genome.fa.s4.2.7.7.80.10.50.1000.157.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  157  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48072929--48073061	58	2.3	58	80	2	133	24	17	33	24	1.96
48080802--48080875	29	2.6	29	95	0	139	27	14	31	27	1.95
48080859--48080934	29	2.6	29	78	0	89	22	19	35	22	1.96
48080802--48080934	58	2.3	58	80	2	133	24	17	33	24	1.96
48085032--48085088	9	5.9	9	73	15	51	35	8	21	35	1.84
48085030--48085092	20	3.2	20	95	0	117	36	12	19	31	1.89
48085145--48085216	24	3.0	24	91	6	110	30	20	22	26	1.98
48085409--48085472	31	2.1	31	90	0	101	35	15	23	25	1.94
48088047--48088115	24	2.9	24	76	8	77	20	20	18	40	1.92
48088145--48088223	25	3.2	26	84	10	103	30	24	18	26	1.98
48088255--48088307	27	2.0	27	92	0	88	30	22	15	32	1.94
48097664--48097811	43	3.5	43	80	9	169	27	19	24	28	1.99
48104578--48104785	40	5.2	40	84	4	242	25	22	27	25	2.00
48105002--48105048	24	2.0	24	95	0	85	36	2	23	38	1.67
48107458--48107532	25	3.0	25	74	18	66	30	17	25	26	1.97
48108568--48108671	27	3.9	27	81	5	102	38	21	21	19	1.94
48108975--48109053	27	3.0	26	79	5	86	35	21	21	21	1.96
48109281--48109387	27	4.0	27	91	0	160	24	21	19	34	1.96
48113263--48113426	71	2.3	71	100	0	328	18	28	17	35	1.94
48113263--48113460	71	2.8	70	91	3	258	20	28	17	33	1.95
48120837--48121000	71	2.3	71	100	0	328	18	28	17	35	1.94
48120837--48121034	71	2.8	70	91	3	258	20	28	17	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48123363--48123426	29	2.2	29	83	2	85	31	18	28	21	1.97
48130782--48130964	24	7.6	24	93	0	276	33	25	19	21	1.97
48130760--48130964	48	4.3	48	81	9	229	33	24	19	22	1.97
48137778--48137857	29	2.8	28	77	7	81	31	30	15	23	1.95
48143533--48143573	22	1.9	21	85	5	55	63	2	2	31	1.20
48144516--48144595	29	2.8	28	75	7	81	31	31	13	23	1.93
48144823--48144865	8	5.4	8	82	0	50	13	20	20	44	1.86
48151228--48151448	40	5.6	40	85	4	288	24	22	26	26	2.00
48151676--48151717	22	1.9	22	85	9	59	35	7	14	42	1.73
48153076--48153113	20	2.0	20	89	5	60	76	2	10	10	1.12
48155683--48155854	46	3.8	46	79	10	183	20	20	30	29	1.97
48155679--48155847	91	1.9	91	92	2	286	20	20	30	28	1.98
48163241--48163412	93	1.8	93	92	0	290	20	21	29	28	1.98
48163245--48163419	46	3.8	46	76	13	178	20	21	29	29	1.98
48165116--48165174	23	2.7	23	77	12	63	33	0	23	42	1.55
48169588--48169758	47	3.6	47	84	2	180	23	30	18	28	1.97
48169779--48169946	46	3.6	45	73	10	142	23	25	20	30	1.98
48169779--48169949	94	1.8	92	87	5	254	23	25	20	30	1.98
48173405--48173572	40	4.2	40	79	3	187	25	21	27	26	1.99
48178575--48178661	43	2.0	43	100	0	174	40	6	27	25	1.81
48184722--48184836	29	4.0	29	84	6	137	28	28	14	27	1.95
48184722--48184823	29	3.6	29	86	6	145	28	30	15	25	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48186453--48186616	40	4.1	40	83	1	195	25	28	21	24	1.99
48190244--48190358	29	4.0	29	83	6	137	28	29	14	26	1.95
48190235--48190345	58	1.9	58	92	1	188	27	31	15	25	1.95
48190238--48190345	29	3.8	29	84	6	139	27	30	15	25	1.96
48191188--48191286	40	2.5	40	88	3	146	23	29	24	23	1.99
48197232--48197369	29	4.8	29	88	4	199	28	30	14	26	1.95
48202339--48202371	17	1.9	17	93	0	57	60	0	12	27	1.32
48208392--48208522	47	2.8	48	74	14	139	23	19	26	30	1.98
48211466--48211534	15	4.6	15	83	0	84	11	17	13	57	1.64
48211457--48211544	30	3.0	30	81	8	99	10	17	15	56	1.66
48213152--48213281	40	3.2	40	80	6	131	25	26	22	25	2.00
48217079--48217254	46	3.8	46	78	12	207	21	20	28	29	1.98
48229192--48229223	16	2.0	16	93	0	55	43	15	0	40	1.47
48232018--48232210	40	4.8	40	85	0	224	26	22	25	24	2.00
48242270--48242370	28	3.5	28	86	6	114	29	26	13	29	1.94
48242358--48242488	29	4.5	29	85	1	165	25	32	16	26	1.96
48248686--48248718	16	2.0	17	88	5	50	39	0	24	36	1.56
48248849--48248920	29	2.5	28	86	6	92	31	16	25	26	1.96
48252213--48252256	21	2.1	21	100	0	88	18	18	36	27	1.94
48257705--48257853	80	1.9	80	81	2	183	22	30	24	22	1.99
48257746--48257853	40	2.7	38	85	8	128	21	29	25	23	1.99
48266556--48266739	39	4.7	40	88	2	205	23	31	21	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48266586--48266747	39	4.2	39	91	2	254	24	32	20	23	1.98
48266594--48266749	77	2.0	78	92	1	260	22	31	20	25	1.98
48274664--48274852	38	4.8	40	88	1	199	23	31	21	23	1.98
48274708--48274862	38	4.0	38	91	5	249	21	31	20	26	1.98
48280074--48280158	34	2.5	35	84	5	111	27	22	21	29	1.99
48280361--48280431	21	3.2	21	63	18	54	29	22	23	23	1.99
48280594--48280667	27	2.7	27	87	0	112	37	18	18	24	1.94
48280659--48280806	27	5.5	27	82	3	163	20	18	22	38	1.93
48303964--48304093	40	3.3	39	76	8	136	23	27	23	24	2.00
48310723--48310769	24	2.0	24	91	0	76	36	2	36	25	1.68
48312172--48312282	27	4.1	28	80	11	117	16	22	22	38	1.92
48312172--48312282	53	2.1	53	83	8	136	16	22	22	38	1.92
48313554--48313660	29	3.7	29	80	6	112	27	30	14	28	1.95
48315012--48315091	27	3.0	27	78	10	83	16	26	22	35	1.95
48315012--48315106	28	3.5	26	76	12	75	16	25	22	35	1.95
48320512--48320641	40	3.2	40	80	10	151	23	27	25	23	2.00
48329265--48329507	24	10.1	24	96	0	414	36	25	18	20	1.95
48331768--48331897	40	3.3	39	83	4	163	23	28	25	23	1.99
48333713--48334292	48	12.0	48	91	0	899	34	6	27	31	1.82
48334337--48334444	37	2.9	37	95	0	189	22	19	32	25	1.97
48339522--48339585	31	2.1	31	90	0	101	25	23	14	37	1.92
48339779--48339895	23	5.0	24	87	7	152	29	22	20	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48339945--48340011	20	3.3	20	89	0	98	32	20	11	34	1.90
48347814--48347877	31	2.1	31	90	0	101	25	23	15	35	1.94
48348067--48348183	23	5.0	24	89	7	170	29	22	20	28	1.98
48348230--48348270	18	2.3	18	95	0	73	34	19	9	36	1.85
48359418--48359541	57	2.2	58	80	4	144	30	20	17	31	1.96
48363545--48364069	260	2.0	261	98	0	1016	34	16	22	26	1.95
48367648--48367695	20	2.4	20	100	0	96	35	4	10	50	1.56
48371223--48371270	25	1.9	25	86	0	69	33	25	16	25	1.96
48371313--48371373	20	3.0	20	92	0	104	34	11	21	32	1.89
48371423--48371563	24	6.0	24	87	7	182	29	21	22	26	1.99
48371423--48371563	45	3.0	46	84	9	160	29	21	22	26	1.99
48371755--48371818	31	2.1	31	90	0	101	35	15	23	25	1.94
48372813--48373119	40	7.6	40	87	4	409	24	22	26	26	2.00
48372818--48373119	83	3.7	83	91	2	470	23	22	27	26	2.00
48372813--48373094	123	2.3	124	89	4	421	23	21	27	26	1.99
48380602--48380867	40	6.6	40	87	3	320	24	22	26	26	2.00
48382719--48382745	9	3.0	9	100	0	54	22	33	33	11	1.89
48386500--48386563	23	2.8	23	82	0	83	20	21	18	39	1.93
48389804--48389875	33	2.1	34	84	2	92	25	23	25	26	2.00
48393126--48393292	40	4.2	40	79	6	169	26	22	26	24	2.00
48401084--48401250	40	4.2	40	79	6	169	26	22	26	24	2.00
48406549--48406617	28	2.5	28	95	2	122	18	10	27	43	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
48408242--48408279	20	1.9	20	88	0	58	52	10	2	34	1.50
48414546--48414614	28	2.5	28	95	2	122	18	10	27	43	1.82
48416241--48416278	20	1.9	20	88	0	58	52	10	2	34	1.50
48420983--48421011	10	2.9	10	100	0	58	41	10	17	31	1.83
48422223--48422346	39	3.2	39	89	1	176	23	19	33	24	1.97
48422223--48422377	39	3.9	39	86	0	175	23	21	32	23	1.98
48427460--48427574	43	2.7	43	81	5	142	29	26	17	26	1.97
48431038--48431132	40	2.4	40	77	5	111	26	15	25	32	1.96
48436184--48436340	43	3.6	44	75	5	151	32	21	18	28	1.96
48436190--48436346	86	1.8	85	82	4	199	33	20	18	28	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325