genome.fa.s4.2.7.7.80.10.50.1000.295.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  295  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90437424--90437485	27	2.3	27	80	0	70	33	27	9	29	1.88
90437435--90437717	27	10.4	27	79	5	176	32	21	8	37	1.84
90437516--90437648	28	4.9	27	80	3	131	37	21	9	31	1.85
90437749--90437842	27	3.5	26	82	4	116	42	22	8	26	1.82
90437768--90437885	27	4.3	27	76	5	96	39	17	9	33	1.82
90437827--90437934	27	3.9	27	72	13	85	40	14	10	34	1.80
90437979--90438074	27	3.6	27	87	2	131	32	20	26	20	1.98
90438803--90438853	20	2.5	20	93	0	84	43	11	15	29	1.82
90438903--90439024	25	4.8	26	88	3	178	26	22	23	27	2.00
90438903--90439024	50	2.4	52	91	5	205	26	22	23	27	2.00
90439170--90439261	42	2.2	42	90	0	139	30	14	20	34	1.92
90439285--90439394	31	3.5	31	97	0	202	30	18	25	26	1.98
90448000--90448055	24	2.4	23	80	14	62	37	0	5	57	1.22
90448916--90448958	22	2.0	22	90	0	68	39	0	2	58	1.11
90448929--90448967	17	2.3	17	86	8	53	38	0	2	58	1.12
90451451--90451491	21	2.0	21	85	0	55	60	2	4	31	1.30
90451539--90451579	21	2.0	21	90	0	64	34	17	7	41	1.77
90452434--90452491	29	2.0	29	86	6	82	46	1	0	51	1.11
90452449--90452513	29	2.3	29	78	7	71	52	0	1	46	1.10
90459157--90459217	16	3.8	16	75	14	54	54	1	6	37	1.37
90460034--90460084	21	2.5	21	83	3	59	37	0	3	58	1.16
90470265--90470306	20	2.1	20	86	0	57	57	2	2	38	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90470901--90470926	2	13.0	2	100	0	52	50	0	0	50	1.00
90474514--90474749	122	1.9	123	85	2	330	43	8	10	38	1.68
90477496--90477520	3	8.3	3	100	0	50	68	0	32	0	0.90
90478988--90479051	34	2.0	33	84	9	87	43	6	9	40	1.62
90482208--90482306	44	2.2	45	85	3	128	30	22	13	34	1.92
90486443--90486480	17	2.3	17	90	4	60	47	0	0	52	1.00
90486615--90486663	22	2.2	23	85	3	64	67	6	2	24	1.24
90488139--90488174	17	2.1	17	89	5	54	13	0	13	72	1.13
90494403--90494498	47	2.0	47	100	0	192	33	16	10	39	1.83
90494633--90494663	16	1.9	16	93	0	53	51	0	0	48	1.00
90497477--90497513	18	2.1	18	89	0	56	48	8	32	10	1.67
90504333--90504371	20	2.0	20	84	0	51	43	2	17	35	1.63
90515929--90515960	11	2.6	13	80	19	50	59	9	0	31	1.29
90515935--90515962	11	2.5	11	100	0	56	57	7	0	35	1.26
90518257--90518419	40	4.1	40	81	6	197	31	22	13	32	1.93
90518257--90518425	79	2.1	79	88	5	243	31	21	14	31	1.93
90519883--90519934	18	2.9	18	82	5	70	44	13	19	23	1.86
90520275--90520381	27	4.0	27	83	0	124	41	18	16	23	1.90
90520275--90520381	54	2.0	54	84	0	142	41	18	16	23	1.90
90525962--90526009	24	2.0	25	87	4	71	22	12	35	29	1.91
90526073--90526137	19	3.5	19	79	12	80	41	3	4	50	1.38
90526207--90526231	12	2.1	12	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90528881--90528968	10	9.2	10	73	12	51	60	2	1	36	1.17
90528916--90528988	19	3.8	20	66	22	57	58	2	1	36	1.21
90528956--90529036	37	2.2	37	80	4	92	59	2	2	35	1.24
90529340--90529436	10	10.0	9	69	17	52	30	2	5	61	1.29
90529349--90529436	39	2.3	38	79	15	99	31	2	4	61	1.28
90529340--90529434	29	3.2	29	73	7	84	29	2	5	63	1.28
90529674--90529748	28	2.7	26	78	13	87	45	6	2	45	1.43
90530173--90530242	24	2.9	24	79	14	74	30	0	7	62	1.21
90530173--90530243	36	2.0	36	88	0	106	30	0	7	61	1.22
90533750--90533782	14	2.4	14	90	5	50	42	0	3	54	1.15
90536116--90536145	15	2.0	15	100	0	60	20	26	6	46	1.75
90544609--90544686	20	3.9	19	72	11	50	57	2	5	34	1.34
90544651--90544696	21	2.2	20	88	3	65	65	0	8	26	1.21
90544651--90544712	21	3.0	20	79	9	54	61	0	6	32	1.21
90563643--90564038	211	1.9	210	88	2	598	50	14	6	28	1.68
90564848--90564983	68	2.0	67	92	1	227	52	10	10	27	1.68
90565153--90565965	279	2.9	280	86	3	1116	48	12	15	23	1.79
90570392--90570421	9	3.3	9	100	0	60	33	23	10	33	1.88
90572885--90573749	433	2.0	433	99	0	1694	35	16	18	29	1.93
90577862--90577891	9	3.3	9	100	0	60	33	23	10	33	1.88
90587631--90587720	43	2.1	43	82	0	108	51	20	11	17	1.75
90587839--90588002	87	1.9	86	83	2	213	47	18	12	21	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90587800--90587961	43	3.7	44	73	7	123	45	17	12	23	1.83
90588122--90588227	47	2.3	46	85	4	133	45	14	16	23	1.84
90588854--90588891	16	2.4	16	86	8	51	0	21	0	78	0.74
90589551--90589600	25	2.0	25	88	4	73	2	20	0	78	0.86
90591265--90591305	21	2.0	21	90	0	64	73	12	2	12	1.20
90591422--90591492	36	2.1	34	89	7	108	39	11	14	35	1.81
90591422--90591492	19	3.8	19	88	7	119	39	11	14	35	1.81
90591422--90591515	19	4.7	22	84	10	75	38	9	14	37	1.79
90591780--90591816	18	2.0	19	89	5	58	32	0	0	67	0.91
90600672--90601262	220	2.7	220	89	1	898	32	18	21	27	1.96
90601203--90601491	78	3.7	78	90	1	445	31	18	24	24	1.97
90601511--90601710	89	2.2	90	86	5	289	31	15	29	23	1.95
90601438--90601710	45	6.0	45	77	6	275	30	15	27	25	1.96
90602059--90602129	19	3.9	19	90	9	121	36	11	15	36	1.83
90602073--90602139	17	3.5	21	76	19	67	38	8	16	35	1.80
90602418--90602453	18	1.9	19	88	5	56	30	0	0	69	0.89
90603628--90603660	17	1.9	18	88	11	52	48	0	9	42	1.35
90604822--90604879	29	2.0	29	100	0	116	31	6	27	34	1.83
90605581--90605632	27	1.9	27	88	7	79	26	11	15	46	1.80
90606793--90606817	2	12.5	2	100	0	50	52	0	0	48	1.00
90606805--90606861	29	1.9	30	89	3	89	61	0	5	33	1.18
90606938--90607020	34	2.6	30	74	18	71	57	3	1	37	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90606940--90607086	5	29.0	5	67	15	70	59	2	1	36	1.20
90606938--90607086	36	4.1	37	78	11	141	59	2	1	36	1.20
90607150--90607205	25	2.2	24	81	9	67	66	0	5	28	1.14
90613075--90613149	23	3.3	22	71	17	64	36	17	25	21	1.95
90614872--90615375	129	3.9	130	79	5	338	34	18	19	28	1.95
90614911--90615362	129	3.5	128	80	5	446	32	19	19	28	1.96
90616351--90616397	23	2.0	23	100	0	94	53	4	4	38	1.40
90616510--90616538	2	14.5	2	100	0	58	51	0	0	48	1.00
90618442--90618631	43	4.3	43	68	9	132	28	23	18	28	1.98
90618302--90618952	132	4.9	132	88	1	824	28	24	17	28	1.97
90618527--90618722	44	4.5	43	70	8	117	32	25	15	27	1.95
90630732--90631059	130	2.5	130	83	1	406	33	19	19	28	1.96
90634874--90634932	16	3.2	17	77	22	66	52	0	0	47	1.00
90634879--90634922	22	2.0	22	86	8	63	54	0	0	45	0.99
90634942--90634983	13	2.9	14	80	13	50	54	0	0	45	0.99
90634946--90634982	16	2.3	16	86	13	58	59	0	0	40	0.97
90635009--90635064	17	3.3	17	72	18	53	53	0	0	46	1.00
90635432--90635504	33	2.2	34	80	9	89	47	16	5	30	1.69
90635521--90635559	14	2.8	14	88	0	51	38	12	2	46	1.56
90638081--90638115	18	1.9	18	100	0	70	65	11	0	22	1.24
90641141--90641189	21	2.4	21	86	3	64	22	12	6	59	1.55
90655615--90655665	9	5.7	9	76	15	52	33	1	1	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
90663019--90663049	2	15.5	2	100	0	62	48	0	0	51	1.00
90666513--90666610	29	3.2	32	76	13	91	36	1	0	62	1.02
90667048--90667115	34	2.0	34	100	0	136	41	20	8	29	1.82
90674305--90674401	49	2.0	49	95	0	176	34	14	13	38	1.85
90684664--90684704	2	20.5	2	100	0	82	48	0	0	51	1.00
90687358--90687412	21	2.6	21	80	5	58	21	18	16	43	1.88
90687417--90687476	29	2.0	30	87	9	88	36	21	18	23	1.95
90690410--90690442	16	2.1	16	88	5	50	45	0	9	45	1.35
90696512--90696570	26	2.2	26	76	8	66	54	3	8	33	1.48
90696729--90696861	25	5.1	25	75	11	124	54	4	7	33	1.49

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325