genome.fa.s4.2.7.7.80.10.50.1000.145.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  145  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44297904--44297963	25	2.3	26	80	5	68	36	25	8	30	1.85
44298065--44298151	27	3.3	26	87	4	120	18	22	21	36	1.95
44313040--44313149	40	2.7	41	80	8	136	21	27	25	25	2.00
44316087--44316296	40	5.2	40	87	2	305	25	24	28	21	1.99
44322991--44323168	40	4.5	40	84	4	200	22	29	24	24	1.99
44331198--44331303	40	2.7	38	85	10	133	20	30	25	23	1.99
44333440--44333649	40	5.2	40	88	2	305	21	28	24	25	1.99
44337483--44337633	40	3.8	40	79	6	155	26	23	27	22	2.00
44345298--44345515	122	1.8	120	83	6	287	32	11	23	33	1.90
44345474--44345624	40	3.8	40	78	6	155	27	23	27	21	1.99
44345511--44345640	40	3.2	40	79	2	154	23	23	28	23	2.00
44345474--44345640	80	2.1	79	82	7	205	26	23	27	22	2.00
44353082--44353152	16	4.4	16	76	0	70	50	23	18	7	1.71
44353367--44353467	29	3.5	29	82	2	114	27	12	25	33	1.93
44357969--44358059	29	3.2	29	82	1	112	29	13	28	28	1.94
44363346--44363514	40	4.2	40	80	4	173	23	26	21	28	1.99
44365696--44365867	93	1.8	93	93	0	299	28	29	20	20	1.98
44365689--44365864	46	3.8	46	76	12	189	29	29	20	20	1.98
44366285--44366344	30	2.0	30	86	0	84	30	25	6	38	1.81
44367234--44367319	23	3.7	22	77	10	84	22	23	17	37	1.94
44370699--44370874	46	3.8	46	81	10	232	20	21	29	28	1.98
44370695--44370866	93	1.8	93	96	0	317	20	22	30	27	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44373825--44373893	15	4.6	15	83	0	84	11	17	13	57	1.64
44373816--44373903	30	3.0	30	81	8	99	10	17	15	56	1.66
44376287--44376462	46	3.8	46	81	10	232	20	21	29	28	1.98
44376283--44376454	93	1.8	93	96	0	317	20	22	30	27	1.98
44385433--44385467	17	2.0	17	88	5	52	14	25	40	20	1.90
44385686--44385757	27	2.7	27	88	0	108	36	19	18	26	1.94
44385893--44385996	54	1.9	53	82	5	129	22	22	20	35	1.96
44385895--44385996	27	3.8	27	80	3	109	20	22	20	36	1.95
44390021--44390121	28	3.5	28	86	6	114	29	26	13	29	1.94
44391932--44392027	34	2.6	36	80	11	106	29	25	19	26	1.99
44391959--44392027	34	2.0	34	94	0	120	30	23	20	26	1.98
44399045--44399098	27	2.0	27	85	7	74	29	20	18	31	1.96
44401357--44401394	18	2.2	17	86	9	51	26	13	7	52	1.67
44402307--44402404	34	2.7	36	79	10	101	26	24	22	26	2.00
44402336--44402402	34	2.0	34	90	0	107	28	20	22	28	1.99
44409108--44409135	13	2.2	13	100	0	56	28	0	7	64	1.20
44411542--44411629	45	2.0	45	88	0	131	26	13	22	37	1.91
44413394--44413505	42	2.7	42	90	2	163	30	13	25	30	1.94
44416501--44416574	37	2.0	37	91	0	121	20	27	17	35	1.95
44418651--44418814	57	2.9	57	88	2	249	29	18	20	31	1.96
44426029--44426067	21	1.9	21	94	5	71	20	30	38	10	1.86
44427182--44427444	47	5.6	47	78	7	234	21	28	20	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44427182--44427444	140	1.9	141	84	4	352	21	28	20	29	1.98
44429969--44430053	30	2.8	30	77	10	91	31	24	3	40	1.72
44432602--44432632	15	2.1	15	100	0	62	48	12	0	38	1.42
44439197--44439288	46	2.0	46	97	0	175	31	19	16	32	1.94
44445364--44445429	31	2.1	31	100	0	132	46	0	28	24	1.52
44450632--44450802	40	4.3	39	77	10	159	28	21	26	23	1.99
44458402--44458572	40	4.3	39	77	10	159	28	21	26	23	1.99
44463823--44463949	62	2.0	62	90	0	200	48	11	14	25	1.77
44467169--44467211	22	2.0	22	85	0	59	41	0	4	53	1.21
44467345--44467389	22	2.0	22	83	8	56	40	4	0	55	1.20
44470956--44471013	30	1.9	30	89	6	91	39	5	24	31	1.77
44472624--44472792	93	1.8	91	94	2	302	28	28	20	21	1.98
44472621--44472800	46	4.0	43	75	17	152	29	28	20	22	1.98
44473212--44473271	30	2.0	30	90	0	93	30	25	8	36	1.85
44484040--44484215	51	3.5	48	80	6	199	30	23	19	26	1.98
44484034--44484219	101	1.9	100	90	1	300	30	23	19	26	1.98
44486867--44487028	43	3.8	43	79	12	156	33	25	16	25	1.96
44493567--44493719	39	3.9	39	92	0	252	23	20	32	23	1.98
44493568--44493749	39	4.6	39	89	0	247	23	21	31	23	1.98
44501653--44501805	39	3.9	39	92	0	252	23	20	32	23	1.98
44501654--44501835	39	4.6	39	89	0	247	23	21	31	23	1.98
44504532--44504596	28	2.3	28	83	2	76	27	26	3	43	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44509825--44509921	30	3.2	30	71	8	90	27	15	28	27	1.96
44510875--44510971	49	2.0	49	82	8	117	44	16	15	23	1.86
44516240--44516295	25	2.2	26	84	6	71	28	19	26	25	1.99
44516277--44516340	23	2.8	23	80	4	67	31	18	26	23	1.98
44518608--44518656	24	1.9	24	84	12	62	51	4	12	32	1.58
44519946--44520211	47	5.7	47	74	12	217	22	30	19	27	1.98
44519945--44520216	94	2.9	92	79	11	320	22	30	19	26	1.98
44520590--44520614	6	4.2	6	100	0	50	0	16	0	84	0.63
44527078--44527192	44	2.5	46	81	6	137	24	30	18	26	1.98
44527172--44527292	47	2.6	46	80	7	136	23	28	19	28	1.98
44527996--44528041	24	1.9	24	100	0	92	21	23	23	30	1.99
44534601--44534689	43	2.1	43	100	0	178	42	22	13	21	1.87
44544745--44544783	7	5.6	7	100	0	78	25	0	0	74	0.82
44545791--44545836	22	2.0	22	83	4	56	45	0	2	52	1.13
44549199--44549322	47	2.8	44	78	8	133	21	29	20	28	1.98
44549338--44549373	18	2.0	18	88	0	54	30	30	19	19	1.96
44549588--44549619	17	2.0	17	88	11	50	46	18	3	31	1.65
44549817--44549873	30	1.9	30	96	0	105	24	28	14	33	1.94
44554083--44554147	29	2.2	29	97	0	121	29	16	27	26	1.97
44562115--44562179	29	2.2	29	97	0	121	29	16	27	26	1.97
44573921--44574095	40	4.5	40	91	4	270	23	23	29	24	1.99
44573921--44574095	78	2.2	78	90	6	275	23	23	29	24	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44576088--44576215	43	3.0	41	80	13	141	28	25	17	27	1.98
44577382--44577406	13	1.9	13	100	0	50	52	0	0	48	1.00
44583951--44584112	86	1.9	85	83	8	213	32	25	17	24	1.97
44586743--44586912	92	1.8	93	93	1	297	28	27	21	22	1.99
44586738--44586909	46	3.7	46	77	11	199	29	26	21	22	1.99
44587331--44587390	30	2.0	30	86	0	84	31	25	6	36	1.82
44600918--44601043	40	3.2	39	80	6	139	21	25	24	28	1.99
44600857--44601043	80	2.3	80	78	12	204	23	27	23	25	2.00
44605312--44605382	37	1.9	37	100	0	142	22	33	22	21	1.97
44605310--44605396	37	2.3	36	90	5	138	25	33	20	20	1.97
44605465--44605686	49	4.4	49	87	9	338	31	27	8	33	1.86
44605561--44605672	56	2.0	56	96	3	208	33	26	7	33	1.84
44605465--44605686	105	2.2	98	88	8	338	31	27	8	33	1.86
44610370--44610675	47	6.6	47	71	12	170	28	21	27	22	1.99
44613922--44614118	50	3.9	50	84	1	243	25	18	26	28	1.98
44613923--44614118	49	3.9	49	84	2	239	25	18	27	29	1.98
44619055--44619127	29	2.5	29	93	0	101	26	31	16	26	1.96
44627065--44627137	29	2.5	29	93	0	101	26	31	16	26	1.96
44642930--44643092	43	3.8	43	77	12	147	25	16	24	33	1.96
44645757--44645938	51	3.7	49	81	7	174	26	19	23	30	1.98
44645753--44645938	101	1.9	101	90	1	302	26	19	23	30	1.98
44656278--44656389	43	2.6	42	87	2	161	32	16	22	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
44663878--44663975	43	2.3	42	80	3	115	29	14	26	29	1.95
44668026--44668211	40	4.6	39	78	7	162	23	27	23	25	2.00
44671265--44671367	29	3.6	29	92	2	154	26	15	32	26	1.96
44695129--44695344	39	5.5	40	88	4	298	25	28	22	24	1.99
44695162--44695348	79	2.4	79	90	3	297	26	28	21	24	1.99
44697408--44697510	29	3.6	29	92	2	154	26	15	32	26	1.96
44705484--44705586	29	3.6	29	92	2	154	26	15	32	26	1.96
44709327--44709363	2	18.0	2	94	5	65	48	0	2	48	1.15
44711028--44711136	27	4.0	26	81	8	119	39	22	22	15	1.92
44711028--44711136	54	2.0	54	83	3	139	39	22	22	15	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325