genome.fa.s4.2.7.7.80.10.50.1000.288.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  288  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88705943--88706036	37	2.5	37	84	0	116	50	13	19	17	1.79
88705955--88706054	31	3.2	31	68	16	89	48	15	19	18	1.82
88706889--88706995	27	4.0	27	80	0	115	26	20	17	35	1.95
88706878--88706992	54	2.1	54	82	3	133	28	19	20	32	1.96
88706987--88707057	27	2.7	26	71	4	70	32	2	23	40	1.69
88716939--88716995	20	2.8	20	86	2	78	33	0	5	61	1.18
88724882--88724985	52	2.0	52	100	0	208	34	23	25	17	1.96
88726534--88726566	2	17.0	2	90	6	50	45	3	0	51	1.16
88760153--88760194	16	2.6	17	85	11	61	47	4	21	26	1.70
88760153--88760203	16	3.2	16	80	5	59	45	5	21	27	1.75
88761180--88761234	10	5.4	10	77	18	51	50	0	0	49	1.00
88761185--88761254	24	2.8	25	71	28	60	50	1	0	48	1.09
88766073--88766150	19	4.4	19	72	18	62	41	12	6	39	1.69
88766058--88766175	51	2.3	51	91	2	184	41	14	4	39	1.65
88771274--88771351	19	4.4	19	73	18	62	42	11	6	39	1.67
88771251--88771382	51	2.6	51	83	0	183	43	12	6	38	1.67
88773684--88773742	27	2.2	26	82	14	68	57	1	3	37	1.25
88774480--88774600	28	4.3	28	76	6	111	29	4	4	61	1.36
88774464--88774579	58	2.0	58	89	5	180	29	5	2	62	1.30
88774465--88774610	58	2.5	58	82	10	165	30	4	3	60	1.34
88774616--88774666	16	3.2	16	78	8	52	29	1	0	68	1.00
88774616--88774660	16	2.8	16	83	10	65	31	0	0	68	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88775091--88775139	21	2.3	22	75	3	55	22	2	0	75	0.90
88781982--88782019	18	2.0	20	85	10	53	31	21	26	21	1.98
88786944--88787002	29	2.0	29	100	0	118	27	6	13	52	1.65
88791181--88791381	100	2.0	100	98	0	384	52	15	13	18	1.75
88794224--88794303	29	2.8	28	79	3	106	31	12	17	38	1.87
88794857--88795017	62	2.6	62	85	4	209	46	13	12	27	1.78
88800524--88800585	18	3.0	20	84	11	65	72	1	1	24	1.02
88800536--88800582	17	2.9	16	81	9	51	72	2	2	23	1.06
88800524--88800585	23	2.7	23	81	16	67	72	1	1	24	1.02
88803407--88803492	25	3.5	25	90	7	124	31	20	24	23	1.98
88805672--88805795	41	2.8	45	83	14	168	20	21	27	29	1.98
88810545--88810664	51	2.4	51	85	0	159	39	11	21	27	1.88
88816561--88816648	44	2.0	45	84	10	119	37	19	20	22	1.94
88816859--88816944	34	2.5	34	84	3	100	44	13	9	32	1.76
88817905--88817939	17	2.2	16	90	10	54	74	0	14	11	1.08
88824054--88824080	14	1.9	14	100	0	54	22	7	0	70	1.12
88824110--88824175	7	8.1	8	75	18	57	22	3	0	74	0.96
88824116--88824204	8	10.5	8	70	13	54	20	3	1	75	1.01
88824124--88824203	14	5.4	14	74	11	70	20	3	1	75	1.03
88825153--88825199	21	2.1	22	84	7	60	48	0	4	46	1.21
88825428--88825467	20	2.0	21	90	9	66	75	0	25	0	0.81
88827075--88827120	23	2.0	23	83	8	58	13	26	23	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88827184--88827228	23	2.0	23	90	0	72	15	31	22	31	1.95
88827635--88827816	46	4.0	46	90	1	249	40	14	23	21	1.90
88828895--88828967	36	2.0	36	100	0	146	19	16	13	50	1.77
88830168--88830225	30	1.9	30	92	0	98	20	39	24	15	1.91
88832799--88832837	20	1.9	21	89	5	62	43	10	5	41	1.61
88844622--88844712	45	2.0	46	89	2	139	28	25	16	29	1.97
88845543--88845947	46	8.8	46	89	2	566	20	23	14	41	1.88
88849623--88849708	26	3.3	26	74	6	75	29	33	15	22	1.94
88849636--88849714	26	3.0	26	74	7	79	34	35	11	18	1.87
88850735--88850772	19	2.0	19	85	10	51	44	2	13	39	1.57
88852695--88852749	28	2.0	28	92	7	94	67	5	3	23	1.28
88853607--88853659	28	1.9	28	85	11	74	24	9	3	62	1.42
88855108--88855208	42	2.4	42	81	6	105	31	15	21	30	1.95
88862668--88862780	42	2.7	42	77	9	113	28	22	24	24	1.99
88867873--88867976	3	34.0	3	69	18	63	32	2	2	61	1.25
88868175--88868236	23	2.6	24	76	19	67	32	6	4	56	1.46
88868230--88868267	19	2.0	19	94	0	67	31	13	5	50	1.63
88868652--88868707	27	2.1	28	83	6	71	28	7	3	60	1.40
88874908--88875048	27	5.2	27	80	10	146	36	21	22	19	1.95
88874890--88875052	54	3.0	54	89	4	224	36	20	23	19	1.95
88876642--88876749	26	4.2	26	93	0	189	36	24	7	32	1.83
88885447--88885622	27	6.4	27	88	0	226	15	25	24	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88885447--88885640	54	3.6	54	90	4	284	15	24	23	36	1.94
88885447--88885662	109	2.0	108	83	6	276	16	24	22	36	1.94
88885447--88885662	82	2.7	81	86	6	258	16	24	22	36	1.94
88892510--88892651	27	5.3	27	88	5	189	15	23	23	36	1.94
88892512--88892651	54	2.6	55	93	2	230	15	24	23	36	1.94
88893876--88893957	26	3.2	26	96	0	146	31	7	24	36	1.83
88895544--88895685	52	2.7	54	91	6	236	17	24	23	34	1.96
88895547--88895703	27	5.9	27	80	14	175	19	24	21	34	1.96
88901375--88901533	27	5.9	27	82	10	175	19	23	21	35	1.96
88901373--88901533	54	3.0	55	90	4	240	19	24	21	35	1.96
88901375--88901533	81	2.0	80	84	8	207	19	23	21	35	1.96
88906760--88906843	43	1.9	44	92	2	143	46	14	23	15	1.82
88906760--88906854	43	2.1	43	88	5	118	48	14	22	14	1.80
88907776--88907810	14	2.5	14	95	0	61	20	11	5	62	1.48
88907790--88908104	73	4.2	75	88	3	451	28	16	20	35	1.94
88908087--88908122	18	2.0	18	94	0	63	19	8	0	72	1.10
88908185--88908220	14	2.7	13	83	8	54	30	13	8	47	1.73
88908129--88908339	88	2.4	87	83	6	239	29	15	20	34	1.93
88909947--88909981	18	1.9	18	88	0	52	25	2	5	65	1.28
88910081--88910119	18	2.2	18	85	0	51	35	10	2	51	1.50
88910235--88910296	23	2.6	24	76	19	67	32	6	4	56	1.46
88910290--88910327	19	2.0	19	94	0	67	31	13	5	50	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88914796--88914830	2	17.5	2	87	0	52	45	2	0	51	1.16
88914796--88914833	12	3.2	12	88	0	58	44	2	0	52	1.14
88914791--88914830	14	2.9	14	88	0	53	42	5	0	52	1.23
88926058--88926257	42	4.8	42	82	13	252	29	26	14	30	1.95
88931937--88932125	50	3.8	50	81	1	209	29	25	19	26	1.98
88932379--88932432	27	2.0	27	85	0	72	38	14	7	38	1.75
88937088--88937124	5	7.6	5	82	17	51	16	0	0	83	0.64
88941487--88941517	15	2.1	15	100	0	62	25	19	16	38	1.92
88959290--88959342	9	5.8	9	86	2	70	58	20	0	20	1.39
88959393--88959479	34	2.6	34	77	3	86	40	13	8	37	1.75
88960789--88960820	13	2.5	13	94	0	55	43	6	6	43	1.54
88961610--88961648	6	6.3	6	85	5	51	23	0	0	76	0.78
88961781--88961824	22	2.0	22	86	0	61	52	0	0	47	1.00
88961844--88961885	13	2.9	14	80	13	50	54	0	0	45	0.99
88961848--88961884	16	2.3	16	86	13	58	59	0	0	40	0.97
88961905--88961970	34	2.0	32	88	5	96	53	3	0	43	1.16
88961917--88961970	17	3.3	15	76	16	54	55	1	0	42	1.10
88978294--88978423	44	2.9	45	82	7	158	30	20	22	26	1.98
88980340--88980412	2	36.5	2	83	0	83	43	2	1	52	1.24
88984398--88984431	2	17.0	2	100	0	68	50	0	0	50	1.00
88986145--88986224	39	2.1	39	100	0	160	26	23	17	32	1.97
88987257--88987303	16	2.9	16	75	12	51	21	12	0	65	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
88987290--88987315	13	2.0	13	100	0	52	7	7	0	84	0.77
88987537--88987582	19	2.3	20	88	7	67	34	4	19	41	1.71
88987997--88988316	168	1.9	167	81	5	387	36	14	9	39	1.79
88988370--88988410	18	2.4	18	80	8	50	19	4	2	73	1.13
88988513--88988547	18	1.9	18	88	0	52	25	0	8	65	1.21
88988589--88988615	14	1.9	14	100	0	54	29	7	3	59	1.42
88989152--88989194	8	5.4	8	97	0	77	67	0	9	23	1.19
88989152--88989205	16	3.4	16	89	0	63	61	0	14	24	1.34
88989151--88989206	24	2.3	24	81	0	76	60	0	16	23	1.35
88989165--88989220	16	3.5	16	82	4	60	57	0	21	21	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325