genome.fa.s4.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  20  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4735593--4735752	78	2.1	76	94	2	275	35	24	6	34	1.81
4740281--4740318	17	2.2	17	90	4	58	31	0	5	63	1.17
4750158--4750183	2	13.0	2	100	0	52	50	0	0	50	1.00
4750349--4750389	10	4.1	10	79	20	50	68	0	0	31	0.90
4750346--4750386	19	2.0	21	90	9	68	68	0	0	31	0.90
4751219--4751596	159	2.3	161	90	4	602	49	11	4	34	1.59
4751219--4751596	81	4.7	80	92	3	591	49	11	4	34	1.59
4763707--4763756	23	2.1	24	85	10	68	50	2	2	46	1.24
4765904--4765931	2	14.0	2	100	0	56	50	0	0	50	1.00
4773863--4774055	96	2.0	96	98	0	377	35	17	11	35	1.85
4777253--4777282	15	1.9	16	93	6	53	70	3	6	20	1.25
4778493--4778554	32	1.9	32	84	12	83	48	6	3	41	1.45
4782179--4782246	30	2.3	30	82	5	75	27	20	4	47	1.69
4782760--4782795	17	2.1	17	100	0	72	30	36	11	22	1.89
4782820--4782866	20	2.2	21	81	14	60	38	0	2	59	1.09
4790200--4790342	71	2.0	71	98	0	277	34	6	15	42	1.74
4790286--4790320	16	2.1	17	89	5	54	48	2	8	40	1.49
4792199--4792239	18	2.3	18	84	12	50	14	14	2	68	1.32
4792310--4792343	3	11.0	3	87	6	50	32	2	2	61	1.26
4792283--4792343	28	2.2	28	82	11	72	31	3	6	59	1.39
4792363--4792400	19	2.1	19	85	5	51	28	0	7	63	1.23
4794290--4794369	24	3.3	23	76	13	63	40	0	2	57	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4794305--4794387	3	29.0	3	79	13	95	37	0	1	61	1.04
4794512--4794563	3	17.7	3	80	11	63	36	0	1	61	1.07
4794511--4794562	13	3.8	13	78	14	52	36	0	1	61	1.07
4798398--4798442	21	2.1	21	83	4	54	40	17	6	35	1.76
4805883--4805916	15	2.3	15	89	0	50	29	8	20	41	1.82
4805934--4805972	14	2.8	14	81	14	53	33	2	20	43	1.65
4808730--4808822	45	2.1	45	93	0	159	38	13	9	37	1.78
4811516--4811574	29	2.0	30	86	3	84	33	3	10	52	1.52
4811841--4811903	23	2.7	23	82	7	65	69	3	3	23	1.17
4811982--4812048	23	3.0	22	81	16	75	52	2	5	38	1.41
4812100--4812151	19	2.8	18	80	8	59	36	1	1	59	1.19
4812083--4812141	20	3.1	19	78	9	59	32	3	1	62	1.21
4812121--4812205	33	2.5	35	82	9	111	40	0	3	56	1.16
4818566--4818600	18	1.9	18	88	0	52	28	25	14	31	1.95
4821289--4821360	36	2.0	36	100	0	144	30	16	19	33	1.94
4821881--4822154	139	2.0	139	93	1	469	25	14	17	41	1.88
4836506--4836565	31	1.9	31	86	0	84	33	6	18	41	1.76
4838253--4838286	17	1.9	18	88	5	52	29	5	14	50	1.67
4838996--4839055	28	2.1	28	81	0	66	41	11	15	31	1.82
4858333--4858469	62	2.2	63	82	8	165	47	8	13	30	1.72
4861708--4861952	126	1.9	126	92	2	411	39	14	16	29	1.88
4862053--4862102	13	4.2	12	80	14	52	68	0	4	28	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4862412--4862445	11	3.0	11	91	4	50	67	0	0	32	0.91
4862414--4862445	16	2.1	15	94	5	55	68	0	0	31	0.90
4862423--4862555	60	2.2	63	81	9	150	63	6	4	25	1.39
4862837--4862909	18	4.0	18	71	16	69	16	0	56	27	1.41
4862848--4862954	37	3.4	30	73	21	85	17	0	49	31	1.53
4862851--4862925	37	2.0	37	100	0	150	16	0	54	29	1.42
4863170--4863779	133	4.7	132	84	5	704	27	21	20	30	1.98
4863446--4863647	43	4.6	43	69	18	146	26	24	19	29	1.98
4871501--4871545	21	2.1	21	88	8	65	15	20	24	40	1.91
4874129--4874303	46	3.8	45	76	7	172	29	29	18	21	1.97
4874137--4874308	93	1.8	93	89	0	272	29	30	19	21	1.97
4875884--4876127	126	1.9	126	95	0	443	40	14	16	28	1.88
4876228--4876277	13	4.2	12	80	14	52	68	0	4	28	1.08
4876587--4876624	15	2.4	16	86	8	60	68	0	0	31	0.90
4877032--4877106	37	2.0	37	94	0	132	18	0	52	29	1.46
4880665--4880796	60	2.2	60	81	4	151	23	25	9	42	1.83
4882638--4882670	16	2.0	17	88	5	50	33	0	3	63	1.10
4884039--4884198	26	6.2	26	91	0	257	33	6	23	36	1.81
4884039--4884198	52	3.1	52	95	0	284	33	6	23	36	1.81
4891100--4891155	26	2.2	26	96	0	103	30	7	25	37	1.82
4894174--4894233	3	19.0	3	84	6	75	33	3	1	61	1.22
4894152--4894219	30	2.3	27	77	18	73	30	5	2	60	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4894404--4894477	21	3.5	21	79	7	60	33	8	4	54	1.49
4894426--4894477	21	2.5	22	84	9	65	32	5	3	57	1.40
4894837--4894877	22	1.9	21	85	14	57	36	2	4	56	1.34
4895929--4896012	26	3.2	26	96	0	150	33	4	25	36	1.77
4902217--4902273	7	8.0	7	84	9	71	80	1	17	0	0.79
4904942--4904976	17	2.1	17	88	0	52	74	0	0	25	0.82
4907438--4907519	26	3.2	26	100	0	164	30	7	26	35	1.84
4909002--4909054	26	2.0	26	85	7	72	39	22	11	26	1.88
4914466--4914499	9	3.8	9	88	0	50	44	2	35	17	1.64
4922707--4922742	18	2.0	18	88	0	54	11	8	8	72	1.29
4922641--4922817	93	1.9	90	88	5	266	25	14	20	39	1.91
4922725--4923034	73	4.2	73	85	4	426	28	16	20	34	1.94
4922725--4923026	147	2.0	147	86	4	421	29	16	21	32	1.95
4923053--4923238	100	1.9	100	91	0	309	28	18	18	34	1.94
4923209--4923244	14	2.7	13	83	8	54	30	13	8	47	1.73
4923256--4923300	21	2.1	21	100	0	90	17	8	42	31	1.80
4923627--4923740	44	2.6	44	88	0	165	22	21	28	27	1.99
4925442--4925507	12	5.5	12	90	3	89	30	0	3	66	1.06
4925442--4925496	3	18.3	3	96	0	101	30	0	1	67	1.01
4925741--4925787	21	2.2	21	85	7	60	31	4	4	59	1.36
4925870--4925939	31	2.3	29	77	13	70	32	2	2	61	1.25
4926146--4926186	22	1.9	21	85	14	57	36	2	4	56	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4939528--4939588	19	3.3	19	93	6	108	37	8	16	37	1.78
4940123--4940171	26	2.0	25	88	8	73	20	6	8	65	1.41
4945716--4945763	20	2.6	18	80	9	51	45	0	0	54	0.99
4948164--4948203	2	20.0	2	94	0	71	50	2	0	47	1.14
4950236--4950507	3	90.7	3	67	16	57	27	6	4	61	1.42
4950424--4950477	23	2.3	23	83	0	72	31	7	3	57	1.44
4950266--4950507	3	81.7	3	67	16	58	25	7	4	61	1.44
4950586--4950634	3	16.3	3	86	0	71	32	4	2	61	1.26
4956124--4956259	26	5.2	26	90	0	218	33	2	22	40	1.69
4957738--4957790	26	2.0	27	85	7	74	33	20	16	28	1.95
4962446--4962570	61	2.0	64	89	7	195	32	17	12	36	1.88
4962714--4962863	47	3.3	47	66	20	129	26	18	28	27	1.98
4962680--4962872	88	2.2	88	94	0	341	25	18	27	29	1.98
4963001--4963176	44	4.0	44	73	8	169	31	15	25	27	1.95
4962906--4963176	132	2.1	132	91	0	434	32	16	23	28	1.96
4963179--4963846	87	7.8	85	83	6	780	35	21	22	20	1.96
4963179--4963842	169	3.9	169	88	4	836	35	21	22	20	1.96
4964491--4964533	22	2.0	22	86	9	61	30	6	27	34	1.83
4965268--4965541	3	91.7	3	66	16	54	27	6	4	61	1.42
4965456--4965509	23	2.3	23	83	0	72	31	7	3	57	1.44
4965298--4965541	3	82.7	3	66	16	55	25	7	4	61	1.43
4965620--4965689	3	23.3	3	94	0	122	34	2	0	62	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4968223--4968507	136	2.1	136	96	1	527	31	24	18	24	1.98
4970275--4970384	26	4.2	26	97	0	184	36	24	5	33	1.79
4974191--4974401	64	3.2	64	62	20	151	29	26	18	26	1.98
4974157--4974443	137	2.1	137	98	0	556	31	25	19	24	1.98
4974691--4974742	25	2.0	26	85	3	70	25	13	23	38	1.91
4976219--4976354	26	5.2	26	98	0	236	36	24	5	33	1.80
4978091--4978123	16	2.0	17	88	5	50	63	15	12	9	1.51
4978771--4978880	26	4.2	26	90	0	184	33	5	24	36	1.79
4980317--4980391	26	2.8	26	85	4	87	36	22	10	30	1.88
4980495--4980610	27	4.3	27	91	1	169	18	23	24	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325