genome.fa.s4.2.7.7.80.10.50.1000.309.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  309  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94037634--94037675	11	3.9	11	81	6	50	28	0	9	61	1.27
94037959--94038006	8	6.0	8	80	9	53	20	2	0	77	0.88
94037944--94037983	14	3.1	14	75	17	50	25	7	0	67	1.16
94037944--94037993	25	2.0	25	92	3	84	22	6	0	72	1.07
94037959--94038006	13	3.6	13	77	5	60	20	2	0	77	0.88
94040614--94040651	19	2.0	20	89	5	60	15	0	18	65	1.27
94044546--94044597	20	2.5	20	82	14	70	26	13	9	50	1.72
94044326--94044967	247	2.6	247	95	0	1140	32	15	15	37	1.89
94044793--94044844	20	2.5	20	82	14	70	28	15	7	48	1.73
94049467--94049509	21	2.0	21	100	0	86	41	9	13	34	1.77
94049959--94050019	28	2.1	29	81	3	70	31	6	1	60	1.32
94054229--94054278	25	2.0	25	100	0	100	48	0	16	36	1.46
94054466--94054506	15	2.7	15	88	0	55	63	7	2	26	1.33
94054501--94054555	28	2.0	28	96	3	103	47	7	10	34	1.66
94057898--94058003	45	2.4	45	82	4	128	20	25	16	36	1.94
94068194--94068296	43	2.3	42	85	9	134	29	21	21	28	1.98
94068213--94068296	43	2.0	43	95	0	150	32	22	20	25	1.98
94068224--94068315	43	2.1	43	87	0	130	29	27	20	22	1.99
94071508--94071609	29	3.5	29	95	0	177	28	14	29	27	1.95
94071593--94071669	29	2.7	29	77	0	82	22	18	35	24	1.96
94071504--94071669	58	2.9	59	82	4	178	26	15	31	25	1.96
94075450--94075493	16	2.8	16	80	16	56	25	0	2	72	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94076107--94076286	7	24.7	7	68	12	69	40	37	1	20	1.63
94076108--94076158	15	3.6	14	82	12	52	45	33	0	21	1.52
94076247--94076281	15	2.4	15	90	4	54	45	34	0	20	1.51
94076319--94076518	41	4.9	41	88	1	267	21	24	23	31	1.99
94076318--94076520	82	2.5	81	89	0	298	21	24	22	31	1.99
94085848--94085916	31	2.3	31	85	7	88	44	21	8	24	1.80
94089897--94089956	30	2.0	30	93	0	102	46	16	16	20	1.84
94094658--94094733	30	2.5	30	91	4	118	42	15	19	22	1.89
94097412--94097452	21	2.0	21	90	0	64	19	29	21	29	1.98
94102191--94102248	20	2.6	22	76	13	57	43	1	1	53	1.21
94104073--94104124	24	2.2	23	82	3	59	51	3	0	44	1.19
94105233--94105268	18	1.9	19	88	5	56	16	16	0	66	1.25
94106621--94106685	33	2.0	33	96	0	121	20	12	20	47	1.81
94108327--94108387	31	2.0	31	87	3	88	55	6	8	29	1.54
94111958--94112000	18	2.6	16	85	10	59	51	2	0	46	1.13
94114050--94114075	13	2.0	13	100	0	52	46	23	7	23	1.78
94132844--94132924	19	4.2	19	96	3	144	37	9	17	35	1.83
94138570--94138635	1	66.0	1	72	0	51	86	0	12	1	0.64
94138570--94138635	13	4.9	13	77	14	71	86	0	12	1	0.64
94140554--94140654	29	3.5	29	81	9	116	28	26	13	30	1.94
94140553--94140654	28	3.5	29	81	6	109	28	27	13	30	1.94
94142036--94142137	44	2.3	44	93	1	170	29	22	21	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94142317--94142498	87	2.1	89	85	10	250	32	17	21	27	1.96
94142200--94142914	220	3.2	220	92	2	1143	32	18	22	27	1.97
94142537--94142720	87	2.1	89	82	9	218	33	17	20	28	1.96
94142505--94143135	310	2.0	310	94	0	1091	32	17	21	28	1.96
94142725--94143004	90	3.1	89	88	7	385	30	17	22	28	1.97
94142815--94143234	220	1.9	220	92	0	696	31	17	21	29	1.96
94143627--94143724	19	5.2	19	90	7	155	37	11	16	34	1.84
94143617--94143723	36	2.9	35	76	20	101	38	11	15	34	1.84
94144232--94144282	26	2.0	26	85	7	70	27	3	7	60	1.42
94145669--94145755	11	7.8	11	78	10	97	66	3	0	29	1.08
94145672--94145755	3	30.0	3	75	17	74	66	3	0	29	1.08
94145669--94145742	8	8.9	8	70	24	55	67	2	0	29	1.04
94145686--94145755	14	5.5	13	73	23	53	65	2	0	31	1.07
94145669--94145742	25	3.1	25	84	5	100	67	2	0	29	1.04
94148718--94148773	28	2.0	28	100	0	112	39	10	21	28	1.87
94148939--94148964	13	2.0	13	100	0	52	38	7	23	30	1.83
94149008--94149062	26	2.1	26	93	0	92	32	7	16	43	1.75
94151699--94151736	19	2.0	19	89	0	58	42	26	5	26	1.76
94153459--94153528	4	17.2	4	75	21	58	72	2	21	2	1.10
94153453--94153533	33	2.4	34	80	10	87	72	2	20	3	1.11
94154198--94154245	24	2.0	24	84	15	64	31	0	16	52	1.45
94154247--94154271	2	12.5	2	100	0	50	48	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94159362--94159411	24	2.1	24	100	0	100	38	26	4	32	1.75
94159928--94159953	13	2.0	13	100	0	52	38	7	23	30	1.83
94162382--94162435	27	2.0	27	100	0	108	44	18	18	18	1.87
94167970--94168010	21	2.0	21	85	0	55	26	24	26	21	2.00
94170324--94170388	21	3.2	21	74	12	82	40	21	26	12	1.88
94170318--94170406	39	2.3	39	100	0	178	38	23	24	13	1.91
94175089--94175248	52	3.1	52	80	8	180	31	26	16	25	1.96
94180392--94180433	2	21.5	2	85	4	59	50	2	2	45	1.27
94180943--94180968	12	2.2	12	100	0	52	15	7	30	46	1.74
94183503--94183535	11	3.1	11	86	8	50	63	0	27	9	1.24
94185234--94185461	46	5.0	46	88	1	314	41	14	24	19	1.89
94185244--94185456	92	2.3	92	93	0	354	42	15	23	18	1.88
94187533--94187633	29	3.5	29	95	1	177	27	29	14	27	1.96
94187505--94187633	58	2.2	57	86	4	170	27	32	14	25	1.95
94195330--94195405	29	2.6	29	78	0	80	25	35	18	21	1.95
94195389--94195490	29	3.5	29	95	0	177	27	29	14	28	1.95
94195329--94195490	58	2.8	58	83	5	175	25	32	16	25	1.96
94201210--94201255	23	2.0	23	84	12	60	45	10	6	36	1.65
94202194--94202320	42	3.0	42	82	6	152	29	25	13	30	1.94
94202420--94202537	31	3.8	31	93	0	200	27	28	19	24	1.99
94202513--94202689	50	3.5	50	93	0	300	25	22	16	35	1.95
94221260--94221295	2	18.0	2	88	0	54	52	0	2	44	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94225475--94225530	26	2.2	25	80	3	67	53	1	1	42	1.21
94229461--94229498	6	6.3	6	96	0	67	34	0	0	65	0.93
94230348--94230402	19	2.9	20	75	20	55	58	1	1	38	1.20
94240142--94240201	30	2.0	30	100	0	120	36	23	13	26	1.92
94240610--94240639	14	2.1	14	93	0	51	56	6	16	20	1.62
94241521--94241563	19	2.3	19	80	8	52	51	4	13	30	1.62
94243343--94243508	35	4.6	35	80	8	190	34	24	10	30	1.89
94243342--94243508	75	2.3	71	82	7	194	34	23	10	30	1.89
94245073--94245116	20	2.2	20	84	4	54	61	0	0	38	0.96
94245627--94245659	3	11.0	3	100	0	66	0	33	0	66	0.92
94247759--94247904	43	3.4	42	76	9	134	28	17	26	28	1.97
94252514--94252685	93	1.8	93	94	0	308	27	29	21	21	1.99
94252507--94252682	46	3.8	46	78	12	207	28	28	21	21	1.98
94258550--94258781	49	4.7	49	81	5	277	29	27	18	25	1.98
94258550--94258781	100	2.3	98	83	4	286	29	27	18	25	1.98
94262930--94262976	14	3.1	15	77	20	53	59	2	2	36	1.21
94262911--94262967	27	2.2	26	83	3	69	56	1	8	33	1.41
94263150--94263207	3	20.0	3	89	7	93	65	1	0	32	1.03
94263131--94263212	17	4.9	17	80	15	91	63	3	1	31	1.19
94263150--94263204	14	3.9	14	92	2	83	65	1	0	32	1.03
94265696--94265735	19	2.1	18	86	9	53	77	2	20	0	0.88
94266802--94266941	27	5.2	28	90	5	184	35	22	24	17	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
94268545--94268654	26	4.2	26	97	0	184	36	24	5	33	1.79
94273404--94273454	26	2.0	26	88	7	77	45	0	5	49	1.26
94273406--94273461	26	2.2	26	83	6	69	48	0	5	46	1.25
94273758--94273816	21	2.8	21	80	14	77	61	3	5	30	1.34
94275826--94275852	8	3.4	8	100	0	54	55	0	0	44	0.99
94276336--94276842	132	3.8	132	80	4	407	34	16	19	28	1.94
94276341--94276843	131	3.8	131	80	3	512	33	17	19	29	1.95
94282193--94282334	73	2.0	73	88	4	216	30	15	4	48	1.66
94285136--94285214	25	3.3	25	66	16	67	31	30	5	32	1.79
94285086--94285722	49	13.7	47	80	14	621	29	29	8	32	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325