genome.fa.s4.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  119  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35753102--35753158	30	1.9	30	96	0	105	33	12	26	28	1.92
35753494--35753665	46	3.7	46	79	9	188	27	16	30	25	1.97
35753494--35753763	47	5.8	47	78	11	234	27	18	30	23	1.98
35753494--35753761	140	1.9	141	85	3	371	27	18	30	23	1.98
35754698--35754776	41	1.9	42	81	2	97	20	20	40	18	1.92
35767970--35768129	29	5.5	29	82	4	180	25	31	16	26	1.97
35776050--35776207	29	5.4	29	82	4	176	25	31	17	26	1.97
35781032--35781238	53	3.8	53	78	5	218	20	23	17	38	1.93
35781044--35781238	54	3.6	53	78	6	203	20	23	18	37	1.94
35787842--35787953	29	3.9	29	78	1	118	25	15	33	25	1.95
35792390--35792542	39	3.9	39	96	0	270	23	20	32	24	1.98
35792397--35792578	39	4.6	40	91	0	154	22	21	31	23	1.98
35794717--35794884	40	4.2	40	80	12	175	23	22	27	26	1.99
35794717--35794884	80	2.1	79	86	4	230	23	22	27	26	1.99
35798515--35798543	12	2.4	12	100	0	58	6	27	41	24	1.80
35804568--35804608	16	2.6	16	96	0	73	24	24	0	51	1.49
35806889--35806958	27	2.6	27	95	2	122	30	27	14	28	1.95
35813762--35813815	27	2.0	27	85	7	74	22	27	18	31	1.97
35826190--35826319	40	3.2	40	84	4	174	23	29	24	22	1.99
35829885--35829909	2	12.5	2	100	0	50	52	0	0	48	1.00
35835865--35835901	17	2.2	17	90	0	56	24	5	24	45	1.74
35836175--35836231	16	3.5	16	71	9	53	28	12	14	45	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35840062--35840109	2	24.5	2	89	4	71	52	2	0	45	1.12
35841119--35841179	18	3.3	18	80	17	63	50	4	3	40	1.40
35840813--35841264	242	1.9	232	86	5	636	46	7	9	36	1.64
35841331--35841374	16	2.6	17	82	7	54	45	2	2	50	1.27
35843730--35843780	22	2.4	22	83	3	59	41	3	0	54	1.19
35844227--35844259	14	2.4	14	95	5	59	60	0	6	33	1.21
35847821--35847878	29	2.0	29	96	0	107	41	6	12	39	1.69
35850953--35850984	15	2.0	17	88	11	50	43	31	0	25	1.55
35854526--35854586	30	2.0	30	83	0	77	31	22	8	37	1.84
35858622--35858720	39	2.5	39	83	4	119	31	24	23	21	1.98
35858623--35859083	159	2.9	158	83	3	561	28	26	22	22	1.99
35858659--35859081	40	10.7	39	84	5	424	28	26	22	22	1.99
35862105--35862282	48	3.7	47	78	4	144	21	26	21	29	1.99
35864913--35865076	71	2.3	71	97	0	310	34	18	28	18	1.95
35872451--35872613	70	2.3	71	97	1	310	34	18	28	19	1.95
35874139--35874272	67	2.0	67	98	0	259	20	14	35	29	1.93
35877948--35878234	40	7.2	40	79	5	276	35	15	29	19	1.93
35878049--35878114	20	3.3	20	69	0	60	31	16	34	16	1.92
35877961--35878234	80	3.4	80	84	2	325	36	15	29	18	1.92
35877961--35878234	121	2.3	120	85	4	356	36	15	29	18	1.92
35880418--35880546	29	4.4	29	94	1	206	28	15	30	25	1.96
35880418--35880606	29	6.5	29	90	2	170	26	16	31	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35880418--35880606	58	3.3	59	85	4	190	26	16	31	24	1.96
35880443--35880606	87	1.9	87	82	5	206	26	16	32	25	1.96
35880639--35880665	2	13.5	2	100	0	54	48	0	0	51	1.00
35882817--35882891	33	2.3	33	85	0	105	30	21	22	25	1.99
35883079--35883161	27	3.1	27	76	10	91	36	19	21	22	1.95
35883294--35883374	27	3.0	27	89	3	110	24	18	18	38	1.93
35883335--35883386	27	1.9	27	84	0	68	28	11	19	40	1.86
35883367--35883479	27	4.2	27	79	6	122	31	11	20	36	1.88
35883365--35883479	54	2.1	54	83	3	151	32	12	20	35	1.89
35889927--35889963	16	2.3	16	90	0	56	62	5	24	8	1.44
35891567--35891651	44	1.9	44	82	0	107	37	23	12	25	1.91
35895920--35896001	34	2.4	34	80	8	87	25	23	24	26	2.00
35898570--35898696	47	2.7	49	77	3	134	22	14	25	37	1.92
35899026--35899075	19	2.7	18	87	9	73	40	2	10	48	1.48
35901394--35901441	19	2.6	19	86	3	71	35	2	14	47	1.56
35901466--35901549	42	2.0	42	95	0	150	29	10	15	44	1.80
35906981--35907120	39	3.6	39	93	0	217	24	28	20	26	1.99
35913769--35914275	250	2.0	252	87	6	740	45	6	27	20	1.76
35917513--35917599	37	2.3	36	94	5	147	26	33	19	20	1.97
35917668--35917816	49	3.1	48	94	2	255	28	27	10	33	1.89
35917670--35917818	47	3.1	47	94	3	262	28	27	10	33	1.89
35920215--35920252	20	1.9	20	88	0	58	34	2	10	52	1.50
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35921859--35921926	28	2.5	28	95	4	122	44	27	10	17	1.81
35923774--35923800	2	13.5	2	100	0	54	51	0	0	48	1.00
35925969--35926256	27	10.7	27	82	4	152	38	20	6	33	1.79
35925984--35926139	54	2.9	54	80	0	177	35	21	6	36	1.79
35926089--35926312	54	4.1	55	75	7	163	40	20	8	31	1.81
35926359--35926432	27	2.7	27	76	12	71	37	20	20	21	1.94
35927246--35927315	25	2.8	25	86	0	95	28	24	21	25	1.99
35927246--35927340	25	3.8	25	81	4	84	29	23	22	25	1.99
35931632--35931729	28	3.5	28	84	4	108	29	16	24	29	1.96
35939251--35939348	28	3.5	28	84	4	108	29	16	24	29	1.96
35957909--35958059	40	3.8	40	77	13	134	27	23	26	22	2.00
35957945--35958075	40	3.3	40	79	2	156	25	23	27	23	2.00
35965948--35966076	40	3.3	40	77	4	138	25	24	27	23	2.00
35975938--35976030	29	3.2	29	87	0	123	33	16	27	22	1.95
35975938--35976043	29	3.7	29	82	5	115	30	16	31	22	1.95
35977585--35977925	79	4.3	79	91	3	508	25	27	21	25	1.99
35977583--35977925	40	8.6	40	80	7	396	25	27	21	25	1.99
35980410--35980560	27	5.6	27	91	0	221	31	23	6	38	1.80
35980389--35980676	27	10.7	27	84	5	118	35	22	8	33	1.84
35980550--35980702	54	2.8	54	89	2	218	39	22	11	26	1.87
35980551--35980722	27	6.4	27	86	1	118	38	20	12	27	1.89
35980551--35980702	81	1.9	81	84	5	209	40	21	11	26	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35982881--35983218	50	6.7	50	78	2	336	31	26	18	23	1.97
35982880--35983171	101	2.9	101	87	4	417	30	26	19	23	1.98
35982881--35983166	151	1.9	151	81	2	351	30	26	19	23	1.98
35982881--35983218	151	2.2	151	80	4	349	31	26	18	23	1.97
35991459--35991503	20	2.2	21	84	11	67	40	0	0	60	0.97
35991458--35991499	17	2.5	17	84	11	59	38	0	0	61	0.96
35991474--35991503	10	3.0	10	90	0	51	36	0	0	63	0.95
35991793--35991882	44	2.0	44	89	8	139	51	2	8	37	1.46
35991850--35991883	18	1.9	18	88	5	52	58	2	2	35	1.28
35996677--35996733	28	2.0	28	100	0	114	52	17	7	22	1.68
35999298--35999322	12	2.1	12	100	0	50	12	8	8	72	1.29
36000450--36000490	21	1.9	22	85	5	57	58	4	7	29	1.46
36002408--36002483	22	3.3	22	67	22	66	32	13	28	25	1.93
36002387--36002674	47	6.1	47	94	0	504	34	11	27	25	1.91
36002387--36002714	47	7.0	46	87	3	388	33	11	28	25	1.91
36002387--36002714	141	2.3	141	88	3	446	33	11	28	25	1.91
36002698--36002874	46	3.8	46	85	5	246	33	9	33	23	1.86
36002698--36002874	96	1.8	96	92	2	302	33	9	33	23	1.86
36005977--36006026	13	3.9	13	80	12	59	64	0	4	32	1.12
36006335--36006365	14	2.2	14	94	0	53	67	0	0	32	0.91
36006348--36006485	62	2.3	63	82	9	162	63	5	5	26	1.37
36012224--36012256	11	2.8	12	90	4	50	42	33	0	24	1.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
36012329--36012403	37	2.0	37	92	0	123	14	1	53	30	1.50
36012370--36012432	29	2.2	29	91	5	101	17	1	49	31	1.56
36012645--36013352	133	5.3	133	90	0	1065	28	22	20	29	1.98
36014699--36014744	24	1.9	24	81	0	56	6	19	0	73	1.04
36014700--36014738	19	2.1	19	85	9	53	7	15	0	76	0.99
36014705--36014765	31	2.0	30	84	12	81	4	21	0	73	1.01
36017466--36017512	19	2.5	20	86	6	62	38	10	25	25	1.88
36018660--36018698	18	2.2	18	85	0	51	48	0	0	51	1.00
36018773--36018817	14	3.1	15	78	15	58	71	0	26	2	0.98
36022182--36022454	48	5.7	47	77	7	228	21	28	20	29	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325