14	40	1.56
35455566--35455692	23	5.4	23	76	10	114	29	20	17	33	1.95
35458032--35458066	18	1.9	18	94	0	61	20	11	22	45	1.82
35458384--35458555	35	4.9	35	78	2	139	38	28	15	17	1.90
35458389--35458545	70	2.2	70	81	3	181	39	28	14	17	1.89
35464529--35464636	39	2.7	39	83	12	132	24	25	28	21	1.99
35472064--35472247	40	4.6	39	75	6	138	26	23	27	22	2.00
35472104--35472292	80	2.4	81	77	4	186	23	24	29	22	1.99
35479571--35479754	40	4.6	39	75	6	138	26	23	27	22	2.00
35479611--35479799	80	2.4	81	77	4	186	23	24	29	22	1.99
35484058--35484152	29	3.2	28	68	23	68	30	26	18	24	1.98
35484159--35484240	31	2.7	31	92	3	141	29	24	17	29	1.97
35484460--35484529	25	2.8	25	88	0	95	25	21	25	27	1.99
35484635--35484665	16	1.9	16	100	0	62	38	45	6	9	1.63
35485328--35485392	27	2.5	26	82	7	78	20	23	18	38	1.93
35485445--35485552	27	3.9	27	80	9	110	32	7	18	41	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35485449--35485578	56	2.4	54	82	2	152	30	6	20	43	1.76
35485507--35485664	27	5.9	25	74	10	109	28	10	20	41	1.84
35485430--35485610	54	3.3	54	78	3	182	32	9	18	40	1.82
35485395--35485631	54	4.4	54	75	5	181	30	9	20	40	1.84
35485652--35485754	27	3.8	25	87	6	98	42	9	19	28	1.82
35485663--35485754	27	3.4	27	92	0	148	43	8	20	27	1.81
35488263--35488561	149	2.0	149	94	1	528	31	17	17	32	1.94
35493178--35493227	25	2.0	25	100	0	100	20	36	8	36	1.82
35496119--35496215	38	2.4	41	71	13	94	24	19	27	27	1.99
35496356--35496396	18	2.3	18	87	8	57	48	0	21	29	1.50
35496883--35496920	20	1.9	20	84	10	51	47	0	10	42	1.38
35502894--35502985	46	2.0	46	100	0	184	47	15	10	26	1.78
35503225--35503533	46	6.7	44	74	11	219	23	30	19	26	1.98
35503231--35503533	94	3.3	92	84	4	344	24	30	19	26	1.98
35503314--35503533	47	4.7	44	74	16	162	23	30	20	25	1.98
35519130--35519301	93	1.8	93	92	0	290	27	29	20	21	1.98
35519123--35519298	46	3.8	46	79	12	198	28	29	20	21	1.98
35519131--35519317	46	4.0	45	73	19	152	28	29	20	21	1.98
35521029--35521116	29	3.0	29	80	8	97	56	15	17	10	1.66
35521029--35521107	15	5.4	15	77	10	83	58	13	17	10	1.63
35521040--35521116	15	5.2	15	75	9	77	55	15	16	11	1.68
35523977--35524148	93	1.8	93	93	0	299	27	29	21	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35523970--35524145	46	3.8	46	79	12	198	28	29	21	21	1.98
35523978--35524164	46	4.0	46	70	21	131	27	29	20	21	1.98
35539373--35539413	20	2.0	21	86	13	59	24	21	0	53	1.46
35539898--35539947	22	2.3	22	80	12	59	38	24	4	34	1.74
35540358--35540435	30	2.6	30	85	4	95	28	33	23	15	1.95
35540384--35540445	30	2.1	29	85	5	81	27	33	22	16	1.95
35544585--35544663	28	2.8	28	86	0	104	34	11	25	29	1.91
35546627--35546863	28	8.5	28	76	5	228	17	19	33	28	1.95
35546655--35546810	29	5.6	28	75	7	156	17	17	35	28	1.93
35546684--35546870	83	2.2	83	83	2	223	17	20	34	27	1.95
35546625--35546838	56	3.8	57	94	2	371	18	19	34	28	1.95
35549741--35549911	40	4.3	39	77	10	159	28	21	26	23	1.99
35553682--35553760	28	2.8	28	86	0	104	34	11	25	29	1.91
35559105--35559275	46	3.7	45	77	14	188	22	20	28	29	1.98
35559102--35559270	92	1.8	92	93	2	295	21	20	28	28	1.98
35566653--35566824	46	3.7	46	77	14	201	22	20	27	29	1.99
35566650--35566819	92	1.8	93	94	1	306	21	21	28	28	1.99
35569533--35569582	22	2.3	22	80	12	59	38	24	4	34	1.74
35573972--35574019	23	2.1	23	100	0	96	66	8	4	20	1.35
35581208--35581381	46	3.8	46	78	13	205	28	29	21	20	1.98
35581216--35581386	93	1.8	92	93	1	297	28	30	21	19	1.98
35581213--35581401	46	4.1	45	71	12	134	29	29	21	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35586108--35586286	46	3.8	46	77	17	181	28	18	29	23	1.98
35588322--35588427	40	2.7	40	83	0	131	27	22	25	24	2.00
35598336--35598647	44	6.6	45	73	11	195	25	18	29	25	1.98
35598470--35598650	50	3.7	50	72	11	151	25	19	28	25	1.99
35601466--35601570	40	2.6	40	76	11	108	29	24	15	30	1.95
35609247--35609284	20	1.9	20	100	0	76	23	13	10	52	1.71
35612937--35613095	35	4.5	35	77	0	156	30	9	17	42	1.81
35613876--35613906	2	15.5	2	100	0	62	48	0	0	51	1.00
35620710--35620868	35	4.5	35	78	0	165	30	9	18	42	1.82
35620707--35620884	70	2.5	70	76	2	178	29	11	18	41	1.85
35622535--35622719	79	2.3	81	82	7	218	23	27	23	24	2.00
35622528--35622719	40	4.8	39	74	8	154	23	28	23	25	2.00
35624563--35624717	40	3.9	40	83	4	179	23	20	30	25	1.98
35631138--35631225	29	2.8	31	80	13	92	36	0	13	50	1.42
35631145--35631228	32	2.6	32	76	18	84	38	0	13	48	1.42
35631177--35631322	33	4.5	31	68	22	81	36	3	15	44	1.64
35632721--35632821	28	3.5	29	86	6	125	29	27	13	28	1.95
35640783--35640883	28	3.5	29	86	6	125	29	27	13	28	1.95
35642412--35642567	29	5.5	28	84	8	138	23	35	16	25	1.95
35642440--35642567	29	4.5	29	88	4	172	23	33	15	27	1.95
35643204--35643497	141	2.1	141	97	2	556	39	28	10	21	1.86
35650372--35650444	29	2.5	29	93	0	101	26	31	16	26	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35655368--35655470	29	3.6	28	81	5	116	21	16	33	29	1.95
35663154--35663255	29	3.5	28	79	9	91	21	15	33	29	1.94
35669691--35669736	11	4.5	11	78	13	53	34	13	19	32	1.90
35669685--35669736	9	5.2	10	77	13	54	34	11	19	34	1.88
35673546--35673615	35	2.0	35	94	0	122	35	11	20	32	1.88
35673839--35673864	12	2.2	12	100	0	52	7	30	38	23	1.83
35684970--35685096	43	3.0	42	80	5	139	33	22	14	29	1.94
35687036--35687096	28	2.2	28	100	0	122	37	13	18	31	1.88
35688143--35688172	15	2.0	15	93	0	51	53	10	0	36	1.35
35691490--35691579	29	3.1	28	85	7	128	27	12	28	31	1.93
35696194--35696405	23	9.2	23	82	7	252	23	19	26	30	1.98
35696194--35696405	46	4.6	46	92	2	311	23	19	26	30	1.98
35698380--35698606	49	4.6	49	77	5	249	30	25	16	26	1.97
35698380--35698609	100	2.3	98	84	3	282	30	25	16	26	1.97
35701299--35701524	100	2.3	99	86	3	294	26	18	25	30	1.98
35701300--35701537	49	4.8	50	81	4	275	26	18	25	29	1.98
35712024--35712193	49	3.5	50	79	4	177	24	28	18	27	1.98
35716322--35716591	46	5.9	44	74	9	234	30	28	18	22	1.97
35716331--35716596	93	2.9	93	93	1	444	30	28	18	22	1.97
35716377--35716544	47	3.6	47	74	16	186	29	30	17	22	1.97
35720050--35720079	15	2.0	15	93	0	51	53	10	0	36	1.35
35720832--35720869	18	2.1	18	100	0	76	50	26	0	23	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35728924--35729140	46	4.7	46	79	9	183	29	18	28	23	1.98
35728924--35729094	92	1.8	93	85	3	238	29	18	28	23	1.98
35728927--35729140	92	2.3	91	80	7	225	29	18	28	23	1.98
35729491--35729524	17	2.0	17	94	0	59	55	0	5	38	1.24
35730845--35730979	24	5.6	24	84	3	164	21	13	32	32	1.92
35730845--35730979	72	1.9	72	84	3	182	21	13	32	32	1.92
35737625--35737792	40	4.2	40	77	3	151	22	26	23	27	2.00
35742931--35743155	49	4.5	49	85	4	272	28	27	17	25	1.98
35742929--35743162	99	2.3	100	83	3	294	28	28	17	25	1.98
35744881--35745015	24	5.6	24	82	3	146	21	14	33	31	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325