genome.fa.s4.2.7.7.80.10.50.1000.155.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  155  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47395560--47395743	79	2.3	77	79	10	192	27	20	26	26	1.99
47396330--47396363	16	2.1	16	88	0	50	23	8	29	38	1.85
47400732--47400916	79	2.3	81	83	7	227	23	27	24	24	2.00
47400725--47400916	40	4.8	39	76	8	163	23	28	23	24	2.00
47406776--47406969	40	4.8	40	81	8	207	25	21	26	26	1.99
47406778--47406995	79	2.7	78	76	12	219	25	21	26	26	1.99
47419329--47419370	21	2.0	21	95	0	75	14	35	33	16	1.89
47419332--47419378	21	2.2	21	88	0	67	17	38	27	17	1.91
47420045--47420239	29	6.7	29	79	5	189	36	23	15	24	1.93
47420049--47420239	87	2.2	87	80	7	217	36	23	15	24	1.93
47422231--47422255	6	4.2	6	100	0	50	84	0	0	16	0.63
47422292--47422344	26	2.2	23	86	10	70	73	5	3	16	1.17
47422292--47422374	26	3.3	25	77	12	66	77	3	7	12	1.10
47422312--47422366	23	2.4	23	81	6	58	81	1	7	9	0.93
47422485--47422548	19	3.5	19	85	4	60	75	4	3	17	1.11
47422501--47422571	19	3.7	19	87	7	81	73	2	1	22	1.05
47422518--47422572	4	14.2	4	75	21	55	74	1	0	23	0.91
47422501--47422571	31	2.3	31	80	9	83	73	2	1	22	1.05
47429033--47429080	24	2.1	22	81	14	53	18	0	33	47	1.49
47432660--47432887	46	5.0	46	98	0	429	33	7	27	31	1.84
47432891--47433001	47	2.4	47	89	0	168	36	9	27	27	1.87
47435560--47435823	40	6.6	40	95	0	429	25	21	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47436487--47436587	40	2.5	40	82	6	107	26	22	25	24	2.00
47436525--47436621	40	2.5	40	78	8	99	27	24	24	22	2.00
47439289--47439516	46	5.0	46	98	0	429	33	7	27	31	1.84
47439520--47439630	47	2.4	47	89	0	168	36	9	27	27	1.87
47444259--47444435	47	3.8	46	80	13	202	29	29	19	21	1.97
47444267--47444438	94	1.8	93	91	3	283	29	29	19	21	1.98
47461965--47462071	39	2.7	38	83	2	124	27	21	28	23	1.99
47461971--47462100	40	3.3	40	84	3	165	24	23	28	23	2.00
47465714--47465938	40	5.7	40	89	2	294	23	22	27	27	1.99
47468888--47469017	40	3.2	40	76	4	129	25	23	26	23	2.00
47475034--47475058	13	1.9	13	100	0	50	16	36	40	8	1.77
47488691--47488736	23	2.0	23	95	0	83	39	8	19	32	1.82
47489946--47490178	29	8.0	29	79	6	202	35	21	15	28	1.94
47489946--47490178	87	2.7	88	78	6	224	35	21	15	28	1.94
47496436--47496491	23	2.5	24	80	13	57	51	1	3	42	1.29
47497786--47497813	2	14.0	2	100	0	56	50	0	0	50	1.00
47501547--47501610	28	2.3	28	89	5	94	29	12	25	32	1.92
47508822--47508847	2	13.0	2	100	0	52	50	0	0	50	1.00
47509397--47509464	28	2.4	28	88	9	95	27	13	26	32	1.93
47510405--47510488	28	3.2	28	65	25	83	23	16	29	29	1.96
47510357--47510545	50	3.8	49	84	2	225	27	18	26	27	1.98
47513503--47513559	15	3.8	15	81	4	62	8	17	19	54	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47515699--47515887	50	3.8	49	82	2	216	26	18	25	28	1.98
47520858--47520897	20	2.0	20	85	9	55	55	0	0	45	0.99
47525572--47525627	27	2.1	27	100	0	112	50	23	3	23	1.65
47530140--47530349	40	5.2	40	87	2	287	22	28	23	25	1.99
47533703--47533801	28	3.5	28	81	9	112	29	25	16	29	1.96
47541368--47541466	28	3.5	28	81	9	112	29	25	16	29	1.96
47543965--47544113	80	1.9	80	81	2	183	22	30	24	22	1.99
47544006--47544113	40	2.7	38	85	8	128	21	29	25	23	1.99
47551976--47552124	80	1.9	80	81	2	183	22	30	24	22	1.99
47552017--47552124	40	2.7	38	85	8	128	21	29	25	23	1.99
47556231--47556308	30	2.6	29	77	16	79	11	17	14	56	1.67
47556240--47556319	15	5.4	15	77	7	83	10	18	13	57	1.64
47559252--47559434	40	4.6	39	81	6	192	24	22	28	24	1.99
47559252--47559429	78	2.2	80	83	8	222	24	23	29	23	1.99
47562075--47562246	46	3.7	46	75	11	172	19	20	31	27	1.97
47568962--47568998	2	18.5	2	100	0	74	51	0	0	48	1.00
47576036--47576131	46	2.1	46	98	0	183	23	22	25	28	2.00
47580149--47580249	27	3.7	27	84	5	123	38	8	23	28	1.85
47580446--47580486	18	2.3	18	100	0	82	14	41	29	14	1.86
47581599--47581678	29	2.7	29	86	5	108	27	32	15	25	1.95
47589490--47589569	29	2.7	29	86	5	108	27	32	15	25	1.95
47601262--47601331	27	2.6	27	95	2	122	30	27	14	28	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47608752--47608821	27	2.6	27	95	2	122	30	27	14	28	1.95
47622476--47622647	93	1.8	93	96	0	317	27	29	21	20	1.98
47622469--47622644	46	3.8	46	79	12	216	28	29	21	20	1.98
47630733--47630896	71	2.3	71	100	0	328	18	28	17	35	1.94
47630733--47630930	71	2.8	70	92	3	276	20	28	17	33	1.95
47653622--47653668	23	2.0	23	100	0	94	25	8	29	36	1.86
47658594--47658664	29	2.4	29	95	0	124	25	15	30	28	1.96
47658650--47658788	24	5.8	24	97	0	233	20	17	26	35	1.95
47658653--47658810	48	3.3	48	82	8	187	22	18	25	33	1.96
47658649--47658810	72	2.2	72	86	2	218	22	17	25	33	1.96
47661219--47661447	48	4.8	48	89	1	334	26	19	26	27	1.99
47661227--47661494	48	5.6	47	85	4	213	28	17	26	27	1.98
47661228--47661494	96	2.8	96	83	3	279	28	17	26	27	1.98
47661219--47661494	144	1.9	144	82	4	351	28	18	26	27	1.98
47669007--47669317	48	6.5	48	80	5	310	26	16	28	28	1.97
47669007--47669317	142	2.2	144	86	4	416	26	16	28	28	1.97
47676206--47676287	27	3.1	27	79	8	87	36	19	23	20	1.95
47676406--47676770	27	13.5	27	87	0	433	24	18	18	37	1.94
47676406--47676770	81	4.5	81	90	0	487	24	18	18	37	1.94
47676734--47677020	27	10.7	27	79	7	226	31	9	21	38	1.85
47676761--47677020	81	3.2	80	79	6	274	31	8	21	38	1.84
47686165--47686312	43	3.4	43	92	1	226	23	19	25	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47686166--47686348	86	2.1	86	81	4	217	26	19	24	30	1.98
47689061--47689311	27	9.3	27	84	6	303	28	23	8	39	1.84
47689072--47689400	27	12.2	27	80	1	93	31	23	8	36	1.85
47689061--47689310	54	4.6	54	91	0	392	28	23	8	40	1.84
47689061--47689311	81	3.1	81	85	4	362	28	23	8	39	1.84
47689304--47689457	27	5.7	27	82	0	200	39	21	7	31	1.82
47689297--47689457	81	2.0	81	86	0	223	39	21	8	31	1.82
47689304--47689454	54	2.8	54	91	0	239	40	21	7	30	1.81
47691397--47691541	43	3.4	43	83	3	177	31	22	16	28	1.96
47692735--47692786	26	2.0	26	81	7	61	38	3	13	44	1.62
47704234--47704399	35	4.7	35	77	0	170	42	18	9	30	1.81
47710189--47710314	43	3.0	43	83	4	166	31	25	13	29	1.94
47712202--47712263	31	2.0	31	96	0	115	53	22	4	19	1.64
47725853--47726023	93	1.8	93	93	0	297	28	29	21	21	1.98
47725845--47726020	46	3.8	46	80	10	205	28	29	20	21	1.98
47728401--47728480	15	5.4	15	75	7	74	58	12	16	12	1.63
47728412--47728489	15	5.2	15	72	9	52	56	14	15	14	1.68
47731417--47731587	93	1.8	93	88	2	263	29	28	19	22	1.98
47731409--47731584	46	3.8	46	76	11	171	30	28	19	22	1.98
47731460--47731603	46	3.1	45	73	21	120	29	29	19	22	1.98
47735735--47735804	27	2.6	27	95	2	122	30	27	14	28	1.95
47738766--47738821	28	2.0	28	85	0	76	26	21	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47738773--47738840	28	2.4	28	78	9	68	23	20	29	26	1.99
47743851--47743947	24	4.0	24	98	0	185	38	27	16	17	1.91
47748467--47748571	40	2.6	40	81	0	102	21	17	29	31	1.96
47748561--47748670	28	3.9	28	90	0	157	24	11	30	32	1.91
47755082--47755329	53	4.7	53	79	9	233	22	25	17	34	1.96
47768025--47768124	43	2.3	43	79	3	112	31	18	23	28	1.97
47779075--47779180	42	2.5	42	86	4	144	29	14	24	32	1.94
47786090--47786137	24	2.0	24	91	0	78	31	14	14	39	1.86
47787089--47787125	18	2.1	19	90	10	60	29	8	27	35	1.85
47788675--47788743	30	2.3	30	92	0	120	23	27	30	18	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325