genome.fa.s4.2.7.7.80.10.50.1000.199.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  199  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61595959--61596060	43	2.4	43	85	6	118	33	27	13	25	1.94
61601407--61601616	39	5.4	39	87	0	294	21	30	22	25	1.99
61606546--61606771	40	5.7	40	87	4	264	25	26	20	27	1.99
61606580--61606771	80	2.4	80	86	8	291	25	26	19	29	1.99
61611504--61611675	93	1.8	93	92	0	290	29	27	20	23	1.99
61611499--61611671	46	3.7	46	77	13	192	30	26	20	23	1.98
61614987--61615201	49	4.4	49	96	0	403	29	9	31	29	1.88
61615303--61615387	37	2.3	37	95	0	152	24	20	34	21	1.97
61617463--61617891	29	14.8	29	95	0	743	28	15	30	25	1.96
61618375--61618473	41	2.4	41	80	11	114	25	25	24	25	2.00
61618418--61618496	40	2.0	40	80	9	90	26	26	26	20	1.99
61621462--61621676	49	4.4	49	96	0	403	29	9	31	29	1.88
61621778--61621862	37	2.3	37	95	0	152	24	20	34	21	1.97
61628499--61628669	40	4.3	39	77	10	159	28	21	26	23	1.99
61636983--61637299	48	6.8	46	88	5	447	29	31	6	32	1.83
61636983--61637300	94	3.4	93	87	6	453	29	31	6	32	1.83
61645617--61645653	18	2.1	18	94	0	65	18	16	13	51	1.76
61650834--61651037	40	5.1	40	84	2	248	25	21	26	26	1.99
61657733--61657766	15	2.3	15	94	0	59	11	32	14	41	1.82
61660853--61660910	28	2.1	28	93	0	98	27	8	12	51	1.68
61667112--61668115	48	21.6	48	91	3	1498	34	6	27	31	1.82
61668269--61668370	37	2.8	37	92	0	159	27	17	30	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61673694--61673879	40	4.7	40	86	5	191	25	25	20	27	1.99
61673700--61673879	80	2.2	80	81	11	217	24	26	21	27	1.99
61675750--61675927	40	4.4	40	92	4	281	29	20	25	24	1.99
61675742--61675961	40	5.6	39	86	7	238	29	20	25	25	1.99
61682444--61682471	2	14.0	2	100	0	56	50	0	0	50	1.00
61688118--61688284	40	4.2	40	78	9	153	23	26	23	26	2.00
61695147--61695298	40	3.8	39	84	1	151	23	26	23	26	2.00
61695147--61695298	80	1.9	80	83	5	200	23	26	23	26	2.00
61698747--61698878	29	4.6	29	84	0	156	25	15	33	25	1.95
61701616--61701747	29	4.6	29	84	0	156	25	15	33	25	1.95
61704512--61704695	40	4.6	39	75	6	138	26	23	27	22	2.00
61704552--61704740	80	2.4	81	77	4	186	23	24	29	22	1.99
61712629--61712812	40	4.6	39	75	6	138	26	23	27	22	2.00
61712669--61712857	80	2.4	81	77	4	186	23	24	29	22	1.99
61720893--61720966	29	2.6	29	95	0	139	27	14	31	27	1.95
61720950--61721025	29	2.6	29	78	0	89	22	19	35	22	1.96
61720893--61721025	58	2.3	58	80	2	133	24	17	33	24	1.96
61726272--61726402	29	4.5	29	83	0	145	24	31	16	27	1.97
61727573--61727651	9	8.1	10	70	17	51	5	18	1	74	1.07
61728741--61728787	20	2.3	20	88	0	67	27	27	8	36	1.86
61730788--61730847	30	2.0	30	90	6	95	58	13	1	26	1.45
61736441--61736493	24	2.2	24	96	0	97	32	33	7	26	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61736905--61736945	21	1.9	22	85	5	57	41	31	4	21	1.74
61759908--61759938	16	1.9	16	93	0	53	51	22	12	12	1.74
61760152--61760231	29	2.8	28	83	3	106	23	16	33	26	1.95
61763604--61763815	46	4.6	46	89	2	302	41	11	24	21	1.86
61763604--61763815	91	2.3	92	87	2	293	41	11	24	21	1.86
61763604--61763848	91	2.7	91	83	3	242	42	12	23	22	1.87
61764446--61764481	5	6.8	5	87	12	54	80	0	0	19	0.71
61767679--61767812	29	4.6	28	73	7	99	25	16	33	24	1.96
61775421--61775485	29	2.2	29	80	0	76	33	18	27	20	1.96
61778413--61778443	16	1.9	16	93	0	53	51	19	16	12	1.76
61784995--61785095	28	3.5	28	86	6	114	29	13	26	29	1.94
61791115--61791176	33	1.9	32	96	3	115	33	20	27	17	1.96
61794321--61794526	80	2.6	80	80	5	220	25	22	26	25	2.00
61794320--61794526	40	5.2	40	79	4	179	26	22	26	25	2.00
61798351--61798465	55	2.1	56	81	14	132	35	20	25	18	1.95
61798376--61798445	27	2.5	28	88	4	97	35	21	25	17	1.95
61798376--61798465	28	3.2	26	82	7	99	33	22	25	18	1.97
61803477--61803527	25	2.0	25	85	7	68	45	1	5	47	1.38
61803607--61803640	17	1.9	18	88	5	52	50	5	5	38	1.51
61819102--61819294	39	4.9	39	90	0	251	23	31	21	23	1.98
61819132--61819294	39	4.2	39	93	0	263	24	31	20	23	1.98
61827307--61827481	40	4.4	40	82	4	174	26	21	26	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61827316--61827481	80	2.1	80	86	2	226	25	22	27	24	2.00
61828794--61828969	46	3.8	46	78	4	192	21	21	28	28	1.98
61828791--61828962	93	1.8	93	92	0	290	22	21	29	27	1.99
61836443--61836635	39	4.9	39	90	0	251	23	31	21	23	1.98
61836473--61836635	39	4.2	39	93	0	263	24	31	20	23	1.98
61851309--61851442	46	2.9	48	80	12	179	20	20	29	28	1.98
61856763--61856832	27	2.5	28	88	2	106	28	14	25	31	1.95
61856763--61856844	27	3.0	27	80	8	103	29	13	23	34	1.93
61864675--61864744	27	2.5	28	88	2	106	28	14	25	31	1.95
61864675--61864756	27	3.0	27	80	8	103	29	13	23	34	1.93
61872887--61873563	38	18.5	37	78	9	567	25	21	14	38	1.92
61872887--61873564	150	4.6	149	77	10	559	26	21	14	38	1.92
61873507--61873596	38	2.3	38	84	1	108	24	25	16	33	1.96
61874244--61874378	43	3.1	44	83	6	184	24	17	29	28	1.97
61874261--61874378	45	2.7	43	84	6	166	26	17	28	27	1.98
61874684--61874845	38	4.3	38	92	0	243	20	20	26	32	1.97
61874838--61875010	45	3.9	45	84	6	201	24	23	27	24	2.00
61878590--61878640	3	17.0	3	100	0	102	33	0	0	66	0.92
61878956--61879041	42	2.0	43	95	2	156	20	10	25	43	1.84
61878975--61879039	20	3.2	20	70	8	67	20	9	29	41	1.83
61882321--61882359	19	2.1	18	85	9	51	41	0	25	33	1.56
61882824--61883142	48	6.6	48	80	8	355	26	18	30	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61882811--61883142	144	2.3	142	85	3	441	26	18	30	25	1.98
61889222--61889561	27	12.6	27	86	2	432	28	23	9	39	1.85
61889222--61889605	81	4.7	80	81	5	227	28	23	9	38	1.86
61890980--61891170	24	8.0	24	90	4	280	28	22	21	27	1.99
61890980--61891149	47	3.6	47	94	1	295	29	22	20	27	1.98
61890980--61891170	71	2.7	71	89	5	278	28	22	21	27	1.99
61891364--61891427	31	2.1	31	90	0	101	35	15	23	25	1.94
61892981--61893024	20	2.3	20	88	7	65	9	36	31	22	1.86
61894593--61894624	16	2.0	16	93	0	55	34	18	0	46	1.49
61894822--61895262	50	8.7	50	80	4	440	31	25	16	26	1.96
61894831--61895262	101	4.3	99	80	2	418	31	25	15	26	1.96
61894978--61895059	26	3.2	26	63	30	68	30	29	14	25	1.95
61894825--61895262	151	2.9	151	88	1	635	31	25	16	26	1.96
61898348--61898663	48	6.6	48	81	2	341	26	20	29	23	1.99
61898348--61898663	96	3.3	96	83	1	384	26	20	29	23	1.99
61908626--61908673	25	1.9	25	82	0	60	39	14	8	37	1.76
61917092--61917117	13	2.0	13	100	0	52	53	15	0	30	1.42
61918850--61918882	7	4.7	7	100	0	66	42	30	0	27	1.56
61919056--61919093	20	1.9	20	88	0	58	36	31	13	18	1.89
61927824--61927892	36	1.9	36	93	0	120	42	18	4	34	1.71
61927924--61927963	19	2.2	18	90	4	62	42	17	2	37	1.63
61935377--61935549	46	3.8	46	94	0	292	23	32	9	34	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
61935573--61935907	47	7.1	47	95	0	589	25	27	12	34	1.92
61935811--61935886	22	3.3	22	67	16	64	25	27	13	34	1.93
61941516--61941667	40	3.8	39	84	1	151	23	26	23	26	2.00
61941516--61941667	80	1.9	80	83	5	200	23	26	23	26	2.00
61941720--61941746	12	2.2	12	100	0	54	40	18	7	33	1.78
61949338--61949508	93	1.8	93	96	0	315	27	29	22	20	1.98
61949330--61949510	46	3.9	46	81	9	233	27	29	21	20	1.98
61951873--61951961	30	3.0	30	79	11	94	56	15	17	10	1.67
61951873--61951955	15	5.6	14	73	10	58	55	16	18	9	1.68
61951884--61951961	15	5.2	15	75	9	70	55	15	17	11	1.69

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325