genome.fa.s4.2.7.7.80.10.50.1000.58.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  58  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15283127--15283182	20	2.8	20	77	0	67	35	23	30	10	1.89
15284228--15284274	3	15.7	3	100	0	94	34	0	0	65	0.93
15286315--15286339	13	1.9	13	100	0	50	68	0	0	32	0.90
15286314--15286360	20	2.4	21	83	16	57	61	4	0	34	1.15
15286693--15286747	2	29.0	2	76	10	53	54	5	0	40	1.23
15286693--15286744	22	2.4	23	87	12	83	55	5	0	38	1.24
15287267--15287301	11	3.2	11	88	12	54	45	0	54	0	0.99
15288197--15288295	44	2.2	44	82	3	110	30	15	16	38	1.89
15288584--15288934	72	4.7	72	90	4	472	33	19	16	29	1.95
15288914--15288948	14	2.5	14	95	0	61	60	8	14	17	1.58
15288774--15289641	163	5.6	157	84	9	833	34	19	16	28	1.94
15289129--15289640	72	6.8	72	78	13	496	33	19	16	30	1.94
15289318--15289878	163	3.5	162	93	2	916	33	20	17	28	1.95
15288559--15289807	544	2.3	544	94	2	2139	33	19	17	29	1.95
15289793--15289821	14	2.1	14	100	0	58	65	6	13	13	1.45
15296416--15296471	25	2.2	26	78	9	62	37	7	1	53	1.39
15298366--15298502	9	14.6	9	73	8	112	45	21	2	31	1.64
15298366--15298500	57	2.4	57	83	0	162	45	21	2	31	1.64
15298371--15298500	48	2.7	48	79	3	145	45	21	2	30	1.64
15304073--15304133	21	2.9	21	95	0	104	27	21	50	0	1.49
15304459--15304812	43	8.2	42	75	7	244	21	20	27	30	1.98
15304701--15304816	42	2.8	41	82	4	133	21	19	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15304609--15304836	86	2.7	83	77	10	221	24	23	25	27	2.00
15304615--15304859	43	5.7	41	76	11	165	23	22	25	28	1.99
15304609--15304860	85	3.0	81	74	13	215	23	21	25	28	1.99
15305920--15305971	7	7.4	7	79	16	63	34	13	0	51	1.41
15305919--15305971	14	3.7	15	82	14	76	35	13	0	50	1.41
15305918--15305978	21	3.0	20	82	4	77	34	16	0	49	1.46
15308446--15308477	9	3.6	9	91	0	55	53	15	0	31	1.43
15318880--15321642	693	4.0	693	98	0	5213	34	18	15	30	1.92
15330614--15330646	2	16.5	2	100	0	66	48	0	0	51	1.00
15336762--15336925	3	54.7	3	68	18	83	31	6	2	60	1.34
15336927--15336958	17	1.9	16	93	6	55	34	0	12	53	1.39
15336915--15336959	21	2.2	20	84	11	56	35	0	11	53	1.37
15337085--15337282	44	4.4	45	76	12	142	34	3	4	57	1.36
15337137--15337195	17	3.3	18	79	18	61	33	0	3	62	1.12
15337156--15337192	10	4.0	10	83	16	53	35	0	0	64	0.94
15337177--15337284	24	4.8	22	74	14	80	36	4	2	56	1.34
15337144--15337280	21	6.2	22	76	18	99	34	3	2	59	1.30
15337282--15337317	18	1.9	19	88	5	56	19	0	27	52	1.46
15337463--15337524	29	2.1	30	81	3	72	37	6	4	51	1.49
15349020--15349125	45	2.4	45	96	3	198	44	16	22	16	1.86
15349891--15350062	86	2.0	85	81	3	202	25	15	20	38	1.92
15349970--15350432	75	6.3	72	80	9	422	29	17	19	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15350356--15350515	87	1.8	87	82	2	205	28	17	19	34	1.95
15352355--15352518	3	54.7	3	66	18	65	30	6	3	59	1.38
15352357--15352402	23	2.0	23	83	8	58	28	6	0	65	1.17
15352520--15352551	17	1.9	16	93	6	55	34	0	12	53	1.39
15352508--15352552	21	2.2	20	84	11	56	35	0	11	53	1.37
15352769--15352866	21	4.7	21	75	18	64	34	5	3	57	1.36
15352750--15352868	22	5.5	22	77	14	113	34	4	2	58	1.31
15352730--15352809	36	2.2	36	80	12	85	33	2	3	60	1.28
15352749--15352868	44	2.8	43	82	10	147	35	4	2	58	1.31
15352954--15353082	24	5.2	24	73	20	88	32	7	5	54	1.52
15353050--15353115	33	2.0	34	90	3	107	36	6	6	51	1.51
15354865--15354936	3	24.0	3	100	0	144	66	0	0	33	0.92
15355876--15355913	19	2.0	19	100	0	76	31	26	21	21	1.98
15358460--15358523	32	2.0	32	100	0	128	50	6	9	34	1.60
15359244--15359359	54	2.2	54	90	4	184	31	2	3	62	1.25
15360259--15360286	13	2.2	13	100	0	56	60	0	0	39	0.97
15360307--15360338	7	4.6	7	96	0	55	31	0	9	59	1.29
15360836--15360901	30	2.2	30	91	0	105	33	45	15	6	1.70
15363306--15363416	47	2.4	47	80	6	127	35	22	16	26	1.95
15370505--15370615	47	2.4	47	81	6	136	34	22	17	26	1.96
15374112--15374356	125	2.0	126	87	2	359	26	17	17	37	1.93
15374413--15374496	28	2.9	28	84	5	114	40	16	1	41	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15374535--15374586	22	2.4	22	90	0	77	38	15	0	46	1.46
15374499--15374681	100	1.8	100	89	0	285	45	14	1	38	1.54
15374595--15374643	22	2.3	22	89	3	73	51	16	0	32	1.45
15374551--15374694	74	1.9	75	81	11	177	43	15	1	38	1.56
15374715--15374781	22	2.8	24	80	11	84	41	20	1	35	1.62
15381441--15381483	18	2.4	18	84	0	50	34	2	0	62	1.08
15382940--15382999	31	1.9	31	93	0	102	43	10	11	35	1.75
15387021--15387063	17	2.5	18	81	7	54	74	0	4	20	1.00
15387373--15387409	13	2.8	13	91	0	56	13	35	43	8	1.74
15387552--15387680	55	2.3	55	87	1	186	17	24	31	27	1.97
15388786--15388818	16	2.1	16	100	0	66	24	39	6	30	1.79
15391656--15391692	5	7.2	5	96	3	65	56	0	0	43	0.99
15391715--15391751	8	4.6	8	100	0	74	62	0	0	37	0.96
15396075--15396121	5	9.4	5	100	0	94	59	0	0	40	0.97
15396144--15396172	8	3.6	8	100	0	58	62	0	0	37	0.96
15412979--15413044	33	2.0	33	93	0	114	36	22	7	33	1.83
15430467--15430538	32	2.3	31	77	13	76	41	2	19	36	1.66
15432954--15433025	36	2.0	36	83	0	90	19	15	9	55	1.67
15443940--15443965	7	3.7	7	100	0	52	42	26	0	30	1.56
15443939--15444000	14	4.4	14	75	20	58	35	25	0	38	1.56
15443960--15444001	21	2.0	21	86	9	59	30	26	0	42	1.55
15445927--15445983	30	1.9	29	92	3	96	14	10	12	63	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15454946--15454991	23	2.0	24	86	4	67	52	28	2	17	1.56
15456990--15457111	35	3.3	34	65	20	84	31	22	18	26	1.97
15456984--15457179	75	2.6	74	85	9	254	30	20	22	26	1.99
15462172--15462307	69	2.0	68	97	1	254	16	24	18	41	1.90
15462370--15462428	17	3.5	16	76	17	57	28	0	3	67	1.06
15462369--15462432	8	7.9	8	80	13	60	26	0	3	70	1.02
15462369--15462425	25	2.3	25	84	6	71	28	0	3	68	1.06
15462373--15462447	32	2.3	32	88	8	109	26	0	5	68	1.11
15462390--15462449	16	3.8	16	69	18	54	26	0	6	66	1.16
15462387--15462448	17	3.8	17	71	16	58	25	0	6	67	1.14
15469167--15469346	50	3.7	50	67	14	133	26	26	18	28	1.98
15471432--15471487	24	2.3	25	78	9	62	69	5	25	0	1.09
15477800--15477860	27	2.3	26	83	8	86	34	18	22	24	1.96
15479500--15479603	6	17.0	6	69	15	70	47	14	18	20	1.83
15479500--15479603	31	3.4	31	81	4	113	47	14	18	20	1.83
15479995--15480135	27	5.3	27	82	1	176	24	21	19	34	1.96
15479999--15480135	53	2.6	54	88	3	206	24	22	18	35	1.96
15479994--15480189	80	2.4	81	81	5	220	26	19	19	35	1.95
15480117--15480244	54	2.4	53	88	2	166	29	12	20	37	1.89
15480117--15480245	27	4.8	27	77	3	134	29	12	20	37	1.89
15480119--15480518	27	14.8	26	73	13	132	31	9	23	36	1.87
15480238--15480355	54	2.2	54	85	0	155	34	6	26	32	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15480373--15480513	53	2.7	52	82	3	158	29	8	22	39	1.84
15482029--15482064	11	3.1	12	88	8	56	30	33	0	36	1.58
15483356--15483541	40	4.4	40	74	12	142	30	26	15	27	1.96
15484932--15485077	31	4.7	31	86	0	195	23	23	15	36	1.94
15485297--15485366	25	2.8	25	91	0	104	27	24	25	22	2.00
15485414--15485461	11	4.6	11	80	12	57	33	16	14	35	1.89
15502272--15502307	18	2.0	18	88	0	54	8	25	13	52	1.68
15502556--15502605	18	2.8	18	90	3	75	14	30	38	18	1.89
15507439--15507470	16	2.1	15	94	5	55	15	6	0	78	0.95
15509507--15509603	46	2.1	46	98	0	185	37	8	24	29	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325