Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  16  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3598634--3598677
23
2.0
23
90
4
72
31
0
0
68
0.90
3610293--3610353
32
1.9
32
83
6
79
42
8
8
40
1.64
3610430--3610465
18
2.0
18
88
0
54
30
5
11
52
1.59
3614979--3615013
15
2.2
16
90
5
54
22
5
11
60
1.52
3615781--3615834
18
3.1
18
78
5
65
48
0
3
48
1.19
3621457--3621494
20
1.9
20
94
0
67
55
0
0
44
0.99
3623071--3623133
31
2.0
31
87
0
90
46
9
11
33
1.72
3625308--3625545
49
4.8
49
82
3
305
28
26
18
25
1.98
3625316--3625548
100
2.3
100
87
2
326
28
27
18
26
1.98
3627378--3627443
31
2.1
31
85
0
87
40
4
12
42
1.62
3641453--3641488
18
2.0
18
100
0
72
33
11
16
38
1.84
3647084--3647187
51
2.0
51
92
0
172
35
46
3
14
1.63
3650410--3650447
19
2.0
19
85
10
51
44
0
0
55
0.99
3650430--3650470
16
2.7
16
85
7
50
56
0
0
43
0.99
3654827--3654856
14
2.1
14
100
0
60
86
6
0
6
0.70
3659673--3659715
16
2.6
17
82
14
54
41
2
0
55
1.12
3661626--3661677
26
2.0
26
85
7
70
26
3
3
65
1.27
3667668--3667707
18
2.1
18
86
9
53
77
20
0
2
0.88
3671408--3671438
16
1.9
16
93
0
53
48
0
9
41
1.36
3672559--3672629
35
2.0
35
100
0
142
33
16
35
14
1.89
3680811--3680843
15
2.3
15
89
5
50
57
0
9
33
1.30
3682978--3683051
9
8.1
9
72
13
62
25
4
2
67
1.21
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3682971--3683046
28
2.8
28
82
4
93
28
3
3
63
1.30
3683023--3683073
21
2.3
23
80
10
61
23
0
1
74
0.92
3693967--3694141
46
3.8
46
76
13
187
29
29
20
21
1.98
3694699--3694735
20
1.9
18
89
10
56
35
21
0
43
1.53
3699300--3699357
21
2.8
21
86
2
73
36
10
1
51
1.46
3699421--3699462
21
2.0
21
85
0
57
38
9
7
45
1.64
3702379--3702528
43
3.5
43
85
0
210
22
22
30
24
1.99
3704026--3704091
30
2.2
30
94
0
114
27
3
13
56
1.52
3704189--3704222
12
2.8
12
90
0
50
67
0
0
32
0.91
3711781--3711826
17
2.6
17
89
3
74
56
0
0
43
0.99
3712372--3712397
2
13.0
2
100
0
52
50
0
0
50
1.00
3713271--3713300
13
2.3
13
100
0
60
36
23
6
33
1.81
3719937--3719996
26
2.4
24
83
8
75
68
3
0
28
1.05
3719967--3720025
21
2.8
22
85
7
70
69
6
0
23
1.12
3720071--3720103
15
2.1
16
88
11
50
69
0
0
30
0.88
3722530--3722723
39
4.9
39
89
0
271
23
32
21
22
1.98
3728483--3728515
12
2.8
12
90
4
50
45
0
0
54
0.99
3731953--3731991
19
2.0
20
85
5
53
71
2
5
20
1.17
3734487--3734591
30
3.4
31
83
8
126
73
16
3
6
1.19
3734487--3734577
33
3.1
29
83
14
123
75
15
4
4
1.11
3734533--3734557
10
2.5
10
100
0
50
92
0
8
0
0.40
3734588--3734612
8
3.1
8
100
0
50
24
52
12
12
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3744049--3744206
70
2.2
71
87
6
232
22
14
22
41
1.90
3744145--3744768
139
4.5
140
95
2
1114
25
17
19
37
1.93
3744604--3744628
13
1.9
13
100
0
50
24
12
0
64
1.27
3744796--3744891
49
2.0
49
97
0
183
30
16
20
32
1.95
3744846--3745037
70
2.7
71
88
5
282
30
17
18
32
1.95
3745048--3745192
74
1.9
75
87
2
211
31
18
22
28
1.97
3745124--3745294
92
1.8
93
85
3
238
28
19
19
33
1.96
3745195--3745572
77
4.7
77
76
13
325
29
17
18
34
1.94
3745032--3745574
243
2.2
239
84
5
689
29
17
18
34
1.94
3746382--3746465
29
2.9
29
92
5
136
78
15
2
3
0.99
3750503--3750869
185
2.0
187
87
5
539
31
14
9
44
1.77
3751687--3751716
11
2.6
12
89
10
53
70
0
0
30
0.88
3753380--3753430
4
12.8
4
100
0
102
25
0
23
50
1.49
3754397--3754440
16
2.8
17
86
10
58
25
11
15
47
1.79
3759676--3759717
19
2.2
18
84
16
50
61
11
0
26
1.30
3762890--3762942
25
2.1
25
100
0
106
32
16
18
32
1.94
3765307--3765348
18
2.2
20
83
12
52
50
2
4
42
1.36
3775728--3775772
16
2.8
16
75
0
54
40
0
0
60
0.97
3775964--3776007
14
3.0
15
76
6
54
59
2
0
38
1.10
3780615--3780662
4
12.0
4
100
0
96
25
0
25
50
1.50
3790349--3790389
16
2.6
16
80
0
55
75
4
0
19
0.98
3794957--3795039
41
2.0
41
88
4
123
50
15
2
31
1.57
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3803837--3803867
16
1.9
16
93
0
53
45
12
6
35
1.68
3810176--3810226
21
2.5
20
80
6
57
25
1
1
70
1.08
3812847--3812890
24
1.9
22
81
9
52
43
13
0
43
1.44
3815079--3815113
3
11.7
3
93
0
61
37
0
0
62
0.95
3815187--3815485
162
1.8
162
89
2
476
31
11
20
37
1.87
3819008--3819046
16
2.4
17
83
8
55
35
2
0
61
1.10
3821600--3821646
20
2.4
19
86
10
67
8
10
2
78
1.04
3821678--3821727
24
2.2
23
82
13
59
44
0
4
52
1.20
3821737--3821776
21
1.9
21
85
10
55
40
0
2
57
1.12
3822057--3822097
21
2.0
21
85
9
57
19
0
4
75
0.98
3822341--3822411
13
4.8
15
69
26
53
56
0
0
43
0.99
3822328--3822381
12
4.0
13
78
21
58
50
1
0
48
1.11
3822448--3822501
24
2.3
24
84
9
67
59
1
0
38
1.08
3822354--3822568
114
1.9
113
86
6
310
57
3
1
36
1.27
3822589--3822645
20
2.9
19
82
12
71
56
0
1
42
1.10
3822591--3822637
21
2.3
21
89
10
71
59
0
0
40
0.97
3822602--3822659
14
3.9
14
72
24
55
58
0
1
39
1.08
3822606--3822705
32
3.0
33
88
7
139
58
1
2
39
1.16
3822671--3822730
22
2.5
24
81
7
79
55
5
0
40
1.22
3822591--3822646
21
2.8
20
81
7
69
58
0
1
39
1.08
3822758--3822806
21
2.4
20
83
12
64
77
0
4
18
0.92
3823090--3823118
14
2.0
15
93
6
51
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3823131--3823224
39
2.3
40
80
15
104
55
1
2
41
1.19
3823176--3823230
22
2.5
22
88
8
78
58
0
0
41
0.98
3823176--3823230
21
2.5
22
88
8
78
58
0
0
41
0.98
3823285--3823344
13
4.7
13
73
8
52
78
1
8
11
1.03
3832935--3832961
12
2.2
12
100
0
54
66
0
7
25
1.17
3834648--3834692
20
2.3
19
84
3
63
64
2
2
31
1.18
3834648--3834716
3
24.0
3
72
8
54
60
1
5
31
1.29
3835043--3835262
3
72.3
3
69
16
89
59
2
7
30
1.38
3842626--3842669
22
1.9
23
86
9
63
38
6
13
40
1.71
3845335--3845376
6
6.8
6
79
15
50
64
19
11
4
1.44
3848095--3848130
17
2.1
17
100
0
72
44
11
22
22
1.84
3849321--3849450
65
2.0
65
100
0
260
26
13
18
41
1.88
3851399--3851431
2
16.5
2
100
0
66
48
0
0
51
1.00
3852969--3853025
30
1.9
29
82
10
71
36
1
0
61
1.07
3857416--3857471
29
1.9
29
85
0
76
37
17
8
35
1.82
3857644--3857676
17
1.9
17
100
0
66
24
24
9
42
1.83
3859764--3859839
37
2.1
37
97
2
145
13
27
0
59
1.35
3860644--3860676
13
2.5
13
86
13
50
57
0
3
39
1.14
3864642--3864679
16
2.2
18
81
13
53
13
5
2
78
1.02
3864643--3864679
17
2.2
17
90
4
58
13
5
2
78
1.03
3865514--3865558
22
2.0
22
83
8
56
22
0
8
68
1.16
3870063--3870139
20
3.7
21
75
15
79
40
22
10
27
1.86
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3870063--3870143
22
3.9
21
81
12
96
39
22
9
28
1.86
3871850--3871875
12
2.2
12
100
0
52
30
7
0
61
1.24
3873404--3873466
33
1.9
33
90
0
99
20
7
38
33
1.82
3875633--3875984
27
13.0
27
96
0
623
22
21
21
34
1.96
3881893--3881918
2
13.0
2
100
0
52
50
0
0
50
1.00
3882007--3882634
308
2.0
312
87
4
901
35
10
14
39
1.81
3883528--3883563
17
2.1
17
89
0
54
47
8
16
27
1.75
3887234--3887291
11
5.5
11
84
8
59
32
0
1
65
1.03
3887320--3887360
20
2.0
20
90
0
64
41
21
2
34
1.67
3887719--3887776
14
4.1
14
77
20
50
24
0
25
50
1.50

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325