genome.fa.s4.2.7.7.80.10.50.1000.162.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  162  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49768574--49768734	43	3.8	43	78	8	143	29	15	23	31	1.95
49775771--49775895	48	2.6	47	86	5	171	32	23	16	28	1.96
49790246--49790361	29	4.0	29	100	0	232	31	13	27	27	1.94
49798360--49798475	29	4.0	29	100	0	232	31	13	27	27	1.94
49800497--49800672	46	3.8	46	75	10	160	30	28	19	22	1.98
49804401--49804477	38	2.0	38	92	0	127	28	28	14	28	1.95
49808549--49808715	40	4.2	40	79	6	169	26	22	26	24	2.00
49816484--49816650	40	4.2	40	79	6	169	26	22	26	24	2.00
49819656--49819822	40	4.2	40	79	6	169	26	22	26	24	2.00
49827635--49827801	40	4.2	40	79	6	169	26	22	26	24	2.00
49832544--49832762	39	5.6	39	89	2	298	22	31	21	24	1.98
49838275--49838504	49	4.8	48	76	6	209	28	19	26	25	1.98
49840836--49840896	30	2.0	30	83	0	77	31	22	6	39	1.80
49845556--49845704	61	2.4	61	87	2	210	34	21	13	30	1.92
49846858--49846885	2	14.0	2	100	0	56	50	0	0	50	1.00
49847606--49847749	40	3.6	40	88	2	211	25	28	20	25	1.99
49849002--49849042	21	2.0	21	85	9	57	36	26	4	31	1.78
49849013--49849052	21	1.9	21	84	0	53	37	25	2	35	1.69
49854870--49854974	40	2.6	40	84	3	140	25	22	27	23	2.00
49857049--49857089	20	2.0	20	100	0	82	46	19	0	34	1.50
49864940--49865110	40	4.3	39	77	10	159	28	21	26	23	1.99
49873043--49873213	40	4.3	39	77	10	159	28	21	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49876315--49876366	25	2.1	25	96	0	95	46	19	1	32	1.61
49879276--49879451	46	3.8	46	78	11	182	29	27	21	22	1.99
49879283--49879451	93	1.8	93	89	2	268	28	27	21	22	1.99
49879327--49879463	47	3.0	46	71	16	122	29	27	19	22	1.98
49883342--49883517	46	3.8	45	81	10	212	21	21	29	28	1.98
49883338--49883509	93	1.8	93	94	0	308	20	21	30	27	1.98
49888838--49889048	43	4.9	42	80	9	212	21	20	28	28	1.98
49895382--49895548	46	3.6	45	76	10	167	22	20	28	28	1.98
49895378--49895548	93	1.8	93	91	0	279	22	20	29	28	1.98
49899370--49899495	39	3.2	39	94	0	207	27	30	20	21	1.98
49901776--49901818	20	2.1	20	86	4	59	20	2	4	72	1.14
49907378--49907502	43	2.9	43	90	2	180	32	28	15	24	1.95
49907387--49907520	43	3.1	43	81	10	159	30	28	15	25	1.96
49912113--49912145	17	1.9	17	100	0	66	57	6	30	6	1.47
49913296--49913345	24	2.1	24	100	0	100	44	4	0	52	1.20
49913304--49913344	12	3.4	12	79	0	55	39	4	0	56	1.21
49913960--49914086	41	3.1	41	89	4	193	19	24	22	33	1.97
49914992--49915017	13	2.0	13	100	0	52	38	23	38	0	1.55
49919992--49920020	2	14.5	2	100	0	58	48	0	0	51	1.00
49920337--49920374	16	2.3	17	83	16	53	65	0	2	31	1.06
49921480--49921517	18	2.1	18	85	9	51	76	5	15	2	1.08
49922540--49922912	47	8.6	47	73	18	315	29	15	24	31	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49922637--49922950	38	7.6	38	66	24	147	29	14	24	30	1.95
49922582--49922955	85	4.4	85	90	2	567	29	14	24	31	1.95
49928178--49928641	38	11.0	38	69	19	253	31	15	22	30	1.95
49928215--49928596	47	8.7	47	73	15	323	31	15	21	31	1.94
49928258--49928634	85	4.4	85	91	0	619	31	15	22	30	1.95
49930758--49930973	44	4.7	44	69	14	146	28	22	18	30	1.98
49930697--49930973	143	1.9	143	85	1	376	27	21	18	32	1.97
49943133--49943170	16	2.3	17	83	16	53	65	0	2	31	1.06
49959257--49959463	73	2.8	73	93	0	342	28	19	27	25	1.99
49959403--49959572	48	3.6	47	82	4	182	25	15	29	28	1.96
49965424--49965567	75	1.9	75	89	0	225	28	22	13	36	1.91
49968102--49968150	25	2.0	25	83	0	62	24	20	20	34	1.96
49971134--49971160	9	3.0	9	100	0	54	44	0	22	33	1.53
49972588--49972767	13	13.4	13	65	16	82	41	2	20	35	1.66
49972588--49972767	26	6.7	26	70	14	91	41	2	20	35	1.66
49973466--49973513	20	2.3	21	79	13	55	27	0	18	54	1.44
49994487--49994578	34	2.8	32	77	11	78	29	25	23	21	1.99
49994941--49995020	27	3.0	27	81	0	97	26	11	20	42	1.85
49995054--49995156	27	3.9	27	85	1	136	39	13	14	32	1.85
49995054--49995177	54	2.3	54	86	4	162	37	14	14	33	1.87
49997347--49997569	40	5.6	40	87	4	306	24	23	26	26	2.00
49997347--49997569	79	2.8	80	87	6	317	24	23	26	26	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50016973--50017215	24	10.1	24	97	0	423	20	18	25	36	1.95
50024928--50025151	40	5.6	40	84	4	281	25	21	25	27	2.00
50024935--50025151	83	2.7	79	84	8	260	24	21	26	27	1.99
50029136--50029227	34	2.8	33	77	11	89	29	23	23	22	1.99
50029626--50029732	27	4.0	27	86	2	135	24	15	18	41	1.90
50029655--50029742	27	3.3	26	82	9	88	22	14	17	45	1.85
50029627--50029744	54	2.2	54	83	3	148	23	15	17	43	1.87
50032489--50032531	2	21.5	2	95	0	77	46	0	2	51	1.13
50036871--50036895	13	1.9	13	100	0	50	12	32	40	16	1.84
50043051--50043090	21	1.9	21	84	0	53	27	5	0	67	1.11
50049708--50049780	29	2.5	29	93	0	101	26	31	16	26	1.96
50057841--50057913	29	2.5	29	93	0	101	26	31	16	26	1.96
50062419--50062449	12	2.6	12	94	0	53	64	12	6	16	1.47
50064288--50064335	23	2.1	23	96	0	87	27	10	4	58	1.49
50065420--50065596	52	3.5	51	86	4	198	28	15	28	26	1.96
50065424--50065557	52	2.6	51	90	3	200	29	14	27	29	1.95
50066087--50066119	13	2.6	13	90	4	50	48	12	0	39	1.40
50068528--50068695	40	4.2	40	79	3	167	25	22	27	25	2.00
50068528--50068679	80	1.9	80	83	2	198	25	22	27	24	2.00
50072243--50072328	6	15.8	5	73	20	59	76	1	4	17	1.01
50072263--50072329	6	11.5	6	85	3	84	79	1	4	14	0.97
50072253--50072329	18	4.5	17	82	14	86	76	1	5	16	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50072243--50072328	12	7.4	11	79	12	84	76	1	4	17	1.01
50078069--50078135	27	2.4	28	90	2	100	29	11	26	31	1.92
50085789--50086005	40	5.6	39	87	4	289	24	22	31	22	1.98
50085789--50085975	39	4.9	39	89	5	283	24	21	31	22	1.98
50093235--50093360	39	3.2	39	94	2	209	23	20	31	23	1.98
50101345--50101486	40	3.5	40	83	1	124	27	23	26	21	1.99
50101383--50101512	40	3.3	39	78	11	147	23	23	26	25	2.00
50103267--50103484	40	5.5	40	87	4	284	22	22	28	25	1.99
50109311--50109364	2	27.0	2	88	0	81	50	1	3	44	1.30
50110003--50110076	29	2.6	29	86	4	96	25	16	33	24	1.95
50114743--50114819	24	3.2	24	90	0	118	35	3	41	19	1.70
50116247--50116357	27	4.2	26	87	5	150	16	24	22	36	1.94
50119260--50119300	18	2.3	18	95	0	73	24	29	34	12	1.91
50121524--50121629	40	2.7	40	83	5	135	22	27	26	23	2.00
50129135--50129235	40	2.5	40	87	6	143	20	27	25	25	1.99
50133313--50133473	29	5.6	29	90	0	223	29	14	31	24	1.95
50133309--50133493	87	2.1	87	80	1	219	29	15	31	24	1.95
50141417--50141576	29	5.6	29	87	1	198	28	14	31	25	1.95
50141417--50141596	87	2.1	85	78	2	189	28	15	31	25	1.95
50143046--50143115	27	2.6	27	95	2	122	30	27	14	28	1.95
50150833--50150902	27	2.6	27	95	2	122	30	27	14	28	1.95
50153684--50153797	44	2.6	44	87	6	176	25	28	24	21	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
50161631--50161803	45	3.9	45	92	1	260	27	27	19	25	1.99
50173854--50173908	22	2.5	21	77	8	56	43	0	9	47	1.35
50188438--50188560	37	3.3	37	98	0	237	23	31	19	25	1.98
50188605--50189065	48	9.6	48	98	0	888	31	27	8	33	1.86
50190573--50190597	13	1.9	13	100	0	50	36	16	16	32	1.90
50192741--50192923	40	4.6	40	94	1	307	25	27	21	25	1.99
50192912--50193040	40	3.2	40	80	5	145	27	28	20	24	1.99
50193910--50194031	37	3.3	37	96	0	226	24	31	18	25	1.98
50194076--50194681	48	12.6	48	97	0	1140	31	27	7	33	1.85
50196190--50196214	13	1.9	13	100	0	50	36	16	16	32	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325