Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  151  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46043225--46043249
12
2.1
12
100
0
50
76
0
16
8
1.02
46043219--46043274
18
3.1
18
76
5
51
69
3
19
7
1.27
46043225--46043306
30
2.7
31
81
5
105
64
1
21
12
1.33
46045518--46045615
30
3.3
30
72
4
90
27
26
16
29
1.97
46048896--46048935
19
2.1
19
85
0
53
25
35
17
22
1.95
46050179--46050221
14
3.1
14
86
0
59
13
30
6
48
1.69
46050489--46050513
13
1.9
13
100
0
50
64
8
0
28
1.22
46050738--46050783
10
4.5
10
78
5
56
41
19
21
17
1.90
46050738--46050793
21
2.8
20
83
2
58
39
17
23
19
1.92
46054725--46054822
30
3.3
30
75
0
97
29
16
26
27
1.97
46057035--46057117
30
2.7
30
81
9
89
13
21
1
63
1.35
46057068--46057123
18
3.1
18
76
5
51
7
19
3
69
1.27
46057093--46057117
12
2.1
12
100
0
50
8
16
0
76
1.02
46057120--46057150
12
2.6
12
94
0
53
29
16
9
45
1.79
46057198--46057254
5
11.0
5
75
20
55
3
17
1
77
1.00
46057198--46057254
16
3.7
14
82
15
60
3
17
1
77
1.00
46057198--46057265
21
3.2
21
76
15
61
2
17
2
76
1.04
46059748--46059844
30
3.2
30
73
2
97
29
16
25
27
1.97
46060845--46060947
47
2.2
47
98
0
197
34
23
16
25
1.95
46062334--46062426
40
2.3
40
87
3
134
25
13
9
50
1.72
46062591--46062624
11
3.0
11
91
4
50
17
0
23
58
1.38
46071414--46071510
30
3.2
30
71
8
90
27
15
28
27
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46075468--46075515
14
3.4
14
85
0
60
43
6
31
18
1.75
46078155--46078181
10
2.7
10
100
0
54
40
29
11
18
1.85
46084974--46085000
10
2.7
10
100
0
54
40
29
11
18
1.85
46090409--46090452
18
2.4
18
92
3
70
11
4
4
79
1.02
46090409--46090453
19
2.4
19
88
7
65
11
4
4
80
1.01
46090820--46090867
14
3.4
14
85
0
60
43
6
31
18
1.75
46099998--46100164
40
4.2
40
78
6
160
25
22
27
24
2.00
46107364--46107530
40
4.2
40
82
2
185
24
26
22
26
2.00
46114818--46114984
40
4.2
40
79
2
167
23
26
22
27
1.99
46131018--46131092
29
2.6
29
89
4
107
26
16
32
25
1.96
46138929--46139003
29
2.6
29
89
4
107
26
16
32
25
1.96
46142708--46142733
12
2.2
12
100
0
52
0
15
0
84
0.62
46150950--46151125
46
3.8
46
75
15
164
22
21
27
28
1.99
46150946--46151116
93
1.8
93
89
0
270
22
21
28
28
1.99
46154596--46154763
40
4.2
40
80
2
178
26
27
20
25
1.99
46158172--46158218
24
2.0
24
100
0
94
46
0
4
48
1.21
46159372--46159528
43
3.7
43
77
13
155
24
16
25
33
1.96
46170151--46170211
29
2.1
28
87
3
86
29
31
13
26
1.93
46174508--46174561
25
2.2
25
82
0
63
22
25
24
27
2.00
46176114--46176226
43
2.7
42
82
6
131
22
20
25
31
1.98
46184907--46184934
2
14.0
2
100
0
56
50
0
0
50
1.00
46185198--46185222
7
3.6
7
100
0
50
88
0
0
12
0.53
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46186428--46186457
12
2.5
12
100
0
60
50
0
13
36
1.42
46193046--46193198
42
3.7
41
85
6
191
32
23
13
30
1.93
46199583--46199638
15
3.7
15
83
7
78
10
16
12
60
1.58
46199579--46199638
30
2.0
30
90
6
95
10
15
16
58
1.63
46201996--46202176
46
3.9
46
81
9
233
20
21
29
27
1.98
46201998--46202168
93
1.8
93
96
0
315
20
22
29
27
1.98
46205090--46205305
48
4.5
48
77
4
220
28
16
26
27
1.97
46205086--46205305
96
2.3
96
90
1
361
28
17
26
27
1.97
46206779--46206848
27
2.5
28
88
2
106
31
25
14
28
1.95
46214697--46214766
27
2.5
28
88
2
106
31
25
14
28
1.95
46217670--46217874
40
5.2
40
82
5
222
26
26
21
25
1.99
46217661--46217874
78
2.7
79
80
5
220
26
26
21
26
2.00
46225710--46225916
40
5.2
40
84
3
249
26
27
21
25
1.99
46235772--46235860
27
3.3
26
84
6
99
40
16
11
31
1.84
46235866--46236020
81
1.9
80
89
1
238
29
26
7
36
1.84
46235866--46236021
27
5.8
27
91
0
215
28
26
7
36
1.84
46235853--46236167
27
11.7
27
80
3
143
34
23
8
32
1.86
46235853--46236032
54
3.4
54
80
3
175
32
26
7
34
1.84
46235853--46236032
81
2.2
81
78
8
222
32
26
7
34
1.84
46236000--46236139
54
2.6
54
84
4
158
38
21
9
30
1.85
46236122--46236226
27
3.8
27
75
9
86
41
20
9
28
1.83
46236270--46236347
27
2.9
27
77
11
88
37
21
19
21
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46237152--46237265
26
4.4
26
94
0
183
28
21
24
25
1.99
46237420--46237511
42
2.2
42
92
0
148
29
14
21
34
1.93
46237535--46237613
31
2.5
31
89
0
131
29
16
26
27
1.97
46245736--46245870
56
2.4
56
88
2
209
35
23
12
28
1.91
46252621--46252811
56
3.4
56
89
0
301
34
24
13
28
1.93
46253757--46253814
23
2.6
23
89
5
93
43
13
0
43
1.44
46255049--46255078
12
2.5
12
94
0
51
53
0
10
36
1.35
46255904--46255928
11
2.3
11
100
0
50
76
0
0
24
0.80
46259292--46259478
71
2.7
68
93
5
281
18
28
18
34
1.95
46259315--46259478
71
2.3
71
100
0
328
18
28
17
35
1.94
46259315--46259512
71
2.8
70
92
3
276
20
28
17
33
1.95
46261578--46261789
27
7.9
28
80
5
190
34
18
21
25
1.96
46261622--46261790
53
3.2
53
78
7
182
36
18
19
25
1.95
46261927--46262004
27
2.9
26
83
7
86
23
23
20
33
1.97
46265223--46265266
21
2.2
20
87
4
61
27
20
15
36
1.93
46266722--46266753
12
2.7
12
100
0
64
25
50
18
6
1.70
46268244--46268307
24
2.6
26
80
12
80
20
32
18
28
1.96
46268243--46268322
24
3.3
24
74
11
74
18
30
20
31
1.96
46268291--46268349
24
2.4
25
80
8
68
20
23
20
35
1.96
46268365--46268461
25
3.9
24
71
4
59
21
24
20
32
1.97
46268366--46268473
50
2.2
49
81
5
119
23
25
19
31
1.98
46277470--46277539
27
2.6
27
95
2
122
30
27
14
28
1.95
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46280359--46280682
46
6.8
47
73
12
243
22
30
17
29
1.97
46280362--46280686
47
6.8
47
72
16
215
22
30
17
29
1.97
46280362--46280725
94
3.8
94
79
9
359
22
29
18
29
1.97
46280363--46280725
47
7.7
46
71
17
171
22
29
18
29
1.97
46280359--46280687
141
2.3
142
77
9
339
22
30
17
29
1.97
46282767--46282879
56
2.0
56
96
0
208
34
17
18
29
1.94
46288138--46288537
48
8.5
46
73
14
181
23
30
16
29
1.96
46288033--46288537
47
10.7
47
72
15
293
23
29
17
28
1.97
46288032--46288537
94
5.4
93
74
15
366
23
29
17
28
1.97
46306900--46306928
2
14.5
2
100
0
58
51
0
0
48
1.00
46310324--46310372
24
2.0
24
96
0
89
32
0
18
48
1.48
46311030--46311067
13
2.9
13
85
14
60
0
44
0
55
0.99
46312514--46312604
17
5.4
16
76
15
76
15
3
4
76
1.07
46312540--46312591
24
2.2
24
82
6
61
15
3
1
78
0.98
46313182--46313216
17
2.1
17
94
0
61
22
17
20
40
1.92
46318895--46319441
239
2.3
237
81
8
607
43
7
10
38
1.68
46320137--46320170
18
1.9
17
88
5
50
73
0
8
17
1.08
46322743--46322802
21
2.8
20
78
12
66
70
0
0
30
0.88
46323304--46323430
65
2.0
65
79
6
141
37
4
10
47
1.59
46324066--46324186
55
2.2
55
80
0
134
20
37
24
17
1.94
46325996--46326100
48
2.2
48
100
0
210
24
33
5
36
1.79
46326208--46326378
93
1.8
93
94
0
306
27
29
22
21
1.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
46326200--46326380
46
3.9
46
80
9
224
27
29
21
21
1.99
46329486--46329666
39
4.6
39
88
0
209
20
22
26
29
1.99
46329486--46329672
78
2.4
79
83
1
241
21
23
26
28
1.99
46331164--46331248
43
2.0
43
97
0
161
32
9
15
42
1.79
46332287--46332426
60
2.3
60
90
4
212
35
26
12
25
1.92
46337685--46337731
20
2.5
20
90
10
73
51
8
19
21
1.73
46340514--46340624
58
1.9
59
90
1
179
39
2
9
47
1.51
46342695--46342751
27
2.1
27
100
0
114
29
17
14
38
1.89
46343144--46343355
46
4.6
46
85
7
270
23
30
19
26
1.98
46343144--46343358
94
2.3
90
83
8
272
24
30
19
26
1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325