genome.fa.s4.2.7.7.80.10.50.1000.142.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  142  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43341501--43341525	7	3.6	7	100	0	50	12	0	28	60	1.32
43342395--43342464	27	2.5	28	90	2	115	25	12	28	32	1.93
43347319--43347418	27	3.8	26	80	5	110	41	20	15	24	1.90
43347348--43347436	27	3.3	27	80	4	108	38	20	17	23	1.93
43347330--43347436	54	2.0	53	85	5	144	40	19	16	23	1.91
43347823--43347860	2	19.0	2	100	0	76	50	0	0	50	1.00
43347857--43347915	27	2.3	25	85	5	73	22	23	18	35	1.96
43357490--43357682	71	2.8	70	80	6	221	27	10	17	44	1.82
43358619--43358826	67	3.2	64	78	10	188	30	17	29	22	1.97
43362031--43362073	8	5.4	8	82	0	50	46	23	20	9	1.79
43362036--43362073	16	2.4	16	95	0	67	44	23	23	7	1.79
43362289--43362382	28	3.3	29	86	4	122	25	14	34	25	1.94
43362286--43362405	56	2.1	57	83	4	145	29	15	31	24	1.95
43369801--43369928	39	3.3	38	84	7	168	24	28	23	24	2.00
43369803--43369980	79	2.3	79	81	6	200	25	26	22	25	2.00
43372241--43372301	30	2.0	30	83	0	77	31	22	8	37	1.84
43377267--43377437	93	1.8	93	88	2	263	22	19	28	29	1.98
43387695--43387871	40	4.4	40	82	4	216	26	27	22	24	2.00
43390873--43391079	40	5.2	40	88	1	301	22	22	28	26	1.99
43390869--43391079	79	2.7	80	87	2	309	22	22	28	26	1.99
43396605--43396648	22	2.0	22	95	4	81	27	25	25	22	2.00
43399122--43399287	40	4.2	40	87	3	230	22	21	29	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43399122--43399267	78	1.9	78	91	0	238	22	21	30	25	1.99
43408268--43408525	40	6.5	40	92	2	362	23	23	27	25	2.00
43413466--43413534	28	2.5	28	95	2	122	43	27	10	18	1.82
43418182--43418250	28	2.5	28	92	2	113	42	27	11	18	1.85
43421131--43421184	29	2.0	28	82	13	69	40	29	3	25	1.73
43426097--43426162	32	2.1	32	97	0	123	36	18	9	36	1.82
43432433--43432490	18	3.3	18	72	18	68	39	6	18	34	1.78
43432432--43432501	34	2.1	34	100	0	140	42	5	17	34	1.73
43432443--43432498	18	3.2	18	71	19	64	41	5	17	35	1.73
43434320--43434375	20	2.8	19	82	15	60	39	3	1	55	1.28
43443095--43443126	14	2.3	14	94	0	55	15	12	31	40	1.85
43451907--43451944	18	2.1	18	90	9	60	34	0	0	65	0.93
43458384--43458545	50	3.2	50	85	0	234	26	11	19	41	1.86
43465258--43465419	50	3.2	50	96	0	297	24	11	21	42	1.86
43467376--43467532	40	3.9	40	94	0	260	26	22	24	25	2.00
43467384--43467560	80	2.2	80	85	4	232	28	23	23	24	1.99
43470918--43471033	57	2.0	57	93	0	196	41	12	12	34	1.79
43471431--43471456	13	2.0	13	100	0	52	46	15	7	30	1.74
43474326--43474648	48	6.8	48	78	2	292	22	29	19	27	1.98
43474325--43474557	96	2.4	96	89	2	344	22	29	19	28	1.98
43474378--43474648	95	2.8	95	83	3	303	23	30	18	27	1.98
43474328--43474658	143	2.3	144	83	3	398	23	29	19	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43483148--43483242	30	3.2	31	73	5	97	28	15	28	27	1.96
43483828--43484046	48	4.6	48	74	1	181	24	28	19	27	1.99
43483827--43484046	96	2.3	96	81	2	264	24	28	19	27	1.99
43486701--43486814	48	2.4	48	83	2	142	28	22	14	33	1.94
43486816--43486840	5	5.0	5	100	0	50	0	40	20	40	1.52
43488605--43488674	27	2.5	28	95	2	124	28	14	27	30	1.95
43488605--43488686	27	3.0	27	85	8	78	29	15	24	30	1.96
43496365--43496434	27	2.5	28	95	2	124	28	14	27	30	1.95
43496365--43496446	27	3.0	27	85	8	78	29	15	24	30	1.96
43502235--43502365	30	4.5	30	86	8	171	28	25	13	32	1.94
43502234--43502365	58	2.3	58	85	4	176	28	26	13	31	1.94
43509857--43509987	30	4.5	30	86	8	171	28	25	13	32	1.94
43509856--43509987	58	2.3	58	85	4	176	28	26	13	31	1.94
43513325--43513349	5	5.0	5	100	0	50	40	20	40	0	1.52
43515047--43515156	44	2.6	43	75	7	107	32	23	18	25	1.97
43516076--43516162	41	2.1	42	87	6	124	22	13	29	33	1.93
43525801--43525957	43	3.7	43	80	9	169	29	26	19	24	1.98
43528262--43528345	27	3.1	27	83	6	98	32	16	20	30	1.95
43528323--43528643	27	11.9	27	81	3	288	39	19	10	30	1.85
43528881--43528998	41	2.9	41	88	0	182	20	21	30	27	1.98
43531912--43531980	15	4.6	15	83	0	84	11	17	13	57	1.64
43531903--43531990	30	3.0	30	81	8	99	10	17	15	56	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43534225--43534400	46	3.8	46	79	12	216	20	19	29	30	1.97
43534222--43534393	93	1.8	93	96	0	317	20	20	29	29	1.98
43538631--43538707	27	2.9	27	88	0	109	32	15	22	29	1.95
43538704--43538966	81	3.2	81	80	3	276	42	16	8	31	1.79
43538704--43538945	27	8.9	27	79	5	209	44	16	7	30	1.77
43539224--43539341	41	2.9	41	88	2	175	22	18	29	29	1.97
43539488--43539552	22	3.0	22	78	13	62	21	26	20	32	1.97
43542183--43542243	18	3.7	18	77	18	78	19	8	14	57	1.62
43542179--43542243	32	2.0	32	100	0	130	18	9	15	56	1.65
43542179--43542227	14	3.1	15	75	18	55	18	8	16	57	1.63
43546955--43547003	17	2.8	18	74	22	50	24	18	22	34	1.96
43554199--43554247	17	2.8	18	74	22	50	24	18	22	34	1.96
43561443--43561491	17	2.8	18	74	22	50	24	18	22	34	1.96
43563135--43563292	43	3.7	42	80	9	169	25	17	25	31	1.97
43566123--43566156	7	4.7	7	92	7	59	52	0	0	47	1.00
43569578--43569607	12	2.5	12	100	0	60	26	40	26	6	1.81
43572656--43572685	9	3.4	9	95	4	53	80	0	6	13	0.91
43577274--43577440	40	4.2	41	80	5	164	24	26	22	26	2.00
43578266--43578311	17	2.5	19	74	22	53	34	23	17	23	1.96
43584716--43584776	28	2.2	28	81	0	77	31	21	19	27	1.97
43600489--43601157	48	14.0	48	91	0	1018	31	26	6	35	1.81
43603128--43603155	5	5.6	5	100	0	56	0	17	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43609086--43609147	24	2.6	24	89	0	88	32	27	4	35	1.78
43610932--43610970	19	2.1	19	85	0	51	30	12	2	53	1.52
43612659--43612860	43	4.7	43	85	7	286	30	26	17	24	1.97
43612660--43612860	84	2.3	86	89	5	293	30	26	17	24	1.97
43616128--43616164	15	2.5	15	91	8	58	56	16	8	18	1.64
43629097--43629166	27	2.5	28	93	2	115	27	14	28	30	1.95
43629097--43629178	27	3.0	27	84	8	69	28	15	25	30	1.96
43634530--43634787	49	5.3	49	90	2	380	29	30	8	31	1.88
43637770--43637887	41	3.1	41	60	28	98	32	17	28	21	1.96
43637738--43637901	71	2.3	71	98	0	319	35	17	28	19	1.94
43639669--43639835	40	4.2	40	79	6	169	26	22	26	24	2.00
43648550--43648667	41	3.1	41	60	28	98	32	17	28	21	1.96
43648518--43648681	71	2.3	71	100	0	328	35	17	28	18	1.94
43652042--43652193	40	3.8	40	94	0	259	25	27	20	26	1.99
43654316--43654573	49	5.3	49	91	2	389	29	30	8	31	1.87
43660607--43660637	2	15.5	2	100	0	62	48	0	0	51	1.00
43666192--43666437	40	6.2	40	92	1	397	28	25	22	23	1.99
43667855--43667882	13	2.2	13	100	0	56	57	14	0	28	1.38
43674379--43674621	39	6.2	40	93	3	413	28	26	22	23	1.99
43676033--43676057	12	2.1	12	100	0	50	64	16	0	20	1.30
43685122--43685270	80	1.9	80	81	2	183	22	30	24	22	1.99
43685163--43685270	40	2.7	38	85	8	128	21	29	25	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43687554--43687751	40	4.9	40	89	3	267	27	20	25	26	1.99
43687554--43687779	40	5.7	40	87	4	264	26	21	25	26	1.99
43690897--43690967	28	2.5	28	88	4	99	29	12	25	32	1.93
43693393--43693585	40	4.8	40	92	1	309	25	29	23	22	1.99
43709877--43710027	77	1.9	79	93	2	261	23	21	31	23	1.98
43709876--43710027	39	3.9	39	91	2	243	23	21	31	23	1.98
43709877--43710057	39	4.6	39	88	2	238	23	22	30	23	1.99
43717961--43718111	39	3.9	39	91	3	243	23	21	31	23	1.98
43717962--43718141	39	4.6	39	88	2	238	23	22	31	23	1.99
43722563--43722593	2	15.5	2	100	0	62	51	0	0	48	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325