genome.fa.s4.2.7.7.80.10.50.1000.152.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Chr04 98600468 
Parameters: 2 7 7 80 10 50 1000
Length:  98600468

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325   

This is table  152  of  325  ( 38914 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46349707--46349740	17	2.0	17	88	11	52	32	0	0	67	0.91
46349702--46349738	15	2.4	16	86	8	51	32	0	0	67	0.91
46355137--46355251	29	4.0	29	81	6	119	26	29	15	27	1.96
46358960--46359126	46	3.6	47	76	11	173	31	18	25	23	1.97
46362095--46362258	71	2.3	71	100	0	328	18	28	17	35	1.94
46362095--46362292	71	2.8	70	91	3	258	20	28	17	33	1.95
46369663--46369826	71	2.3	71	100	0	328	18	28	17	35	1.94
46369663--46369860	71	2.8	70	91	3	258	20	28	17	33	1.95
46380692--46380798	55	1.9	55	82	0	133	18	23	28	28	1.98
46386102--46386204	37	2.8	37	96	0	188	23	33	20	23	1.97
46386249--46386630	48	8.0	48	92	1	651	31	25	6	35	1.82
46386248--46386630	95	4.0	95	96	0	694	31	25	6	35	1.82
46386248--46386630	143	2.7	143	92	1	651	31	25	6	35	1.82
46386610--46386647	17	2.2	17	100	0	76	42	15	0	42	1.47
46386562--46386696	65	2.1	65	94	0	234	36	23	4	35	1.75
46389407--46389442	19	1.9	18	94	5	63	0	19	2	77	0.88
46401474--46401600	46	2.7	47	82	4	159	33	27	14	24	1.94
46415316--46415472	43	3.6	44	81	9	198	31	26	17	23	1.97
46427635--46427679	22	2.0	22	100	0	90	44	17	13	24	1.85
46431538--46431565	13	2.2	13	100	0	56	21	0	28	50	1.49
46448333--46448443	27	4.1	27	84	7	136	15	24	22	37	1.93
46448333--46448443	54	2.1	54	87	3	161	15	24	22	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46454003--46454036	18	1.9	18	88	5	52	32	0	38	29	1.58
46465198--46465265	35	1.9	35	90	0	109	30	17	27	23	1.97
46468807--46469377	289	2.0	289	98	0	1115	29	17	22	30	1.97
46475664--46475696	11	3.1	11	95	4	59	27	15	27	30	1.96
46479960--46480046	37	2.3	36	88	9	122	27	33	18	20	1.96
46480115--46480367	49	5.1	49	93	0	416	30	26	9	34	1.88
46483228--46483316	40	2.2	40	86	7	119	24	23	24	26	2.00
46486052--46486129	25	3.2	25	66	23	76	32	30	3	33	1.76
46486001--46486462	47	9.7	47	86	8	587	29	30	7	32	1.85
46486001--46486462	96	4.8	94	87	7	628	29	30	7	32	1.85
46486001--46486462	145	3.2	145	95	1	792	29	30	7	32	1.85
46490012--46490091	29	2.8	29	80	0	88	30	35	16	18	1.93
46497767--46497824	30	2.0	27	90	9	89	31	24	15	29	1.95
46497932--46498034	29	3.6	28	80	5	116	29	33	16	21	1.95
46500158--46500274	55	2.1	55	82	3	137	22	26	33	17	1.96
46504716--46504883	40	4.2	40	80	3	196	25	22	27	25	2.00
46512723--46512890	40	4.2	40	80	3	196	25	22	27	25	2.00
46514255--46514627	48	7.8	48	93	0	647	34	6	27	31	1.83
46514662--46514758	37	2.6	37	96	0	176	25	16	31	25	1.96
46524689--46524815	55	2.3	55	81	8	143	28	26	29	15	1.96
46527422--46527586	85	1.9	85	83	2	215	24	19	30	24	1.98
46527383--46527587	43	4.8	43	82	4	211	25	19	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46527435--46527667	43	5.6	41	77	6	152	27	18	29	24	1.98
46530660--46530687	6	4.7	6	100	0	56	14	0	0	85	0.59
46538914--46539062	80	1.9	80	81	2	183	22	30	24	22	1.99
46538955--46539062	40	2.7	38	85	8	128	21	29	25	23	1.99
46547067--46547216	40	3.8	39	77	9	126	22	26	24	26	2.00
46561165--46561274	37	3.0	37	89	0	157	22	34	20	21	1.97
46561396--46561893	47	10.3	47	91	4	694	27	29	9	32	1.89
46561400--46561890	202	2.5	194	89	5	710	27	29	9	32	1.89
46561444--46561893	249	1.8	242	91	5	742	28	29	10	32	1.89
46561446--46561890	155	3.0	152	89	7	632	27	29	10	32	1.89
46565020--46565191	40	4.3	39	88	2	193	26	25	20	27	1.99
46565053--46565191	40	3.5	39	92	2	224	27	23	20	28	1.99
46565132--46565254	63	2.0	63	93	0	210	28	21	21	28	1.99
46565191--46565394	40	5.3	40	84	10	291	25	23	20	30	1.98
46565250--46565312	31	2.0	31	96	0	117	25	22	19	33	1.97
46565208--46565399	71	2.5	77	86	8	270	26	23	19	30	1.98
46565191--46565392	111	1.8	111	94	0	359	26	23	20	30	1.98
46567301--46567412	36	3.1	36	89	2	170	23	33	17	25	1.96
46567533--46568104	47	12.2	47	95	0	961	27	29	9	32	1.89
46567579--46567657	25	3.3	25	67	16	76	30	29	6	34	1.82
46571134--46571233	28	3.5	28	76	2	101	30	27	20	23	1.98
46571243--46571415	40	4.3	39	87	4	168	27	25	20	27	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46571243--46571415	80	2.2	80	87	2	240	27	25	20	27	1.99
46571434--46571496	31	2.0	31	93	0	108	26	22	17	33	1.96
46571465--46571578	40	2.8	40	91	0	201	27	24	17	30	1.97
46571415--46571578	71	2.2	77	86	9	223	26	24	18	30	1.98
46573490--46573609	37	3.2	37	90	0	186	23	32	20	23	1.98
46573727--46574829	47	23.3	47	90	2	1706	27	29	9	33	1.89
46574577--46574829	101	2.6	102	90	6	398	29	28	9	32	1.88
46585026--46585174	80	1.9	80	81	2	183	22	30	24	22	1.99
46585067--46585174	40	2.7	38	85	8	128	21	29	25	23	1.99
46593136--46593284	80	1.9	80	81	2	183	22	30	24	22	1.99
46593177--46593284	40	2.7	38	85	8	128	21	29	25	23	1.99
46599229--46599331	46	2.2	48	85	3	138	35	14	23	26	1.93
46603945--46603983	19	2.2	17	86	9	51	30	0	7	61	1.24
46606454--46608013	780	2.0	781	93	0	2674	40	23	7	28	1.82
46608197--46608272	40	1.9	40	89	5	118	31	26	17	25	1.97
46613926--46613966	19	2.2	19	95	0	73	63	4	24	7	1.40
46616036--46616107	36	2.0	36	86	5	101	63	4	2	29	1.27
46616653--46616716	20	3.3	20	68	14	53	35	0	0	64	0.94
46624614--46624884	48	5.6	48	76	5	260	28	19	28	23	1.98
46624614--46624889	96	2.9	94	80	5	304	28	19	27	23	1.98
46628306--46628349	21	2.0	23	82	8	56	29	15	4	50	1.64
46635722--46635947	40	5.7	40	88	4	280	26	26	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46640193--46640359	40	4.2	40	78	6	160	25	22	27	24	2.00
46648195--46648361	40	4.2	40	78	6	160	25	22	27	24	2.00
46649928--46650099	24	7.2	24	90	3	258	26	20	22	30	1.98
46650150--46650188	20	2.0	20	100	0	78	30	20	12	35	1.90
46650151--46650195	20	2.2	20	92	0	72	31	22	13	33	1.92
46650232--46650279	25	1.9	25	86	0	69	25	16	25	33	1.96
46655538--46655606	27	2.5	28	90	2	104	27	15	26	30	1.96
46664915--46664962	20	2.3	21	85	3	71	33	10	18	37	1.85
46665010--46665079	25	2.8	25	80	0	86	27	22	24	25	2.00
46665326--46665390	31	2.1	32	88	5	98	30	15	24	29	1.96
46668512--46668567	11	5.5	11	71	16	57	35	12	19	32	1.89
46668501--46668567	20	3.3	20	93	0	116	34	11	20	32	1.90
46668618--46668735	25	4.8	25	92	2	177	27	20	24	27	1.99
46668618--46668771	50	3.1	50	82	8	163	29	19	24	27	1.98
46668618--46668771	75	2.1	75	80	9	172	29	19	24	27	1.98
46668956--46669018	31	2.0	31	87	0	90	38	14	22	25	1.92
46675849--46675896	20	2.3	21	92	3	80	35	10	18	35	1.85
46675944--46676013	25	2.8	25	93	0	122	25	25	22	25	2.00
46675944--46676038	50	1.9	50	80	8	113	27	24	23	25	2.00
46676375--46676405	14	2.2	14	100	0	62	38	12	12	35	1.82
46677822--46677961	39	3.6	39	88	0	199	25	22	26	25	2.00
46683657--46683826	46	3.7	46	75	13	186	22	20	28	28	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
46688554--46688627	29	2.6	29	86	4	96	27	32	14	25	1.95
46694563--46694705	40	3.6	40	91	5	211	23	26	28	20	1.99
46696707--46696867	29	5.6	29	90	0	223	24	31	14	29	1.95
46696678--46696867	87	2.2	87	80	0	218	24	32	15	27	1.95
46700320--46700492	46	3.8	45	78	13	199	22	21	27	28	1.99
46700317--46700487	93	1.8	93	92	2	290	22	21	28	27	1.99
46703051--46703144	48	2.0	48	93	0	161	24	21	27	26	1.99
46709879--46709965	29	3.0	28	83	8	113	28	12	28	29	1.93
46726333--46726403	35	2.0	35	97	0	133	29	4	22	43	1.72
46735279--46735488	40	5.2	40	87	2	305	25	24	28	21	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   136   137   138   139   140   141   142   143   144   
          145   146   147   148   149   150   151   152   153   154   155   156   157   158   159   160   
          161   162   163   164   165   166   167   168   169   170   171   172   173   174   175   176   
          177   178   179   180   181   182   183   184   185   186   187   188   189   190   191   192   
          193   194   195   196   197   198   199   200   201   202   203   204   205   206   207   208   
          209   210   211   212   213   214   215   216   217   218   219   220   221   222   223   224   
          225   226   227   228   229   230   231   232   233   234   235   236   237   238   239   240   
          241   242   243   244   245   246   247   248   249   250   251   252   253   254   255   256   
          257   258   259   260   261   262   263   264   265   266   267   268   269   270   271   272   
          273   274   275   276   277   278   279   280   281   282   283   284   285   286   287   288   
          289   290   291   292   293   294   295   296   297   298   299   300   301   302   303   304   
          305   306   307   308   309   310   311   312   313   314   315   316   317   318   319   320   
          321   322   323   324   325