genome.fa.s4.2.7.7.80.10.50.1000.161.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  161  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49422388--49422513	30	4.3	30	86	8	161	32	12	26	28	1.93
49422388--49422513	58	2.2	58	85	4	164	32	12	26	28	1.93
49430330--49430460	30	4.5	30	86	8	171	32	13	25	28	1.94
49430330--49430460	58	2.2	58	86	4	174	32	13	25	28	1.94
49433946--49434005	28	2.2	26	80	11	75	26	25	11	36	1.90
49433961--49434027	28	2.4	28	89	0	98	29	25	11	32	1.92
49436004--49436134	30	4.5	30	86	8	171	32	13	25	28	1.94
49436004--49436134	58	2.2	58	86	4	174	32	13	25	28	1.94
49439601--49439660	28	2.2	26	80	11	75	26	25	11	36	1.90
49439616--49439682	28	2.4	28	89	0	98	29	25	11	32	1.92
49440289--49440332	19	2.4	19	84	3	63	40	20	2	36	1.65
49444015--49444131	48	2.5	48	84	2	148	35	13	23	27	1.93
49444014--49444117	46	2.2	46	86	3	145	34	13	25	25	1.93
49448250--49448286	10	3.8	10	96	3	67	72	0	10	16	1.10
49453537--49453654	31	3.5	35	87	9	126	21	23	16	38	1.93
49453560--49453654	31	3.1	31	95	0	172	22	22	15	40	1.91
49453846--49454011	24	7.0	24	93	2	255	26	21	22	28	1.99
49453845--49454011	71	2.3	71	90	3	255	26	21	22	29	1.99
49454062--49454121	20	3.0	20	92	0	102	31	21	11	35	1.90
49455370--49455453	27	3.1	27	86	3	116	22	26	20	30	1.98
49455515--49455566	27	1.9	27	84	7	70	38	11	9	40	1.74
49455605--49455744	54	2.6	54	85	4	192	30	7	22	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49455605--49455744	27	5.2	27	79	8	151	30	7	22	38	1.83
49455722--49456014	27	10.9	27	80	7	276	42	8	21	27	1.81
49455696--49455909	54	4.0	54	77	8	193	43	8	18	28	1.79
49455723--49456006	81	3.5	81	85	4	342	42	8	20	28	1.81
49456011--49456109	27	3.7	27	81	5	112	30	10	20	39	1.85
49456020--49456124	27	3.9	27	75	9	72	34	9	18	38	1.83
49457731--49457794	32	2.0	32	100	0	128	28	25	28	18	1.98
49468267--49468376	40	2.8	40	84	0	139	26	22	26	24	2.00
49479670--49479711	18	2.3	18	80	8	50	30	0	26	42	1.55
49482558--49482588	15	2.1	15	94	5	55	35	19	19	25	1.95
49485446--49485616	45	3.7	46	79	11	199	22	19	28	29	1.98
49485443--49485611	92	1.8	92	92	2	286	21	20	28	28	1.98
49485840--49485877	19	2.0	20	85	15	53	36	0	23	39	1.55
49492953--49493125	46	3.7	46	79	10	208	21	20	27	29	1.98
49492950--49493120	93	1.8	93	93	0	297	21	21	28	28	1.98
49493350--49493387	19	2.0	20	85	15	53	36	0	23	39	1.55
49498614--49498731	41	3.1	41	60	28	98	32	17	28	21	1.96
49498582--49498745	71	2.3	71	100	0	328	35	17	28	18	1.94
49510823--49510989	40	4.2	40	81	2	176	24	27	22	25	2.00
49510839--49510989	80	1.9	79	83	6	198	23	27	22	25	2.00
49518826--49518992	40	4.2	40	81	2	176	24	27	22	25	2.00
49518842--49518992	80	1.9	79	83	6	198	23	27	22	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49520781--49520807	14	1.9	14	100	0	54	14	14	11	59	1.62
49526159--49526244	44	2.0	43	88	2	127	30	27	16	25	1.97
49547187--49547308	47	2.6	47	94	0	208	36	13	22	27	1.92
49547281--49547731	53	8.5	54	78	9	421	35	17	23	23	1.95
49547281--49547734	108	4.3	102	76	11	319	35	17	23	23	1.95
49547341--49547732	208	1.9	208	84	6	526	35	17	23	23	1.95
49547404--49547693	153	1.9	152	80	7	336	34	17	23	24	1.95
49547234--49547731	261	1.9	262	94	1	892	35	16	23	23	1.95
49548863--49548911	17	2.8	18	74	22	50	24	18	22	34	1.96
49549731--49549897	40	4.2	40	79	6	169	26	22	26	24	2.00
49556843--49556891	17	2.8	18	74	22	50	24	18	22	34	1.96
49557709--49557858	40	3.8	39	80	7	162	26	22	27	24	1.99
49578993--49579160	40	4.2	40	85	5	207	26	28	22	23	1.99
49578993--49579160	80	2.1	80	87	4	241	26	28	22	23	1.99
49586964--49587087	39	3.2	38	82	6	108	28	29	20	21	1.98
49586977--49587143	40	4.2	40	83	6	198	26	28	21	23	1.99
49586977--49587143	79	2.1	79	86	5	230	26	28	21	23	1.99
49592846--49592886	19	2.2	19	95	0	73	41	4	2	51	1.36
49593466--49593605	47	3.0	47	88	4	219	28	14	14	42	1.84
49594413--49594574	45	3.6	45	85	3	195	24	21	27	26	1.99
49594522--49594628	41	2.6	41	83	8	119	27	20	30	21	1.98
49596622--49596695	29	2.6	29	95	0	139	27	14	31	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49596679--49596754	29	2.6	29	78	0	89	22	19	35	22	1.96
49596622--49596754	58	2.3	58	80	2	133	24	17	33	24	1.96
49604495--49604568	29	2.6	29	95	0	139	27	14	31	27	1.95
49604552--49604627	29	2.6	29	78	0	89	22	19	35	22	1.96
49604495--49604627	58	2.3	58	80	2	133	24	17	33	24	1.96
49606066--49606098	16	1.9	18	88	11	52	24	15	12	48	1.78
49607338--49607513	51	3.5	51	83	3	158	29	29	15	25	1.96
49617834--49618098	47	5.7	46	74	13	204	22	29	19	29	1.98
49617838--49618098	46	5.6	46	78	9	201	22	29	19	29	1.98
49621151--49621326	50	3.5	49	84	3	181	29	27	17	25	1.97
49621151--49621334	101	1.8	99	84	2	251	28	28	17	25	1.98
49623025--49623063	15	2.6	15	95	0	69	56	23	15	5	1.59
49625412--49625655	55	4.8	49	80	7	254	29	27	17	25	1.98
49625425--49625655	50	4.5	48	79	10	219	29	27	17	25	1.97
49625412--49625655	101	2.4	100	82	6	285	29	27	17	25	1.98
49627720--49627790	27	2.6	27	75	4	72	36	26	7	29	1.83
49627774--49627897	27	4.6	27	83	2	160	42	19	7	30	1.78
49627758--49627869	54	2.1	53	81	8	136	40	22	6	31	1.79
49627774--49627897	54	2.3	54	91	0	194	42	19	7	30	1.78
49627880--49627941	27	2.3	27	91	0	97	40	16	16	27	1.89
49627774--49627923	54	2.8	54	84	4	151	42	18	9	30	1.82
49627774--49627926	81	1.9	81	85	5	211	41	18	9	30	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49628561--49628657	28	3.5	28	88	4	144	44	26	8	20	1.80
49635340--49635477	47	2.9	47	83	7	165	21	28	18	31	1.97
49641838--49641907	27	2.5	28	93	2	115	27	14	28	30	1.95
49641838--49641919	27	3.0	27	84	8	69	28	15	25	30	1.96
49649773--49649842	27	2.5	28	93	2	115	27	14	28	30	1.95
49649773--49649854	27	3.0	27	84	8	69	28	15	25	30	1.96
49654839--49654938	28	3.6	28	74	5	94	26	29	14	31	1.94
49660951--49661121	40	4.3	39	77	10	159	28	21	26	23	1.99
49671424--49671571	79	1.9	80	81	4	183	22	31	24	21	1.99
49671464--49671571	40	2.7	40	86	0	135	21	30	25	23	1.99
49690739--49690922	40	4.6	39	75	6	138	26	23	27	22	2.00
49690779--49690967	80	2.4	81	77	4	186	23	24	29	22	1.99
49692371--49692470	40	2.5	40	96	0	182	29	27	20	24	1.99
49694407--49694581	46	3.8	46	73	13	178	30	29	19	21	1.97
49694414--49694585	93	1.8	93	91	0	281	29	29	19	21	1.98
49705147--49705307	42	3.8	42	77	8	157	28	13	26	31	1.94
49706651--49706837	40	4.7	40	91	2	288	26	29	20	23	1.99
49714419--49714605	40	4.7	40	90	2	270	26	28	20	24	1.99
49718639--49718665	13	2.1	13	100	0	54	22	33	0	44	1.53
49721729--49721986	40	6.5	40	96	0	464	27	24	22	25	2.00
49723498--49723523	13	2.0	13	100	0	52	61	7	0	30	1.24
49731846--49731915	27	2.5	28	95	2	124	28	11	27	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
49731846--49731927	27	3.0	27	87	5	76	29	13	24	32	1.93
49739874--49739953	29	2.7	29	86	5	108	27	32	15	25	1.95
49745249--49745328	29	2.7	29	86	5	108	27	32	15	25	1.95
49747648--49747678	8	3.9	8	91	0	53	54	9	22	12	1.67
49748334--49748426	34	2.8	33	85	4	107	23	22	24	29	1.99
49750923--49751072	42	3.6	42	74	7	133	30	14	25	30	1.95
49760061--49760232	46	3.7	46	77	13	181	20	18	29	30	1.97
49760054--49760225	93	1.8	93	91	0	281	21	19	29	29	1.98
49763737--49763820	43	1.9	44	92	2	143	19	21	30	28	1.97
49767278--49767316	18	2.2	18	86	9	53	15	46	25	12	1.81

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325