Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  170  of  325  ( 38914 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52387596--52387717
47
2.6
47
92
2
201
26
22
13
37
1.91
52387740--52387841
45
2.2
45
81
6
107
22
25
20
31
1.98
52387854--52387940
44
2.0
44
81
4
104
22
27
12
36
1.91
52389212--52389251
19
2.1
19
85
0
53
25
35
17
22
1.95
52390899--52390950
12
4.7
11
86
11
63
78
5
3
11
1.05
52390911--52390950
20
2.0
21
95
5
73
80
5
5
10
1.02
52396116--52396155
19
2.1
19
85
0
53
25
35
17
22
1.95
52397182--52397289
42
2.5
42
98
1
207
33
12
13
39
1.83
52397272--52397316
14
3.3
14
84
6
65
37
0
13
48
1.42
52399739--52400006
80
3.3
80
88
2
360
24
25
23
26
2.00
52399741--52400007
40
6.7
40
83
1
302
24
25
23
26
2.00
52413095--52413180
46
1.9
45
88
4
129
32
29
17
20
1.96
52413592--52413651
30
2.0
30
90
0
93
30
25
8
36
1.85
52420555--52420725
93
1.8
93
96
0
315
28
28
21
21
1.99
52420550--52420722
46
3.7
46
78
13
210
28
27
21
21
1.99
52421142--52421201
30
2.0
30
90
0
93
30
25
8
36
1.85
52423258--52423354
30
3.2
31
76
5
110
28
27
14
28
1.95
52424209--52424257
20
2.3
20
82
10
53
32
8
14
44
1.74
52426897--52426994
30
3.3
30
75
0
97
29
16
26
27
1.97
52429196--52429278
30
2.7
30
81
9
89
13
21
1
63
1.35
52429229--52429284
18
3.1
18
76
5
51
7
19
3
69
1.27
52429254--52429278
12
2.1
12
100
0
50
8
16
0
76
1.02
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52429281--52429311
12
2.6
12
94
0
53
29
16
9
45
1.79
52429358--52429412
5
11.0
5
77
14
60
1
16
3
78
0.98
52429358--52429419
15
4.2
13
82
17
61
1
16
4
77
1.02
52429362--52429408
24
1.9
25
87
12
71
2
14
4
78
0.99
52432030--52432126
30
3.2
30
79
2
106
29
15
25
28
1.96
52436774--52437056
49
5.8
49
94
0
471
28
28
9
33
1.88
52439485--52439513
2
14.5
2
100
0
58
51
0
0
48
1.00
52441433--52441575
69
2.1
70
93
1
243
39
18
18
23
1.93
52442099--52442171
32
2.3
32
85
0
92
32
19
9
38
1.84
52442289--52442362
28
2.6
28
89
4
105
22
33
16
27
1.95
52449226--52449645
47
9.1
47
83
9
506
31
12
29
26
1.92
52449248--52449398
51
3.0
51
91
3
229
30
12
29
27
1.93
52449366--52449431
33
2.0
33
100
0
132
33
12
24
30
1.91
52449315--52449471
84
1.9
84
98
0
305
31
12
27
28
1.93
52449371--52449439
33
2.2
30
87
10
95
31
8
24
34
1.86
52449434--52449508
22
3.3
22
64
29
57
30
13
30
25
1.94
52449619--52449754
46
3.0
46
87
0
182
34
8
30
25
1.87
52449899--52450043
37
3.9
37
94
0
245
24
19
30
26
1.98
52452937--52452968
11
2.6
13
90
9
50
75
9
6
9
1.20
52459747--52460111
40
9.1
40
88
1
545
25
21
26
26
1.99
52463640--52464026
47
8.1
47
92
2
567
31
12
29
26
1.93
52463815--52463889
22
3.3
22
64
29
57
30
13
30
25
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52464000--52464136
46
3.0
46
89
0
193
35
9
30
24
1.87
52464280--52464424
37
3.9
37
94
0
245
24
19
30
26
1.98
52466189--52466219
12
2.6
12
100
0
62
12
6
16
64
1.47
52469248--52469280
14
2.3
15
89
5
50
66
18
0
15
1.25
52473152--52473203
27
1.9
27
88
0
77
23
21
13
42
1.88
52474519--52474553
17
2.1
17
100
0
70
51
5
11
31
1.61
52475779--52475944
43
3.9
43
72
13
119
31
25
17
24
1.97
52479630--52479758
43
3.0
42
71
15
102
25
14
27
32
1.95
52481004--52481045
21
2.0
21
85
0
57
21
16
42
19
1.89
52484899--52484928
15
2.0
15
93
0
51
33
23
6
36
1.81
52492476--52492523
14
3.4
14
85
0
60
43
6
31
18
1.75
52495913--52495995
30
2.7
31
77
5
98
13
21
1
63
1.35
52495960--52496001
18
2.3
19
83
4
50
9
19
2
69
1.28
52495971--52495995
12
2.1
12
100
0
50
8
16
0
76
1.02
52495998--52496028
12
2.6
12
94
0
53
29
16
9
45
1.79
52496076--52496132
5
11.0
5
75
20
55
3
17
1
77
1.00
52496076--52496132
16
3.7
14
82
15
60
3
17
1
77
1.00
52496076--52496143
21
3.2
21
76
15
61
2
17
2
76
1.04
52497457--52497504
14
3.4
14
85
0
60
43
6
31
18
1.75
52498732--52498813
30
2.7
30
73
0
83
28
17
26
28
1.97
52498731--52498828
30
3.3
30
71
5
81
30
16
25
27
1.96
52504456--52504521
30
2.2
29
86
2
96
36
24
16
22
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52507193--52507336
49
2.9
50
85
2
200
26
20
27
25
1.99
52509966--52510005
19
2.1
19
86
9
55
27
35
15
22
1.94
52511246--52511293
14
3.4
14
85
0
60
18
31
6
43
1.75
52511603--52511646
21
2.0
22
86
4
63
34
34
6
25
1.82
52518698--52518727
11
2.6
11
94
5
51
73
0
10
16
1.09
52524175--52524234
30
2.0
29
93
3
102
36
23
15
25
1.93
52527476--52527606
48
2.7
49
79
4
149
25
19
29
25
1.98
52534226--52534339
49
2.3
48
80
5
113
31
17
26
24
1.97
52536255--52536292
18
2.2
18
86
13
53
21
2
15
60
1.47
52537883--52537913
15
2.0
16
93
6
55
58
0
6
35
1.24
52540175--52540217
16
2.6
17
81
7
61
79
0
13
6
0.93
52540185--52540214
8
3.8
8
100
0
60
76
0
13
10
1.01
52544234--52544304
33
2.2
33
87
5
99
32
25
19
22
1.98
52544279--52544330
27
1.9
26
85
14
70
32
28
23
15
1.95
52557442--52557498
30
1.9
30
88
0
87
42
8
21
28
1.82
52559458--52559554
30
3.2
30
79
2
115
28
16
26
27
1.97
52561659--52561741
30
2.7
30
81
9
89
12
21
1
65
1.33
52561744--52561774
12
2.6
12
100
0
62
25
16
12
45
1.83
52561822--52561885
16
4.2
14
74
16
56
1
15
4
78
1.00
52561839--52561889
21
2.4
21
81
15
61
0
15
5
78
0.93
52562793--52562852
11
5.7
11
77
16
65
13
6
3
76
1.11
52564604--52564688
30
2.8
30
68
7
82
25
16
28
29
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52565048--52565194
68
2.2
64
81
8
161
30
15
27
26
1.96
52565198--52565387
50
3.8
49
86
1
236
26
18
26
28
1.98
52565198--52565387
99
1.9
101
86
2
276
26
18
26
28
1.98
52572451--52572487
18
2.0
19
89
5
58
21
10
13
54
1.69
52579222--52579246
13
1.9
13
100
0
50
36
16
32
16
1.90
52585944--52585988
24
1.9
23
82
13
56
33
26
6
33
1.83
52587970--52588142
93
1.9
93
88
2
267
31
29
17
20
1.96
52587963--52588138
46
3.8
45
75
14
162
32
28
17
20
1.96
52589813--52589860
20
2.4
20
67
0
51
20
27
18
33
1.96
52596615--52596641
10
2.7
10
100
0
54
18
11
29
40
1.85
52602492--52602539
15
3.3
15
73
5
53
29
0
27
43
1.55
52602486--52602529
14
3.1
14
74
6
52
27
0
34
38
1.57
52602486--52602545
29
2.1
29
93
0
102
28
0
30
41
1.56
52603522--52603566
14
3.3
14
78
6
56
48
15
0
35
1.45
52604301--52604397
30
3.2
30
72
8
81
29
15
26
27
1.96
52606487--52606555
28
2.5
28
95
2
122
18
10
27
43
1.82
52608181--52608218
20
1.9
20
88
0
58
52
10
2
34
1.50
52614493--52614561
28
2.5
28
95
2
122
18
10
27
43
1.82
52616189--52616226
20
1.9
20
88
0
58
52
10
2
34
1.50
52617558--52617717
51
3.2
51
86
7
211
7
16
3
72
1.22
52617632--52617717
27
3.3
27
70
15
81
9
17
3
69
1.29
52620184--52620214
14
2.2
14
94
0
53
54
0
32
12
1.38
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
52620513--52620558
19
2.4
19
85
3
56
23
34
17
23
1.96
52623895--52624081
71
2.7
68
93
5
281
18
28
18
34
1.95
52623918--52624081
71
2.3
71
100
0
328
18
28
17
35
1.94
52623918--52624115
71
2.8
70
92
3
276
20
28
17
33
1.95
52625653--52625684
11
2.6
13
90
9
50
75
9
6
9
1.20
52632968--52633015
14
3.4
14
85
0
60
18
31
6
43
1.75
52633366--52633407
11
3.7
11
83
3
57
80
4
4
9
0.99
52638597--52638635
18
2.1
18
85
4
51
25
35
15
23
1.94
52639853--52639900
14
3.4
14
85
0
60
18
31
6
43
1.75
52643088--52643181
38
2.4
38
92
1
152
21
23
18
37
1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325