genome.fa.s4.2.7.7.80.10.50.1000.215.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  215  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66547903--66548109	80	2.6	80	83	4	247	25	22	26	25	2.00
66550193--66550376	40	4.6	39	75	6	138	26	23	27	22	2.00
66550233--66550421	80	2.4	81	77	4	186	23	24	29	22	1.99
66552328--66552362	2	18.0	2	94	5	63	48	0	0	51	1.00
66558624--66558772	42	3.5	43	79	11	162	27	20	25	26	1.99
66564354--66564393	17	2.4	17	95	0	71	47	20	5	27	1.70
66568227--66568266	8	5.0	8	84	0	53	50	22	22	5	1.68
66572451--66572496	20	2.3	21	82	14	62	26	17	28	28	1.98
66572489--66572660	60	2.8	61	82	10	185	26	19	26	27	1.99
66572525--66572630	28	3.7	27	73	21	81	26	18	28	26	1.98
66573247--66573280	17	2.0	17	100	0	68	41	11	11	35	1.78
66575965--66576148	40	4.6	40	82	4	174	28	22	26	23	1.99
66584083--66584266	40	4.6	40	82	4	174	28	22	26	23	1.99
66590315--66590387	29	2.5	29	93	0	101	26	31	16	26	1.96
66592128--66592288	29	5.6	29	89	0	223	25	15	33	25	1.95
66600166--66600326	29	5.6	29	89	0	223	25	15	33	25	1.95
66609542--66609701	29	5.5	29	82	4	180	25	31	16	26	1.97
66612823--66612860	20	1.9	20	88	0	58	34	2	10	52	1.50
66614203--66614271	28	2.5	28	95	2	122	43	27	10	18	1.82
66620546--66620583	20	1.9	20	88	0	58	34	2	10	52	1.50
66622210--66622278	28	2.5	28	95	2	122	43	27	10	18	1.82
66626562--66626590	14	2.0	15	93	6	51	51	20	0	27	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66637889--66637966	29	2.7	29	83	0	102	26	17	33	21	1.96
66645025--66645102	29	2.7	29	83	0	102	26	17	33	21	1.96
66650258--66650451	56	3.4	57	82	2	214	30	23	14	31	1.94
66659279--66659304	12	2.2	12	100	0	52	34	15	26	23	1.94
66669071--66669242	93	1.8	93	90	2	274	28	28	20	22	1.99
66669063--66669228	46	3.6	47	75	16	175	30	28	19	21	1.98
66679591--66679633	10	4.2	10	82	5	50	0	13	6	79	0.93
66679591--66679633	21	2.1	20	83	12	52	0	13	6	79	0.93
66682274--66682311	20	1.9	20	84	10	51	26	31	10	31	1.90
66691548--66691643	49	2.0	49	95	0	174	40	13	15	30	1.86
66710051--66710087	18	2.1	18	89	0	56	10	0	16	72	1.10
66712119--66712269	43	3.5	44	83	4	191	27	14	25	31	1.95
66714994--66715023	11	2.9	10	90	9	51	10	6	13	70	1.34
66715212--66715567	183	2.0	181	91	1	577	19	14	10	55	1.68
66717533--66717576	18	2.4	18	100	0	88	34	11	22	31	1.90
66717533--66717576	9	4.9	9	77	0	52	34	11	22	31	1.90
66723377--66723590	27	8.0	28	85	7	275	40	17	15	26	1.90
66723375--66723592	81	2.7	80	85	3	305	39	18	15	26	1.90
66723377--66723617	54	4.5	52	78	10	225	37	17	16	27	1.92
66723582--66723900	27	11.9	27	85	3	412	16	19	22	40	1.91
66723582--66723900	53	6.0	53	84	4	417	16	19	22	40	1.91
66730238--66730433	40	4.9	40	88	3	272	27	28	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66731888--66732013	40	3.2	39	80	6	139	21	25	24	28	1.99
66731827--66732013	80	2.3	80	78	12	204	22	27	24	25	2.00
66740237--66740422	39	4.8	39	87	2	214	24	30	21	23	1.99
66740242--66740422	78	2.3	78	87	3	249	23	30	22	24	1.99
66748205--66748391	39	4.8	39	88	2	223	24	31	21	23	1.99
66748241--66748392	39	3.9	39	92	2	243	23	31	20	24	1.98
66748210--66748391	77	2.3	79	88	2	260	23	30	21	24	1.99
66756393--66756523	30	4.5	30	86	8	171	28	25	13	32	1.94
66756392--66756523	58	2.3	58	85	4	176	28	26	13	31	1.94
66758870--66758979	40	2.8	40	85	0	148	23	26	23	26	2.00
66761825--66761995	40	4.3	39	77	10	159	28	21	26	23	1.99
66772834--66772990	35	4.2	36	75	6	136	46	12	12	28	1.78
66774766--66774791	2	13.0	2	100	0	52	50	0	0	50	1.00
66774901--66775055	56	2.8	56	93	0	274	27	16	24	31	1.96
66776872--66777060	40	4.7	40	92	2	308	25	27	22	24	2.00
66780245--66780414	86	2.0	83	93	3	286	43	4	16	35	1.69
66781720--66781748	10	2.7	11	94	5	51	82	0	0	17	0.66
66783960--66783999	21	2.0	20	85	14	55	40	0	12	47	1.41
66784399--66784481	26	3.2	27	83	6	109	13	21	24	40	1.89
66789925--66790030	25	4.3	25	81	1	115	35	19	23	20	1.96
66790120--66790179	26	2.3	26	80	8	77	35	21	23	20	1.96
66790727--66790755	13	2.2	13	100	0	58	24	13	0	62	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66792593--66792640	25	1.9	25	86	0	69	33	25	16	25	1.96
66792688--66792743	11	5.5	11	71	16	57	35	12	19	32	1.89
66792677--66792743	20	3.3	20	93	0	116	34	11	20	32	1.90
66792794--66792911	23	5.1	23	87	4	175	28	18	21	31	1.97
66792793--66792911	46	2.6	46	91	4	195	29	18	21	31	1.97
66792793--66792932	23	6.0	25	81	13	129	28	18	22	30	1.97
66799190--66799373	40	4.6	40	92	2	271	28	28	19	23	1.98
66810168--66810201	12	2.8	12	86	0	50	5	41	0	52	1.25
66811360--66811438	20	4.0	20	98	0	149	35	12	20	31	1.90
66811364--66811439	11	7.5	11	69	16	65	35	13	19	31	1.90
66811490--66811584	23	4.1	23	87	5	138	28	18	21	31	1.97
66811799--66811862	31	2.1	31	90	0	101	37	14	23	25	1.92
66819048--66819138	25	3.7	24	72	4	67	36	16	23	24	1.94
66819099--66819147	24	2.1	23	84	3	62	38	18	22	20	1.93
66819237--66819311	26	2.9	26	82	4	89	34	18	24	22	1.96
66819588--66819629	22	2.0	21	85	4	57	50	19	0	30	1.48
66823422--66823589	46	3.6	45	75	10	160	22	21	27	28	1.99
66823418--66823590	93	1.9	93	90	0	274	21	21	28	27	1.99
66826476--66826510	15	2.3	15	90	0	52	11	20	11	57	1.64
66828926--66829101	46	3.8	45	81	10	212	21	21	29	28	1.98
66828922--66829093	93	1.8	93	94	0	308	20	21	30	27	1.98
66831917--66831962	22	2.0	22	83	8	56	32	26	28	13	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66834612--66834719	40	2.7	39	77	4	101	26	21	26	25	1.99
66836380--66836480	39	2.5	40	85	1	132	30	22	24	21	1.99
66836380--66836562	40	4.6	40	82	3	181	27	22	26	23	1.99
66844381--66844481	39	2.5	40	85	1	132	30	22	24	21	1.99
66844381--66844563	40	4.6	40	82	3	181	27	22	26	23	1.99
66859839--66859908	21	3.2	21	66	18	61	40	25	14	20	1.90
66859827--66859922	45	2.2	44	94	3	167	38	26	12	22	1.90
66859827--66859894	21	3.0	23	65	18	61	38	23	14	23	1.92
66859845--66859920	21	3.5	21	67	22	57	38	27	13	21	1.90
66869283--66869370	43	2.0	43	86	0	122	57	9	13	19	1.62
66878572--66878694	40	3.1	40	81	6	142	30	23	24	21	1.99
66878537--66878721	40	4.6	40	77	9	139	27	23	26	22	2.00
66878537--66878724	80	2.3	80	78	12	197	27	23	26	22	2.00
66886520--66886642	41	3.1	40	84	2	158	29	22	25	22	1.99
66886485--66886642	40	4.0	40	79	5	160	27	22	26	23	2.00
66887269--66887391	29	4.2	29	92	0	174	30	15	28	25	1.96
66895075--66895235	29	5.6	29	87	0	178	27	15	32	24	1.95
66897122--66897175	25	2.2	25	89	0	81	57	3	20	18	1.55
66902035--66902258	49	4.7	47	77	9	197	23	29	19	27	1.98
66907640--66907731	45	2.0	45	97	0	175	41	2	19	36	1.64
66907969--66908234	56	4.8	56	91	0	399	28	16	22	32	1.96
66907964--66908229	111	2.4	112	90	1	410	28	15	22	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
66909352--66909421	36	1.9	36	97	0	131	25	4	25	44	1.72
66911164--66911234	30	2.3	30	85	4	97	16	19	33	29	1.94
66929701--66929788	44	2.0	44	95	0	158	44	6	13	35	1.71
66931814--66931851	20	1.9	20	89	10	60	39	10	7	42	1.69
66932321--66932350	2	15.0	2	100	0	60	50	0	0	50	1.00
66933055--66933100	23	1.9	24	86	8	67	39	21	23	15	1.92
66933055--66933117	25	2.6	23	82	10	63	39	19	23	17	1.92
66936198--66936570	49	7.5	49	79	4	408	29	27	17	25	1.97
66936198--66936570	99	3.8	96	80	6	406	29	27	17	25	1.97
66936191--66936571	150	2.6	148	90	2	595	29	27	17	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325