genome.fa.s4.2.7.7.80.10.50.1000.136.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  136  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41261866--41261931	34	1.9	34	100	0	132	34	7	18	39	1.79
41269219--41269317	42	2.3	42	82	5	119	32	19	17	31	1.94
41269209--41269371	43	3.8	44	74	11	131	31	22	17	28	1.96
41271077--41271227	40	3.8	39	84	2	151	23	27	23	26	2.00
41271077--41271227	80	1.9	79	83	6	198	23	27	23	26	2.00
41272516--41272551	19	1.9	19	88	5	56	13	19	0	66	1.24
41278953--41279081	40	3.2	40	75	15	133	24	26	24	24	2.00
41278969--41279119	40	3.8	40	77	6	128	22	26	24	26	2.00
41278969--41279119	79	1.9	80	82	6	191	22	26	24	26	2.00
41284293--41284368	24	3.0	24	83	9	82	34	13	21	31	1.91
41286577--41286709	43	3.1	43	85	0	176	33	24	12	30	1.92
41292391--41292428	14	2.8	13	78	21	51	31	2	13	52	1.54
41296550--41296771	43	5.2	43	89	0	327	12	22	32	31	1.92
41296957--41297053	28	3.4	28	74	7	81	22	17	31	27	1.97
41298547--41298586	13	3.0	13	80	20	55	32	2	12	52	1.52
41310592--41310666	37	2.0	37	100	0	150	21	32	8	38	1.82
41314295--41314466	93	1.8	93	96	0	317	29	29	20	20	1.98
41314288--41314463	46	3.8	46	79	12	216	30	29	19	20	1.97
41324658--41324835	40	4.5	40	86	3	218	24	21	27	25	2.00
41329813--41329972	29	5.5	29	82	4	180	25	31	16	26	1.97
41337862--41338021	29	5.5	29	82	4	180	25	31	16	26	1.97
41340749--41340793	23	2.0	23	95	0	81	33	13	22	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41346029--41346146	43	2.7	43	85	2	148	31	27	16	24	1.97
41350414--41350462	17	2.8	18	74	22	50	24	18	22	34	1.96
41351284--41351450	40	4.2	40	79	6	169	25	21	27	25	1.99
41358423--41358471	17	2.8	18	74	22	50	24	18	22	34	1.96
41359293--41359459	40	4.2	40	79	6	169	25	21	27	25	1.99
41361093--41361188	24	3.9	24	84	2	111	34	15	20	29	1.94
41361116--41361221	48	2.3	46	83	6	135	37	17	19	24	1.94
41361115--41361221	24	4.7	22	78	11	117	37	17	19	25	1.94
41361115--41361230	22	5.1	21	77	13	90	37	18	19	25	1.94
41364945--41365015	30	2.4	30	95	0	124	26	30	22	19	1.98
41369646--41369813	40	4.2	40	80	12	184	23	22	28	26	1.99
41369646--41369813	80	2.1	79	87	4	239	23	22	28	26	1.99
41377614--41377781	40	4.2	40	80	12	184	23	22	28	26	1.99
41377614--41377781	80	2.1	79	87	4	239	23	22	28	26	1.99
41383251--41383417	40	4.2	40	82	2	185	24	26	22	26	2.00
41391246--41391413	40	4.2	40	82	1	185	24	26	22	26	2.00
41406953--41407109	43	3.7	43	73	7	122	35	22	16	25	1.95
41409462--41409495	17	1.9	18	88	5	52	26	0	23	50	1.50
41409462--41409495	9	3.9	9	84	7	52	26	0	23	50	1.50
41410387--41410461	24	3.2	24	84	3	82	20	20	22	37	1.94
41412115--41412188	27	2.7	27	89	2	103	39	21	18	20	1.93
41412141--41412207	24	2.6	25	88	11	93	38	22	19	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41415810--41415894	27	3.1	28	81	13	104	45	15	12	25	1.82
41420954--41420991	8	4.6	8	90	6	58	63	2	0	34	1.09
41423380--41423508	46	2.8	46	93	0	222	30	31	20	17	1.96
41430865--41430992	65	2.0	65	96	0	238	25	14	17	42	1.87
41434957--41435080	65	1.9	65	96	0	230	23	16	16	42	1.88
41440280--41440317	19	2.0	20	85	15	53	39	23	0	36	1.55
41440542--41440714	46	3.7	46	79	10	190	30	26	20	23	1.99
41445425--41445546	42	2.9	42	86	2	163	30	13	24	31	1.94
41445435--41445546	43	2.6	42	85	2	152	30	15	24	30	1.95
41447648--41447831	100	1.8	100	91	0	305	27	16	25	30	1.97
41447649--41447836	49	3.8	49	78	2	214	28	16	25	30	1.97
41449753--41449826	29	2.6	29	88	0	112	21	35	25	17	1.95
41454459--41454676	40	5.5	40	89	2	316	25	27	22	23	2.00
41462558--41462775	40	5.5	40	87	4	291	25	26	23	24	2.00
41464803--41464970	40	4.2	40	85	5	207	26	28	22	23	1.99
41464803--41464970	80	2.1	80	87	4	241	26	28	22	23	1.99
41472767--41472934	40	4.2	40	85	5	207	26	28	22	23	1.99
41472767--41472934	80	2.1	80	87	4	241	26	28	22	23	1.99
41483723--41483797	29	2.6	29	89	4	107	26	16	32	25	1.96
41488366--41488463	41	2.3	40	86	6	124	30	30	12	26	1.92
41488366--41488503	40	3.3	40	80	10	129	32	28	10	28	1.91
41489529--41489567	19	2.1	19	85	0	51	71	7	5	15	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41490029--41490147	28	4.2	28	96	1	211	31	22	26	19	1.98
41490251--41490317	28	2.4	28	94	0	116	31	8	26	32	1.87
41501849--41501939	42	2.1	43	84	8	114	35	21	18	24	1.96
41501818--41501975	43	3.7	43	75	10	119	31	24	18	25	1.97
41506250--41506469	40	5.5	40	85	3	255	24	26	24	25	2.00
41514140--41514358	40	5.4	40	84	2	215	23	26	24	25	2.00
41517686--41517738	28	1.9	28	81	11	65	20	15	30	33	1.93
41518894--41518957	26	2.4	27	84	10	87	39	25	12	23	1.90
41519060--41519113	28	1.9	28	92	0	90	22	22	22	33	1.97
41519061--41519155	27	3.5	27	73	20	81	18	23	24	33	1.97
41519061--41519173	54	2.1	54	82	9	133	20	23	22	34	1.97
41526267--41526353	41	2.1	41	93	2	149	25	13	41	19	1.88
41526858--41526919	26	2.3	27	75	10	65	38	24	11	25	1.88
41527028--41527104	28	2.8	28	81	13	97	20	25	20	32	1.97
41527024--41527136	27	4.2	28	81	10	112	19	23	22	34	1.96
41529367--41529546	35	5.1	35	77	0	171	41	18	11	28	1.85
41535119--41535217	28	3.5	29	84	4	105	30	26	15	28	1.96
41541178--41541345	40	4.2	40	82	4	178	25	23	27	23	2.00
41541178--41541345	80	2.1	80	81	4	196	25	23	27	23	2.00
41548406--41548534	40	3.2	40	83	5	165	22	24	29	24	1.99
41556786--41556884	28	3.5	29	83	6	114	30	27	15	27	1.96
41567140--41567277	44	3.2	43	79	9	140	32	22	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41567139--41567310	86	2.0	85	79	11	183	34	22	16	26	1.95
41570728--41570895	40	4.2	39	74	10	137	23	25	23	27	2.00
41570744--41570893	80	1.9	80	83	8	198	22	26	24	27	1.99
41581946--41582153	40	5.2	40	83	2	231	25	20	26	27	1.99
41587241--41587303	27	2.3	28	76	15	69	44	4	6	44	1.50
41588385--41588418	17	2.0	17	88	11	52	14	2	17	64	1.40
41589239--41589271	17	1.9	17	93	0	57	84	0	15	0	0.61
41596581--41596619	19	2.0	20	95	5	71	25	10	30	33	1.89
41596884--41596964	27	3.0	27	90	1	117	18	23	20	37	1.94
41603197--41603229	13	2.6	13	90	4	50	39	0	12	48	1.40
41614208--41614415	40	5.2	40	87	1	276	24	21	27	26	1.99
41619864--41620031	40	4.2	40	79	3	178	24	22	27	26	2.00
41622911--41623176	24	11.1	24	96	0	471	20	17	25	36	1.94
41626807--41626880	29	2.6	29	95	0	139	27	31	14	27	1.95
41626748--41626880	58	2.3	58	80	2	133	24	33	17	24	1.96
41634685--41634758	29	2.6	29	95	0	139	27	31	14	27	1.95
41634626--41634758	58	2.3	58	80	2	133	24	33	17	24	1.96
41637457--41637533	39	1.9	41	84	10	106	59	3	11	24	1.49
41643214--41643263	18	2.9	16	77	13	55	36	10	18	36	1.84
41643980--41644047	33	2.1	33	97	2	129	27	11	16	44	1.82
41654533--41654631	28	3.5	29	83	6	114	30	27	15	27	1.96
41658296--41658463	40	4.2	40	82	3	180	27	27	20	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41660847--41660884	17	2.2	18	90	9	62	26	13	13	47	1.79
41660881--41660934	27	2.0	27	88	0	81	37	16	9	37	1.81
41664455--41664718	87	3.0	87	81	7	309	48	10	14	26	1.76
41664952--41664997	2	23.5	2	86	4	67	45	0	0	54	0.99
41665447--41665518	31	2.4	31	83	6	94	68	0	0	31	0.90
41665901--41665937	11	3.1	13	81	18	53	32	0	0	67	0.91
41665905--41665942	11	3.2	12	81	11	51	34	0	0	65	0.93
41666060--41666122	30	2.1	30	96	0	117	57	15	3	23	1.53
41666152--41666194	22	2.0	22	85	0	59	58	11	11	18	1.63
41666159--41666199	11	3.7	11	80	0	55	56	9	14	19	1.66

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325