Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  131  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39561352--39561525
94
1.9
94
86
4
253
27
20
28
24
1.99
39561355--39561571
94
2.3
93
81
8
244
28
19
28
23
1.98
39567242--39567302
30
2.0
30
83
0
77
31
22
8
37
1.84
39574191--39574229
21
1.9
20
84
5
51
38
2
15
43
1.60
39586965--39587187
48
4.6
48
84
0
257
20
30
22
26
1.98
39589987--39590011
3
8.3
3
100
0
50
68
0
32
0
0.90
39592414--39592533
47
2.6
47
98
0
231
24
16
28
30
1.96
39603327--39603490
71
2.3
71
98
0
319
34
17
28
18
1.94
39610864--39611027
71
2.3
71
97
0
310
34
18
28
18
1.95
39616832--39616907
26
2.9
26
92
0
116
38
21
5
35
1.76
39619467--39619512
2
24.5
2
87
12
71
45
0
0
54
0.99
39622824--39622867
18
2.4
18
84
0
61
50
15
6
27
1.70
39624959--39624994
15
2.2
17
90
9
58
61
16
5
16
1.53
39630064--39630423
47
7.7
45
71
12
210
30
20
27
22
1.98
39630066--39630422
94
3.8
92
76
10
332
30
19
27
22
1.98
39647289--39647345
30
1.9
30
100
0
114
64
7
0
28
1.19
39650334--39650540
22
9.9
20
70
24
92
61
1
2
34
1.18
39650345--39650384
19
2.2
18
90
4
62
62
2
5
30
1.29
39650380--39650613
16
14.3
16
68
25
102
61
1
1
35
1.16
39650376--39650528
45
3.3
44
75
18
150
62
1
1
35
1.12
39650346--39650528
94
2.0
93
84
9
239
61
1
2
34
1.18
39650284--39650544
125
2.1
123
80
12
304
60
2
3
33
1.26
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39650566--39650613
2
26.5
2
76
19
52
58
0
0
41
0.98
39650392--39650609
56
3.8
55
70
18
149
61
1
1
34
1.17
39652267--39652743
120
4.0
120
93
0
778
31
19
15
33
1.93
39652267--39652743
239
2.0
239
91
0
776
31
19
15
33
1.93
39660692--39660741
15
3.5
15
82
15
61
42
10
24
24
1.85
39664488--39664524
20
1.9
18
89
10
56
59
16
0
24
1.37
39664694--39664733
19
2.1
19
86
9
55
57
0
7
35
1.27
39664921--39665123
3
64.7
3
68
23
91
61
1
3
33
1.22
39664929--39665110
22
8.8
20
69
23
78
62
1
3
32
1.21
39664940--39664979
19
2.2
18
90
4
62
62
2
5
30
1.29
39664880--39665132
123
2.0
122
82
10
300
59
2
3
34
1.27
39665670--39665694
8
3.1
8
100
0
50
12
64
24
0
1.27
39666799--39666841
22
2.0
22
95
0
77
34
32
0
32
1.58
39670495--39670536
5
8.4
5
86
0
57
38
2
4
54
1.34
39672742--39672850
39
2.8
40
80
2
130
27
22
25
23
2.00
39675792--39675958
40
4.2
40
82
2
185
25
27
21
25
1.99
39675792--39675958
80
2.1
79
83
7
205
25
27
21
25
1.99
39676783--39676828
17
2.5
19
74
22
53
34
23
17
23
1.96
39683786--39683950
40
4.2
40
80
7
169
25
27
20
26
1.99
39683786--39683950
79
2.1
78
83
7
201
25
27
20
26
1.99
39684770--39684815
17
2.5
19
74
22
53
34
23
17
23
1.96
39688706--39688872
40
4.2
40
79
2
158
23
27
22
26
2.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39691280--39691465
40
4.7
40
87
5
227
25
25
22
26
2.00
39698504--39698611
33
3.3
33
75
11
114
31
18
24
25
1.97
39698501--39698643
65
2.2
66
91
1
225
32
16
23
27
1.96
39701897--39702070
49
3.6
50
74
9
164
22
27
20
29
1.99
39702044--39702164
46
2.6
46
98
0
233
24
26
14
33
1.94
39701954--39702215
140
1.9
143
81
2
332
23
25
18
32
1.97
39706007--39706089
28
3.0
28
96
0
157
48
19
0
32
1.49
39708956--39709149
53
3.6
55
76
2
169
21
23
19
35
1.96
39715162--39715368
53
3.8
54
76
1
200
20
24
17
37
1.94
39717698--39717731
16
2.1
16
100
0
68
38
20
17
23
1.93
39719375--39720435
291
3.6
293
76
9
954
37
12
14
36
1.84
39722477--39722643
40
4.2
39
81
5
176
25
26
21
26
1.99
39722477--39722643
80
2.1
79
83
5
203
25
26
21
26
1.99
39723470--39723515
17
2.5
19
74
22
53
34
23
17
23
1.96
39725198--39725354
10
17.4
9
66
17
60
62
1
2
33
1.20
39725211--39725259
19
2.5
20
80
6
55
61
4
2
32
1.26
39725198--39725280
26
3.2
25
79
12
78
66
2
1
30
1.12
39725255--39725285
14
2.2
14
100
0
62
67
0
0
32
0.91
39725200--39725335
68
2.0
69
81
9
163
61
1
2
34
1.17
39725283--39725323
19
2.1
19
86
13
57
60
0
4
34
1.18
39725326--39725368
21
2.0
21
86
8
61
58
6
6
27
1.50
39725610--39725664
19
3.0
18
82
10
67
30
5
0
63
1.17
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39725620--39725662
10
4.6
9
83
11
59
30
4
0
65
1.13
39725643--39725722
29
2.7
29
74
16
83
38
2
1
57
1.20
39725894--39725945
23
2.3
23
90
3
79
34
3
19
42
1.69
39728099--39728131
17
1.9
17
88
11
50
57
0
30
12
1.35
39739784--39739830
21
2.3
21
85
3
60
25
21
12
40
1.89
39740409--39740460
13
4.2
13
75
9
56
71
0
1
26
0.97
39740404--39740455
25
2.1
27
86
13
76
76
0
1
21
0.87
39741903--39741931
14
2.1
14
100
0
58
58
6
6
27
1.50
39750376--39750434
12
5.2
12
80
12
61
23
0
10
66
1.22
39750417--39750466
26
2.0
26
88
7
77
34
0
4
62
1.14
39752485--39752619
69
2.0
68
85
7
184
18
19
22
40
1.92
39752657--39753046
69
5.7
67
76
6
210
17
19
22
40
1.91
39752760--39753081
69
4.7
69
82
2
369
16
20
24
39
1.92
39757449--39757666
40
5.5
40
86
4
266
22
22
28
26
1.99
39759066--39759203
66
2.1
65
82
4
161
21
28
28
22
1.99
39774886--39775089
104
2.0
104
84
3
268
29
19
17
33
1.95
39775457--39775487
16
1.9
16
93
0
53
38
16
0
45
1.47
39778221--39778295
33
2.3
33
97
0
141
14
8
34
42
1.75
39778232--39778307
33
2.3
33
93
0
125
15
10
35
38
1.82
39778232--39778327
33
2.9
33
87
4
113
16
10
35
37
1.83
39783685--39783738
22
2.5
22
93
0
99
20
37
31
11
1.88
39788516--39788554
19
2.1
19
85
0
51
28
15
41
15
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39799669--39799757
19
4.8
19
72
15
71
37
1
0
61
1.03
39799660--39799733
20
3.8
20
76
16
66
33
1
0
64
1.02
39799660--39799716
28
1.9
31
86
10
84
31
1
0
66
1.02
39799660--39799731
28
2.4
30
82
11
78
33
1
0
65
1.02
39799718--39799775
25
2.3
26
84
3
73
43
1
0
55
1.10
39810503--39810665
40
4.1
40
82
3
202
25
22
26
25
2.00
39812599--39812669
26
2.7
26
86
0
88
25
29
18
26
1.98
39815550--39815879
144
2.3
144
86
4
452
25
30
17
25
1.97
39815550--39815866
48
6.6
48
81
4
361
25
30
17
25
1.97
39822323--39822370
23
2.0
23
84
8
60
20
14
8
56
1.64
39823914--39824058
40
3.6
40
87
5
159
26
26
22
24
2.00
39835971--39836095
43
2.9
44
83
7
159
29
28
16
26
1.96
39836229--39836258
2
15.5
2
93
6
53
53
0
0
46
1.00
39839370--39839508
31
4.5
31
86
4
192
20
41
29
8
1.82
39841110--39841144
17
2.1
17
94
0
61
45
22
5
25
1.74
39842156--39842264
50
2.2
50
96
1
200
42
12
12
32
1.81
39843450--39843478
15
1.9
15
100
0
58
55
24
0
20
1.44
39849717--39849749
2
16.5
2
93
0
57
51
0
0
48
1.00
39860748--39860795
2
24.0
2
91
0
78
45
0
2
52
1.12
39861277--39861328
26
2.0
26
82
10
63
59
1
0
38
1.08
39870047--39870086
18
2.3
18
87
12
57
50
12
10
27
1.72
39870659--39870698
19
2.1
19
100
0
80
55
20
0
25
1.44
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
39870873--39871005
40
3.3
39
86
2
185
45
25
16
12
1.83
39870859--39871029
80
2.1
80
88
2
245
45
25
15
13
1.83
39870873--39871022
40
3.8
40
76
10
137
45
24
16
14
1.84
39876254--39876352
28
3.5
29
82
6
114
28
15
26
30
1.96
39883943--39884041
28
3.5
29
82
6
114
28
15
26
30
1.96
39891317--39891400
42
2.0
42
97
0
159
30
8
28
32
1.87
39891604--39891744
27
5.2
26
82
6
165
17
22
23
36
1.95
39891604--39891744
54
2.6
53
89
2
210
17
22
23
36
1.95
39894396--39894448
26
2.0
26
88
0
79
54
13
13
18
1.70
39915381--39915505
40
3.1
41
82
5
157
45
25
13
15
1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325