genome.fa.s4.2.7.7.80.10.50.1000.153.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  153  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46743410--46743619	40	5.2	40	87	2	305	25	24	28	21	1.99
46751461--46751602	40	3.5	40	83	1	124	27	23	26	21	1.99
46751500--46751612	40	2.8	39	86	5	145	23	23	28	23	2.00
46757929--46758088	49	3.3	49	92	1	252	30	30	8	31	1.86
46760263--46760382	43	2.8	42	84	9	163	30	16	25	27	1.97
46762814--46762867	14	3.9	14	78	7	65	74	3	20	1	1.07
46764177--46764223	16	2.9	17	78	21	64	57	8	0	34	1.29
46764194--46764222	14	2.1	14	100	0	58	55	6	0	37	1.27
46765821--46766104	50	5.8	50	81	6	323	27	18	29	24	1.98
46775763--46775832	27	2.5	28	97	2	133	28	12	27	31	1.93
46783391--46783460	27	2.5	28	97	2	133	28	12	27	31	1.93
46791943--46792019	39	1.9	40	89	7	120	23	20	24	31	1.98
46813039--46813085	24	1.9	25	82	4	60	23	10	38	27	1.88
46814490--46814645	27	5.8	27	82	3	190	37	21	11	28	1.89
46814490--46814643	53	2.9	53	83	4	202	38	22	11	28	1.88
46814490--46814642	80	1.9	81	93	1	263	38	21	11	28	1.88
46820996--46821074	25	3.3	25	64	10	74	32	27	5	34	1.79
46820946--46821217	49	5.7	48	92	2	397	27	29	9	33	1.88
46826197--46826258	27	2.3	27	88	0	97	29	8	17	45	1.77
46829515--46829768	55	4.8	54	79	8	240	36	16	25	22	1.94
46829515--46829729	54	4.0	54	79	10	224	35	16	25	22	1.94
46829526--46829729	107	1.9	108	87	3	304	35	16	25	23	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46829839--46829885	24	1.9	25	91	4	78	42	10	25	21	1.85
46831668--46831875	40	5.2	39	84	1	218	25	25	22	25	2.00
46831668--46831873	80	2.6	81	84	3	247	25	26	22	25	2.00
46839823--46840030	40	5.2	39	84	1	218	25	25	22	25	2.00
46839823--46840028	80	2.6	81	84	3	247	25	26	22	25	2.00
46847978--46848185	40	5.2	39	84	1	218	25	25	22	25	2.00
46847978--46848183	80	2.6	81	84	3	247	25	26	22	25	2.00
46852688--46852712	2	12.5	2	100	0	50	52	0	0	48	1.00
46855694--46855735	22	2.0	22	85	4	59	42	16	16	23	1.88
46857598--46857623	9	2.9	9	100	0	52	23	11	11	53	1.69
46861688--46861730	22	2.0	22	95	0	77	30	18	11	39	1.86
46868440--46868565	47	2.6	48	85	8	157	21	15	29	34	1.94
46869081--46869214	44	3.0	44	97	0	250	25	4	23	46	1.71
46873132--46873411	48	5.9	48	96	0	481	33	7	28	30	1.84
46873130--46873411	95	2.9	96	94	1	485	33	7	29	30	1.84
46873132--46873411	143	2.0	143	94	0	488	33	7	28	30	1.84
46873554--46873651	37	2.7	37	95	1	171	24	18	32	24	1.97
46874931--46875081	40	3.8	40	92	2	243	19	23	31	25	1.98
46875091--46875216	29	4.4	28	77	5	110	20	15	28	35	1.93
46878669--46879090	48	8.9	48	96	1	733	33	7	28	30	1.84
46878669--46879090	95	4.4	96	94	1	733	33	7	28	30	1.84
46878669--46879094	142	3.0	144	94	1	750	33	7	28	30	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46879231--46879369	37	3.8	37	96	1	253	23	19	32	24	1.98
46879231--46879369	73	1.9	74	95	1	253	23	19	32	24	1.98
46883381--46883445	27	2.4	27	84	0	76	27	24	7	40	1.82
46883444--46883600	27	5.8	27	76	8	133	41	20	8	29	1.82
46883556--46883663	27	3.9	27	77	13	103	41	18	8	31	1.80
46883704--46883781	27	2.9	27	77	11	88	37	21	20	20	1.95
46886907--46886955	24	2.0	24	100	0	98	46	20	4	28	1.68
46887250--46887569	46	7.0	46	94	0	516	22	24	14	38	1.92
46891943--46892068	45	2.8	46	83	4	141	42	11	23	23	1.87
46894439--46894476	7	5.3	7	96	3	67	26	26	0	47	1.52
46895281--46895327	20	2.4	20	79	10	53	27	21	2	48	1.61
46896277--46896425	76	2.0	75	91	1	244	35	11	22	30	1.89
46896479--46896557	9	8.4	10	70	12	51	62	6	1	30	1.28
46896726--46896783	30	2.0	29	83	6	73	24	3	3	68	1.20
46897190--46897236	21	2.1	23	88	11	71	44	0	0	55	0.99
46900441--46900493	24	2.2	24	80	16	65	45	1	1	50	1.23
46911112--46911309	71	2.8	70	92	3	294	33	17	28	20	1.95
46911178--46911295	41	3.1	41	60	28	98	32	17	28	21	1.96
46911146--46911309	71	2.3	71	100	0	328	35	17	28	18	1.94
46918679--46918876	71	2.8	70	92	3	294	33	17	28	20	1.95
46918745--46918862	41	3.1	41	60	28	98	32	17	28	21	1.96
46918713--46918876	71	2.3	71	100	0	328	35	17	28	18	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46923489--46923580	26	3.5	26	73	2	85	33	28	11	26	1.92
46923461--46923606	27	5.5	27	71	8	111	33	26	13	26	1.93
46923461--46923583	53	2.3	53	97	0	228	34	26	13	26	1.93
46925562--46925732	40	4.3	39	77	10	159	28	21	26	23	1.99
46933602--46933772	40	4.3	39	77	10	159	28	21	26	23	1.99
46942156--46942189	13	2.6	13	100	0	68	23	26	41	8	1.83
46942937--46942994	24	2.4	24	80	11	73	44	6	6	41	1.58
46942949--46943000	24	2.2	24	89	0	77	48	5	5	40	1.51
46943091--46943149	29	2.0	29	83	0	73	35	33	11	18	1.88
46946314--46946357	23	1.9	23	90	0	70	52	9	4	34	1.54
46947079--46947217	69	2.0	69	90	0	215	20	21	20	38	1.94
46952056--46952101	14	3.1	15	81	9	58	30	15	4	50	1.63
46952309--46952454	61	2.4	61	85	0	211	32	21	13	32	1.92
46955428--46955452	2	12.5	2	100	0	50	48	0	0	52	1.00
46955609--46955663	25	2.2	26	83	3	67	29	5	1	63	1.27
46956511--46956537	13	2.1	13	100	0	54	62	22	0	14	1.31
46958662--46958973	46	7.0	46	86	7	394	22	23	14	39	1.91
46958886--46958961	38	2.0	38	97	0	143	22	26	17	34	1.96
46961111--46961162	11	4.7	11	76	9	52	63	3	0	32	1.12
46962832--46962885	19	2.8	19	88	5	74	27	18	5	48	1.70
46970984--46971580	44	13.0	44	71	12	292	32	18	19	29	1.96
46971341--46971509	45	3.6	45	75	12	160	34	19	17	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46971386--46971582	51	4.0	51	75	10	201	35	18	17	28	1.93
46971341--46971574	96	2.4	96	92	0	378	35	18	17	28	1.94
46982786--46982882	30	3.2	30	73	2	88	28	13	27	29	1.94
46984992--46985076	30	2.8	30	84	7	118	12	21	1	64	1.34
46985027--46985082	18	3.1	18	79	5	60	7	17	3	71	1.23
46984990--46985076	12	7.2	12	71	5	59	12	20	1	65	1.32
46985163--46985211	20	2.4	20	83	13	64	0	16	4	79	0.88
46986107--46986148	12	3.6	11	87	9	57	21	2	9	66	1.32
46987824--46987911	30	2.9	30	74	0	86	28	12	27	31	1.93
46990870--46990907	19	2.0	19	89	0	58	34	5	15	44	1.69
46992636--46992734	28	3.5	28	81	9	112	29	25	16	29	1.96
47000309--47000407	28	3.5	28	81	9	112	29	25	16	29	1.96
47005261--47005288	13	2.2	13	100	0	56	46	25	7	21	1.76
47007236--47007465	49	4.7	48	85	4	282	30	27	16	25	1.96
47009604--47009635	11	2.8	12	90	9	57	37	0	0	62	0.95
47011424--47011449	2	13.0	2	100	0	52	50	0	0	50	1.00
47014854--47014917	31	2.1	31	87	0	92	26	21	15	35	1.94
47015110--47015252	24	6.0	24	91	7	220	28	20	20	29	1.98
47015110--47015252	47	3.0	49	89	8	222	28	20	20	29	1.98
47015110--47015247	71	1.9	72	91	7	228	28	21	21	27	1.99
47015306--47015365	20	3.0	20	95	0	111	33	20	11	35	1.88
47017643--47017778	46	3.0	46	84	1	175	27	30	8	33	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
47017752--47018085	47	7.0	47	89	4	445	27	29	11	31	1.91
47017842--47017916	22	3.3	22	64	29	57	25	32	14	28	1.95
47024148--47024189	21	2.0	21	95	0	75	30	9	21	38	1.85
47024505--47024681	67	2.6	67	82	7	182	32	15	28	22	1.95
47027375--47027408	16	2.1	17	89	10	54	23	14	0	61	1.33
47031185--47031223	19	2.1	19	100	0	78	25	15	25	33	1.95
47036175--47036256	24	3.4	24	78	8	69	17	18	20	43	1.88
47039928--47040236	46	6.6	47	75	13	205	26	19	29	24	1.98
47040106--47040297	48	4.0	48	77	6	192	27	18	27	26	1.98
47040107--47040291	96	1.9	98	82	4	232	26	19	28	25	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325