genome.fa.s4.2.7.7.80.10.50.1000.107.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  107  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31631918--31632008	27	3.4	27	89	4	123	34	19	25	20	1.97
31633167--31633214	25	1.9	25	82	0	60	33	22	16	27	1.96
31633257--31633317	20	3.0	20	92	0	104	34	11	21	32	1.89
31633367--31633508	24	6.0	24	90	5	200	28	21	22	26	1.99
31633367--31633508	47	3.0	47	89	6	198	28	21	22	26	1.99
31634790--31634963	87	2.0	87	93	0	294	18	22	14	44	1.86
31642135--31642172	20	2.0	20	90	10	62	5	39	0	55	1.23
31644167--31644298	29	4.6	29	91	0	201	25	32	15	26	1.95
31644109--31644299	87	2.2	87	80	3	206	26	33	15	24	1.95
31648365--31648465	51	2.0	51	92	0	166	21	22	22	32	1.98
31656250--31656276	12	2.2	12	100	0	54	29	48	14	7	1.71
31658585--31658627	22	2.0	22	85	0	59	18	27	32	20	1.96
31660942--31660976	17	2.1	17	100	0	70	28	17	0	54	1.43
31663767--31663798	13	2.5	13	94	0	55	46	25	0	28	1.53
31689290--31689407	39	3.0	39	89	0	191	23	31	19	25	1.98
31692599--31692876	27	10.3	27	80	7	244	26	16	19	38	1.92
31692611--31692880	81	3.3	82	84	4	361	26	15	19	38	1.91
31693207--31693257	18	2.8	18	79	8	68	23	19	11	45	1.83
31694781--31694850	27	2.6	27	95	2	122	30	27	14	28	1.95
31699211--31699270	19	3.2	19	97	0	111	41	13	15	30	1.85
31705008--31705066	29	2.1	28	84	9	75	38	0	22	38	1.54
31706171--31706335	43	3.9	43	80	4	156	25	21	29	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31706226--31706415	43	4.6	41	74	10	118	27	20	27	23	1.99
31706312--31706416	40	2.6	40	77	4	113	28	20	27	23	1.99
31707887--31708056	91	1.9	92	92	1	288	28	30	20	20	1.98
31707881--31708056	46	3.9	44	77	11	158	29	29	20	20	1.98
31715444--31715613	91	1.9	92	94	1	306	28	29	21	20	1.98
31715437--31715610	46	3.8	46	79	13	205	29	29	21	20	1.98
31715445--31715629	46	4.0	46	72	19	136	28	29	21	21	1.98
31718982--31719007	12	2.2	12	100	0	52	23	30	30	15	1.95
31730619--31730781	25	6.6	25	72	14	90	16	24	22	36	1.94
31730617--31730685	26	2.8	23	85	10	84	14	23	23	39	1.91
31730742--31730786	23	2.0	23	90	0	72	11	24	28	35	1.90
31732937--31733030	25	3.8	25	77	2	91	26	21	22	29	1.99
31735273--31735448	46	3.8	46	77	10	178	30	28	19	21	1.98
31735282--31735451	93	1.8	93	90	0	277	28	28	20	22	1.99
31735319--31735467	46	3.2	45	72	20	139	28	28	19	23	1.98
31740352--31740535	79	2.3	80	79	4	176	24	30	23	20	1.98
31740428--31740535	40	2.7	40	86	0	135	21	30	25	23	1.99
31748692--31748926	50	4.7	50	82	5	262	30	16	22	31	1.95
31749163--31749195	16	2.0	17	94	5	59	36	9	12	42	1.74
31750648--31750672	13	1.9	13	100	0	50	24	20	8	48	1.76
31761940--31761982	21	2.0	21	100	0	86	34	13	23	27	1.93
31769227--31769277	8	6.1	8	80	13	50	60	0	1	37	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31769236--31769289	12	4.7	12	76	17	60	61	0	3	35	1.14
31769228--31769291	20	3.5	20	76	24	86	62	0	3	34	1.11
31769228--31769294	5	13.6	5	73	25	54	62	0	2	34	1.10
31769228--31769297	34	2.1	34	97	0	131	64	0	2	32	1.08
31772382--31772421	19	2.3	18	87	12	57	25	5	10	60	1.49
31772385--31772427	20	2.2	19	84	12	52	23	4	13	58	1.55
31773223--31773279	3	19.0	3	100	0	114	66	0	0	33	0.92
31775193--31776093	207	4.4	207	93	0	1554	27	22	18	31	1.97
31787331--31787461	46	2.8	46	88	0	190	23	20	25	29	1.99
31797554--31797583	14	2.1	14	93	0	51	40	16	13	30	1.87
31800134--31800301	40	4.2	40	79	6	171	26	22	26	25	2.00
31811813--31811913	28	3.5	28	86	6	114	29	13	26	29	1.94
31819767--31819867	28	3.5	28	86	6	114	29	13	26	29	1.94
31824303--31824400	49	2.0	49	100	0	196	32	24	18	24	1.97
31824367--31824434	30	2.3	29	97	2	127	33	26	17	22	1.96
31825702--31825922	46	4.7	48	80	9	183	24	30	17	26	1.97
31829623--31829878	127	2.0	127	100	0	512	40	19	15	24	1.90
31836178--31836251	27	2.7	27	97	0	139	18	18	22	39	1.93
31839089--31839130	20	2.1	20	95	0	75	47	14	7	30	1.71
31839787--31839816	12	2.5	12	94	0	51	6	30	40	23	1.80
31840527--31840814	40	7.2	40	78	0	245	38	17	25	19	1.93
31840527--31840814	80	3.6	80	81	2	301	38	17	25	19	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31842573--31842656	28	3.0	28	92	0	141	30	16	15	36	1.90
31846597--31846813	47	4.6	45	73	12	154	29	19	29	21	1.98
31855332--31855400	33	2.1	33	100	0	138	17	5	34	42	1.73
31857670--31857699	15	2.0	15	100	0	60	46	13	20	20	1.83
31857671--31857707	15	2.4	15	90	4	56	51	16	13	18	1.76
31863283--31863940	329	2.0	330	97	0	1255	25	18	15	39	1.91
31872589--31872650	31	2.1	30	82	17	76	29	17	8	45	1.77
31876836--31877136	49	6.3	49	93	3	506	29	29	8	32	1.86
31881185--31881735	40	13.8	40	94	0	915	26	29	20	23	1.99
31889312--31889513	40	5.1	40	75	9	148	23	24	27	24	2.00
31889311--31889462	78	1.9	79	84	5	200	25	23	26	24	2.00
31898864--31899201	123	2.8	123	95	0	588	30	10	25	33	1.90
31899170--31899413	40	6.1	40	88	1	301	24	21	26	27	1.99
31902705--31902743	20	2.0	20	94	0	69	28	7	15	48	1.72
31908069--31908300	48	4.8	48	97	1	419	32	6	26	34	1.82
31908069--31908449	48	8.0	47	88	4	337	32	7	28	31	1.86
31908274--31908478	47	4.4	47	91	0	320	32	8	29	28	1.87
31910861--31910929	33	2.1	33	97	0	129	31	13	27	27	1.93
31913434--31913524	28	3.2	28	87	0	119	27	14	34	24	1.94
31914260--31914288	14	2.0	15	93	6	51	27	0	20	51	1.47
31917935--31918003	28	2.5	28	92	2	113	20	10	26	43	1.83
31922199--31922267	28	2.5	28	92	2	113	20	10	26	43	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31925694--31925727	18	1.9	18	94	5	61	44	11	14	29	1.81
31932079--31932232	43	3.6	44	79	11	158	33	22	18	25	1.97
31935773--31936054	141	2.0	141	94	0	492	27	6	18	47	1.73
31949821--31949899	29	2.7	29	86	5	106	27	32	15	24	1.95
31952772--31953170	30	13.2	30	79	6	333	37	11	25	26	1.90
31953041--31953109	29	2.3	29	76	9	77	39	13	26	21	1.90
31955516--31955733	47	4.7	47	75	14	177	21	27	20	31	1.98
31955572--31955778	46	4.4	46	78	11	165	21	26	19	31	1.98
31960100--31960138	7	5.9	7	93	6	64	84	0	0	15	0.62
31960102--31960138	6	5.8	6	93	6	56	86	0	0	13	0.57
31960100--31960138	13	3.0	13	85	14	62	84	0	0	15	0.62
31968952--31969020	27	2.5	28	90	2	104	26	15	27	30	1.96
31968976--31969033	27	2.1	27	81	6	64	29	17	22	31	1.96
31973743--31973926	40	4.6	39	75	6	138	26	23	27	22	2.00
31973783--31973971	80	2.4	81	77	4	186	23	24	29	22	1.99
31981862--31982045	40	4.6	39	75	6	138	26	23	27	22	2.00
31981902--31982090	80	2.4	81	77	4	186	23	24	29	22	1.99
31993212--31993400	29	6.5	29	95	0	342	39	14	22	23	1.91
32001276--32001431	29	5.5	29	91	6	266	39	14	23	23	1.91
32001276--32001431	56	2.8	57	91	7	264	39	14	23	23	1.91
32011995--32012104	40	2.8	40	85	0	148	23	26	23	26	2.00
32014283--32014328	6	7.7	6	95	0	83	30	0	0	69	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32020502--32020585	43	2.0	43	83	9	109	30	29	15	23	1.95
32028864--32029074	46	4.5	45	78	10	178	28	18	29	22	1.98
32028958--32029122	47	3.5	48	84	7	182	26	18	32	22	1.97
32028864--32029121	140	1.8	140	82	4	333	27	18	30	23	1.98
32037433--32037736	40	7.4	40	84	4	383	26	25	23	24	2.00
32037433--32037736	123	2.5	121	85	4	414	26	25	23	24	2.00
32037433--32037736	163	1.9	163	95	1	547	26	25	23	24	2.00
32039613--32039874	47	5.7	46	81	7	232	25	28	17	29	1.97
32039740--32039877	46	2.9	46	84	8	154	26	30	15	28	1.96
32045280--32045521	119	2.0	120	92	0	405	20	18	25	35	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325